Field Scale DNAPLs Transport Under Nonequilibrium Sorption Conditions
Spatial Variation in 2-Methyl-4-chlorophenoxyacetic Acid Mineralization and Sorption in a Sandy Soil...
Transcript of Spatial Variation in 2-Methyl-4-chlorophenoxyacetic Acid Mineralization and Sorption in a Sandy Soil...
TECHNICAL REPORTS
1918
Th e phenoxyacetic acid herbicide MCPA (2-methyl-4-chlorophenoxyacetic acid) is frequently detected in groundwater beneath Danish agricultural fi elds. We investigated spatial variation in microbial MCPA mineralization potential in a fl at agricultural fi eld of fi ne sandy soil (USDA classifi cation: Humic Dystrudept) located on the Yoldia plains of Northern Jutland, Denmark. Samples for determination of MCPA mineralization and sorption were collected from the Ap and Bs horizons at 51 sampling sites located in a 200 × 220 m grid. Spatial variation in sorption was low in both horizons (distribution coeffi cient, 0.36–4.16 L kg−1). Sorption correlated strongly with soil organic carbon content in both horizons (CV, 93 and 83%, respectively) and negatively with soil pH. [Ring-14C]-MCPA mineralized readily in the Ap horizon, with 49 to 62% of the 14C-MCPA being converted to 14CO
2 during the 67-d incubation
period. With the subsoil, mineralization of 14C-MCPA varied considerably between samples (0.5–72.8%). At neither depth was there correlation between 14C-MCPA mineralization and sorption, soil pH, organic carbon content, clay content, number of colony-forming units (CFU), pseudomonad CFU, or any of the four microbial activity parameters measured. Th e presence of microbial genes encoding for the TfdA enzyme was quantifi ed using real-time polymerase chain reaction. No correlation was found between MCPA mineralization potential and the natural background number of tfdA genes present in the soil samples. Th e degradation kinetics suggests that the high 14C-MCPA mineralization rate detected in soil samples was linked to growth of the MCPA-degrading soil microbial community.
Spatial Variation in 2-Methyl-4-chlorophenoxyacetic Acid Mineralization and Sorption
in a Sandy Soil at Field Level
L. Fredslund* Geological Survey of Denmark and Greenland
F. P. Vinther University of Aarhus
U. C. Brinch Geological Survey of Denmark and Greenland, Biotech Research and Innovation Centre
L. Elsgaard University of Aarhus
P. Rosenberg Geological Survey of Denmark and Greenland
C. S. Jacobsen Geological Survey of Denmark and Greenland, University of Copenhagen
The presence and activity of pesticide catabolizing soil
microorganisms in agricultural fi elds is known to be infl uenced
by biotic and abiotic soil properties (Bending et al., 2001; Bending
et al., 2003; Nunan et al., 2002; Walker et al., 2001). Microbial
processes in the soil generally exhibit considerable spatial variation
(Nunan et al., 2002), although the factors responsible for this spatial
heterogeneity generally remain unclear.
Th e degradation of most pesticides in soil is enzymatically
catalyzed by microorganisms (Topp et al., 1997) and generally fol-
lows zero-order or fi rst-order kinetics. Th is indicates that they are
degraded by co-metabolism along with the general metabolic activi-
ties of the soil community and hence provide little or no energy to
the organisms involved. Repeated application of a pesticide to a soil
for a period of several years may result in enhanced biodegradation,
thereby indicating adaptation of the soil microbial community (Jen-
sen and Petersen, 1952) and proliferation of organisms able to use
the compound as an energy source (Bending et al., 2001).
As the indigenous soil microbial community adapts to repeated
exposure to a pesticide, the presence and capacity of the degrading
microorganisms in a soil are mainly determined by the pesticide
application history at the site (Sorensen et al., 2003; Sorensen and
Aamand, 2003). It does not explain the intra-fi eld spatial varia-
tion in degradation rate, however. Th e latter has been attributed to
parameters such as general metabolic diversity and microbial bio-
mass, growth-linked versus co-metabolic degradation mechanisms,
and soil pH and to intrinsic soil properties such as Ctotal
/Ntotal
ratio
and water-extractable potassium (Bending et al., 2001; Rasmussen
et al., 2005; Walker et al., 2001; Walker et al., 2002).
Abbreviations: ASA, arylsulfatase activity; CFU, colony-forming units; Ct, cycle
threshold; 2,4-D, 2,4-dichlorophenoxyacetic acid; FDA, fl uorescein diacetate hydrolysis;
ISR, in situ soil respiration; MCP, 2-methyl-4-chorophenol; MCPA, 2-methyl-4-
chlorophenoxyacetic acid; Corg
, organic carbon; PCR, polymerase chain reaction; SIR,
substrate-induced respiration; TSA, tryptic soy broth agar.
L. Fredslund, U.C. Brinch, P. Rosenberg, and C.S. Jacobsen, Dep. of Geochemistry,
Geological Survey of Denmark and Greenland (GEUS), Øster Voldgade 10, DK-1350
Copenhagen, Denmark; F.P. Vinther and L. Elsgaard, Univ. of Aarhus, Faculty of
Agricultural Sciences, Inst. of Agroecology and Environment, DK-8830 Tjele, Denmark;
U.C. Brinch, Biotech Research and Innovation Centre (BRIC), Fruebjergvej 3, DK-
2100 Copenhagen, Denmark; C.S. Jacobsen, Dep. of Natural Sciences, Faculty of Life
Sciences, Univ. of Copenhagen, Thorvaldsensvej 40, DK-1871 Frederiksberg, Denmark.
Copyright © 2008 by the American Society of Agronomy, Crop Science
Society of America, and Soil Science Society of America. All rights
reserved. No part of this periodical may be reproduced or transmitted
in any form or by any means, electronic or mechanical, including pho-
tocopying, recording, or any information storage and retrieval system,
without permission in writing from the publisher.
Published in J. Environ. Qual. 37:1918–1928 (2008).
doi:10.2134/jeq2006.0208
Received 30 May 2006.
*Corresponding author ([email protected]).
© ASA, CSSA, SSSA
677 S. Segoe Rd., Madison, WI 53711 USA
TECHNICAL REPORTS: VADOSE ZONE PROCESSES AND CHEMICAL TRANSPORT
Fredslund et al.: Field-Level Variation in MCPA Mineralization and Sorption 1919
Th e phenoxyacetic acid herbicide MCPA (2-methyl-4-chlo-
rophenoxyacetic acid) has been widely used to control a range of
broadleaf weeds in agricultural fi elds and uncultivated areas over
the past 50 years (Caux et al., 1995). Th e substance is highly water
soluble with low retention in soil (Kd, 0.3–1.0 L kg−1), thus pos-
ing the risk that it may leach to and contaminate the groundwater
(Helweg, 1987; Socias-Viciana, 1999). Under aerobic conditions,
MCPA degrades rapidly (half-life, 3–16 d) (Muller, 1997; Th or-
stensen and Lode, 2001). Even though the MCPA mineralization
potential of agricultural soils generally seems to be high when
studied in the laboratory, MCPA is nevertheless detected in Dan-
ish groundwater beneath agricultural fi elds and in creeks. During
the period 1993 to 2003, MCPA was detected in 9.3% of 118
groundwater wells monitored in Denmark (GEUS, 2004).
Th e degradation of phenoxyacetic acid herbicides such as
2,4-dichlorophenoxyacetic acid (2,4-D), MCPA, and related
compounds has been studied intensively, and detailed knowledge
is available about the catabolic pathways that these compounds
follow (Bollag et al., 1967; Gaunt and Evans, 1971; Pieper et al.,
1988). Th e fi rst step in the degradation of MCPA is mediated
by the TfdA enzyme (a ketoglutarate dioxygenase). Th is converts
MCPA to 2-methyl-4-chorophenol (MCP) by oxidation of α-ke-
toglutarate to succinate. Th e gene encoding for the TfdA enzyme
is known to be carried within the tfdA-F gene cluster, which was
fi rst identifi ed on the conjugative plasmid pJP4 in Alcaligenes eutrophus (Ralstonia eutropha) JMP134 (Don and Pemberton,
1981; Don and Pemberton, 1985). Based on sequence similarity
analysis, it has recently been proposed to subdivide the tfdA genes
into three classes: Class I contains those genes that are closely
related to the pJP4 plasmid, and Classes II and III cover all other
groups (Itoh et al., 2004). Class I, II, and III tfdA genes encode
enzymes that convert 2,4-D to 2,4-dichlorophenol.
Th e phenoxyacetic acid herbicide 2,4-D, which is closely
related to MCPA, is degraded by specifi c bacteria able to use
it as a source of C and energy and by other microorganisms
in co-metabolic pathways (Robertson and Alexander, 1994).
Spatial variation in 2,4-D mineralization has been found to
be inversely proportional to scale over the range fi eld scale to
microhabitat scale (<1 cm3) due to the uneven distribution
of degrading bacteria and the C necessary for co-metabolism
(Gonod et al., 2003).
Little information is available about spatial variation in
the microbial degradation of MCPA. In microcosm studies
of MCPA degradation in topsoil and subsoil from a sandy
agricultural fi eld, Baelum et al. (2006) found a shift in cata-
bolic tfdA genes from the Class I tfdA genes that were initially
dominant in the soil to the Class III tfdA genes that were re-
sponsible for the observed mineralization of MCPA.
Th e objective of the present study was to examine variation
in microbial MCPA mineralization potential at fi eld level and
to relate this to relevant biotic and abiotic parameters, includ-
ing soil sorption of MCPA, and to the initial presence of tfdA
genes as measured by quantitative real-time polymerase chain
reaction (PCR).
Materials and Methods
Field DataTh e study site was a fl at, fi ne sandy agricultural fi eld classifi ed
as a Humic Dystrudept according to the USDA classifi cation sys-
tem. Th e fi eld was located in the northern part of Jutland, Den-
mark (52°27′E, 43°21′N) on the Yoldia plains. During recent
years, the fi eld has received around 10,000 kg animal manure
ha−1 yr–1 and has mainly been cultivated with cereals. Th e herbi-
cide MCPA had been applied to the fi eld by farmers several times
during the 10-yr period before the study. A regular 35-point grid
covering approximately 3 ha was established in the fi eld. Th e
distance between grid points was approximately 35 m. At four
randomly selected grid points, an additional sampling point was
established at a distance of 5 m from the grid point in each direc-
tion along the grid, resulting in a total of 51 sampling points in
the fi eld. Th e geographic location of each grid point was deter-
mined using a GPS with a precision of approximately 1 m.
Soil Sampling and StorageAt each grid point, approximately 10 kg of soil was sampled
from the topsoil layer (Ap horizon; 5–25 cm soil depth inter-
val) and from the subsoil (Bs horizon; 40–60 cm soil depth
interval). Th e samples were brought to the laboratory in closed
plastic containers, and each container was mixed in a large
end-over-end shaker for 10 min. Each soil sample was sieved
through a 4-mm mesh, with the mesh being carefully cleaned
between samples to avoid cross-contamination. For analysis
of microbial activity, 200-g aliquots were kept in closed inert
Rilsan plastic bags (Rotek A/S, Sdr. Felding, Denmark) at 4°C
for a maximum of 10 d. For analysis of pesticide sorption, the
soils were air-dried at room temperature and stored under dry
conditions. For all other uses (mineralization analysis, colony-
forming unit [CFU] counts, and DNA extraction), the sieved
soil was stored at –20°C for up to several months before being
processed consecutively. Seven days before use, the soil samples
were acclimatized at 10°C (Mortensen and Jacobsen, 2004).
Th e results of the pedologic and geochemical analyses per-
formed on the soil samples are summarized in Table 1.
Soil CharacteristicsTh e soil texture, classifi ed as clay (<2 μm), silt (2–63 μm),
and sand (63–500 μm), was measured in the 102 individual
soil samples by chemical dispersion with Na2PO
7 followed by
hydrometric determination of clay and silt and by wet sieving
of sand as described by Gee and Bauder (1986). Total organic
Table 1. Major soil characteristics shown for the two horizons studied at the test site.
Ap horizon (5–25 cm) Bs horizon (40–60 cm)
Parameter Mean† Range Mean† Range
Clay (%) 3.6 2.6–4.3 2.4 1–7.4
Silt (%) 9.5 2.9–17.5 7.0 1.9–51.0
Sand (%) 85.0 76.7–93 90.1 44.5–96.9
Corg
(g kg−1) 12 5–23 2 0–7
pH (CaCl2) 6.2 5.2–6.7 5.4 4.3–6.4
† n = 51.
1920 Journal of Environmental Quality • Volume 37 • September–October 2008
carbon (Corg
) content was determined on ball-milled sub-
samples using a LECO CNS-1000 analyzer with an infrared
detector (LECO Corporation, St. Joseph, MI).
CFU CountsFrozen 15-g soil samples in glass vials were thawed at 10°C
in the dark for 7 d, corresponding to the time used for ac-
climatization of soil samples before the mineralization experi-
ments. Soil suspensions were prepared by blending 10.0 g soil
with 100 mL 0.9% NaCl for 60 s. Large soil particles were
allowed to settle for 15 min before sampling of 1.0 mL soil
suspension for a 10-fold dilution series in 0.9% NaCl.
Total viable counts of bacteria in the samples were made by
drop-plating on 1/300 tryptic soy broth agar (TSA) plates. Th e
bacterial pseudomonad population in each sample was estimat-
ed from triplicate plate counts on Gould S1 agar plates (Gould
et al., 1985). Th e plates were incubated at 20°C for 72 h.
Microbial Activity MeasuresIn situ soil respiration (ISR) was measured using a dynamic
chamber method as described by Vinther et al. (2007). Arylsulfa-
tase activity (ASA) was measured on 2-g soil samples as described
by Elsgaard et al. (2002) and Vinther et al. (2007). Fluorescein di-
acetate (FDA) hydrolysis was measured according to the method of
Schnurer and Rosswall (1982). Substrate-induced respiration (SIR)
was measured using the method of West and Sparling (West and
Sparling, 1986) as described by Vinther et al. (2007). All microbial
activity measurements where made on nonfrozen soil samples in
connection with or shortly after sample collection (10 d max).
Mineralization ExperimentsA stock solution of ring-labeled 14C-MCPA was prepared by
dissolving analytical grade MCPA (99.5% purity) purchased from
Dr. Ehrenstorfer GmbH (Augsburg, Germany) in Milli-Q water
(Millipore, Billerica, MA) and adding trace amounts of [Ring-14C]-
MCPA (159.7 μCi mmol–1) purchased from IZOTOP (Budapest,
Hungary) to achieve an initial radioactivity in each microcosm of
approximately 50,000 dpm and a fi nal MCPA concentration of 20
mg L–1. To ensure the complete dissolution of the MCPA and to
avoid disturbance of the soil pH, the pH of the stock solution was
adjusted to 6.5 with NaOH. Th e radiochemical purity of [Ring-14C]-MCPA was >95% according to the manufacturer.
Th e mineralization of MCPA was estimated in sieved (>4 mm)
soil in 100-mL bottles with airtight glass lids. Microcosms were
prepared in triplicate for each soil sample using 10.0 g soil (dry
weight). Th e soil moisture content was adjusted to 90% of the soil
water-holding capacity with sterile Milli-Q water (corresponding
to approximately 9% H2O after MCPA spiking). Th e microcosms
were spiked with 500 μL of the MCPA stock solution to obtain
a fi nal concentration of 1.0 mg MCPA kg−1 soil (dry weight). A
sterile 3-mL glass vial containing 2.0 mL 0.5 M NaOH was placed
in each microcosm to capture the CO2 produced during miner-
alization of the MCPA as described by Larsen et al. (2000). Th e
microcosms were incubated at 10°C in the dark.
Th e NaOH in the microcosm CO2 traps was sampled at
Days 8, 15, 22, 29, 39, 43, 52, 57, and 67. Th e 14CO2 content
was determined using a Wallac 1409 liquid scintillation counter
after mixing with 10 mL of OptiPhase Hisafe 3 scintillation
cocktail (Wallac, Turku, Finland). Radioactivity was converted
to percentage mineralization of the MCPA in the microcosms.
Sorption ExperimentsSorption of [Ring-14C]-MCPA was determined on all 102
soil samples in triplicate. Air-dried samples were sieved to <2
mm before initiation of the sorption experiments. Th e sorption
experiments were performed in 13-mL Pyrex vials with Tefl on
screw-caps. A sample to solution ratio of 1:1 was used with a
liquid phase consisting of 0.01 M CaCl2, as recommended in
the OECD guidelines for sorption studies (OECD, 2000). Th e
MCPA concentration was 250 μg kg−1, and each vial contained
20,000 dpm 14C-MCPA mL–1. Th e vials were incubated on an
orbital shaker at 10°C for 96 h. Th is was followed by centrifu-
gation (30 min at 2700 × g) and removal of the supernatant.
Th e 14C in the supernatant was measured by liquid scintillation
counting as described for the mineralization experiments, and
the distribution coeffi cient (Kd) was calculated. Th e pH was
measured on one of each set of triplicate soil subsamples after
dilution in 0.01 M CaCl2. Th e spatial variation in MCPA sorp-
tion and mineralization was visualized on contour maps pro-
duced by ordinary kriging with the Surfer version 7.00 surface
mapping system (Golden Software, Inc., Golden, CO).
DNA ExtractionFrozen 15-g soil samples in glass vials were thawed at 10°C
in the dark for 7 d to acclimatize the soil microorganisms before
DNA extraction. Whole-community DNA was extracted from
0.5-g (wet weight) soil samples using the FastDNA SPIN kit for
soil (Bio101 Inc., Carlsbad, CA). Th e protocol recommended
by the manufacturer was followed with two modifi cations. Th e
beat-beating step was modifi ed to four 30-s pulses at speed 4
instead of one 30-s pulse at speed 5.5 in the FastPrep FP 120
instrument (Bio101 Inc.). A freeze-thaw step was included with
freezing of the samples for 1 h at –80°C and thawing for 30
min at 30°C. Each DNA sample was eluted in 100 μL RNase/
DNase-free water (Bio101 Inc.) and stored at –80°C.
Real-Time Quantitative PCRTh e forward primer 5′-GAGCACTACGC(G/
A)CTGAA(T/C)TCCCG-3′ and the reverse primer 5′-GTC-
GCGTGCTCGAGAAG-3′ were used to yield a 210–base-
pair DNA fragment. Th e primers were purchased from MWG
Biotech (Ebersberg, Germany). Th e primer set was designed
on the basis of 22 Class I and Class III tfdA genes retrieved
from GenBank (Baelum et al., 2006).
Th e mixture used for the real-time PCR consisted of the
QuantiTect SYBR green PCR kit (QIAGEN, Crawley, UK)
containing deoxynucleoside triphosphate mix, HotStar Taq
DNA polymerase, PCR buff er, Rox, and 2.5 mM MgCl2.
Th e reaction mixtures contained 0.4 μM of each primer, 12.5
μL of the respective SYBR green mix, 25.0 μg bovine serum
Fredslund et al.: Field-Level Variation in MCPA Mineralization and Sorption 1921
albumin (Amersham Bioscience, Buckinghamshire, United
Kingdom), 1.0 μL of 1:10-diluted DNA extract, and RNase/
DNase-free water to a fi nal volume of 25 μL.
Duplicate PCR was performed on DNA extracted from
each of the 51 topsoil samples and 27 of the subsoil samples.
Standards for the quantitative PCR were prepared using the
phenoxy acid degrader Ralstonia eutropha AEO106, which car-
ries the pRO101 plasmid. After inoculation into 0.5 g topsoil in
amounts of 8 × 106, 8 × 105, 8 × 104, 8 × 103, 8 × 102, 8 × 101,
and 8 × 100 cells g soil–1, the DNA was extracted from the soil as
described previously. Th e extracts were diluted 10-fold to reduce
the eff ect of humic acid disturbances. Th e DNA extracted from
Pseudomonas cepacia DBO1 (pRO101) (Harker et al., 1989) was
used as a positive control for the real-time PCR reaction.
Real-time PCR was performed using an iCycler iQ (Bio-Rad,
Hercules, CA) under the following conditions: 6 min at 95°C;
50 cycles of 45 s at 94°C, 30 s at 64°C, and 2 min at 72°C; 6
min at 72°C. To obtain a specifi c melting profi le of the real-time
PCR products, an 80-cycle protocol of 45 s at 58°C; 30 s at
58°C to 98°C, increasing 0.5°C every cycle; and 45 s at 58°C
was performed after the real-time PCR. Th e melting profi le
was used to confi rm the presence of the specifi c product and to
determine whether the PCR product was composed of DNA
sequences of more than one length. Th e size of the PCR products
was confi rmed by gel electrophoresis of 8 μL PCR product on a
1.5% agarose gel in 1× Tris-acetate-EDTA buff er. Th e gels were
stained in ethidium bromide and visualized under UV light.
Principal Component AnalysisTh e correlation between real-time PCR cycle threshold (Ct)
and soil properties and MCPA mineralization was investigated
by partial-least-squares regression (Espensen, 2002) using Mat-
Lab (Mathworks Inc., 2006) with the PLS-toolbox software
(Eigenvector Research Inc., 2006). Th e partial-least-squares
regression models were validated using cross-validation with
the leave-one-out procedure. Outliers were identifi ed based on
their infl uence on the model (leverage) together with their pre-
diction residuals. Th e following variables were included in the
principal component analysis: accumulated 14C mineralization
on all sampling days, Corg
, soil pH, clay content, total CFU,
pseudomonad CFU, microbial activity parameters (ASA, FDA,
and SIR), sorption Kd, and tfdA real-time PCR Ct.
Results
CFU Counts and Microbial ActivityTh e mean CFU count on drop-plated 1/300 TSA was 1.1
× 107 CFU g soil–1 (2.0 × 106 to 1.0 × 108 CFU g soil–1) in the
topsoil samples and 4.3 × 106 CFU g soil–1 (9.6 × 103 to 4.5 ×
107 CFU g soil–1) in the subsoil samples. Th e mean count for
the pseudomonad subpopulation on Gould S1 agar was 2.5 ×
105 CFU g soil–1 (2.1 × 104 to 4.4 × 106 CFU g soil–1) in the
topsoil samples and 4.8 × 103 CFU g soil–1 (0–1.2 × 105 CFU
g soil–1) in the subsoil samples.
Th e microbial biomass (CFU and SIR) and activity (ISR,
ASA, and FDA) decreased by one to two orders of magnitude
from the topsoil to the subsoil (Vinther et al., 2007), and the
CV of these parameters was considerably higher in the subsoil
than in the topsoil (98–465% and 25–255%, respectively). In
general, the spatial distribution of the above microbiological
parameters (ISR, SIR, ASA, FDA, total CFU, and pseudo-
monad CFUs) corresponded to the spatial distribution of clay
and Corg
, as described in detail by Vinther et al. (2007).
MCPA Mineralization ExperimentsTh e accumulation of 14CO
2 in all topsoil samples followed
a sigmoidal curve, comprising a lag phase with little or no
mineralization, a steep segment with rapid MCPA mineraliza-
tion, and a plateau after mineralization had ceased.
Th e mineralization of MCPA varied little between topsoil
samples, all of which exhibited a lag phase of <7 d and a simi-
lar maximal mineralization rate of approximately 2% d−1 (Fig.
1A). Th e plateau was reached approximately 20 d after addi-
Fig. 1. Accumulated mineralization of [14C-Ring]-2-methyl-4-chlorophenoxyacetic acid (MCPA) during the 67-d incubation period shown for all 51 samples. Each sample was determined in triplicate with the variation being indicated by vertical bars. (A) Ap horizon. The mean value for each sampling day is also indicated (closed triangle). (B) Bs horizon. Representative samples (±SD) are shown for each of four groupings (A, B, C, and D) selected on the basis of their diverse but distinct patterns of MCPA mineralization.
1922 Journal of Environmental Quality • Volume 37 • September–October 2008
tion of MCPA. By the end of the incubation period (Day 67),
49.4 to 62.2% of the MCPA had mineralized (Table 2).
Th e mineralization of MCPA varied considerably in the 51
subsoil (Bs horizon) samples, with total mineralization at Day 67
ranging from 0.5 to 72.8%. Based on their MCPA mineraliza-
tion curves, the subsoil samples could be roughly divided into
four groups (Fig. 1B). Nine soil samples were characterized by a
sigmoidal mineralization curve comprised of a lag phase of ap-
proximately 15 d and a steep segment that reached a plateau after
approximately 40 d, with fi nal mineralization at Day 67 being 58
to 72.8% (Group A). Twenty-fi ve soil samples were characterized
by a sigmoidal mineralization curve comprised of a lag phase of
approximately 22 d and a slope that just reached a plateau at the
end of the 67-d incubation period, with fi nal mineralization be-
ing 52 to 71% (Group B). Eight soil samples were characterized
by a nonsigmoidal mineralization curve comprised of a lag phase
of approximately 22 d followed by linear mineralization, with
fi nal mineralization at Day 67 being 14 to 40%. Finally, nine soil
samples failed to exhibit any signifi cant mineralization (<2%)
during the 67-d incubation period.
Total accumulated mineralization of MCPA was >50%
in all of the topsoil samples and most of the subsoil samples.
2-Methyl-4-chlorophenoxyacetic acid mineralization potential
did not correlate with any of the soil parameters or microbio-
logic activity parameters tested (Table 3).
Th e spatial distribution of MCPA mineralization diff ered
between topsoil and subsoil samples (Fig. 2). Th us, as can be
seen from the contour plot of mineralization potential, there
is little variation among the topsoil samples (Ap horizon; CV
5%) but considerable variation among the subsoil samples (Bs
horizon; CV 56%). In the subsoil, areas of high and low min-
eralization potential are interspersed throughout the fi eld.
Soil Sorption of MCPASorption of MCPA to the topsoil and subsoil samples
varied within a limited and low range. Th us, Kd of the topsoil
samples ranged from 0.36 to 2.25 L kg−1 (mean, 1.04 L kg−1),
whereas that of the subsoil samples ranged from 0.03 to
4.16 L kg−1 (mean, 0.41 L kg−1) (Table 2). Th e CV was 49%
within topsoil samples but 175% within subsoil samples.
In the topsoil (Ap horizon), Kd for MCPA sorption to
soil correlated signifi cantly with clay content and Corg
content
(r = 0.60 and 0.93, respectively) (Table 3). In the subsoil (Bs
horizon), in contrast, Kd for MCPA correlated signifi cantly
with Corg
content (r = 0.83) but not with clay content. In the
Ap and Bs horizons, Kd correlated negatively with soil pH
(r = –0.54 and –0.57, respectively).
From the contour maps of the spatial distribution of the
MCPA sorption (Fig. 2), it can be seen that Kd was highest in
the northwestern corner of the fi eld and lowest toward the cen-
tral and southern part of the fi eld in the Bs horizon. Because Kd
correlated strongly with Corg
content, the contour maps for Kd
are similar to those for Corg
presented in Vinther et al. (2007).
Real-Time PCR of tfdA GenesReal-time PCR analysis revealed a low background level of
tfdA genes in the subsoil (2.5 × 102 to 2.0 × 104 tfdA gene cop-
ies g soil–1) and an even lower level in the topsoil. In view of this
discrepancy, it is suspected that the measurements of background
level in the topsoil are biased by PCR-inhibiting substances in the
soil DNA extracts. Th us, although the results show the intrafi eld
variation in the natural tfdA gene content within each horizon,
the results from the two horizons are not directly comparable.
In view of this, we decided to present the real-time PCR results
in terms of the Ct for PCR amplifi cation of tfdA gene templates
rather than converting these values to the absolute number of
tfdA genes. Th e conversion of Ct to the absolute number of tfdA
genes (assuming one copy per cell) is expressed by the equation
y = −4.17x + 44.41, where y is Ct, −4.17 is the slope constant,
and 44.41 is the y intercept. Th e formula is derived from the real-
time PCR standard curve (Fig. 3).
Mean accumulated 14CO2 resulting from MCPA mineraliza-
tion is shown versus mean real-time PCR Ct for each soil sample
Table 2. Sorption coeffi cient (Kd) and accumulated 14C-MCPA mineralization
at Day 67 in the Ap and Bs horizons.
Ap horizon (5–25 cm) Bs horizon (40–60 cm)
Parameter Mean† Range SD CV Mean† Range SD CV
% %
Kd (L kg−1) 1.04 0.36–2.25 0.5 49 0.41 0.03–4.16 0.7 175
14C mineralization (%) 57.0 49.4–62.0 2.8 5 46.2 0.5–72.8 25.9 56
† n = 51.
Table 3. Linear correlation matrix for [14C-Ring]-2-methyl-4-chlorophenoxyacetic acid (MCPA) sorption (Kd) and total accumulated 14C-
mineralization versus soil parameters and microbial activity in the Ap and Bs horizons.
Parameter Clay Corg
† pH ISR‡ CFU§ Pseudomonas SIR¶ ASA# FDA††
Ap horizon
Kd MCPA 0.60*** 0.93*** −0.54** – 0.29 0.24 – – –
14C mineralization −0.22 −0.08 0.19 0.12 0.10 0.06 −0.23 −0.03 −0.24Bs horizon
Kd MCPA 0.13 0.83*** −0.57** – 0.44** −0.10 – – –
14C mineralization 0.12 −0.06 0.09 – −0.17 0.13 0.06 0.11 –
** Signifi cant at the 0.01 probability level.
*** Signifi cant at the 0.001 probability level.
† Total organic carbon.
‡ In situ soil respiration.
§ Colony-forming units.
¶ Substrate-induced respiration.
# Arylsulfatase activity.
†† Fluorescein diacetate hydrolysis.
Fredslund et al.: Field-Level Variation in MCPA Mineralization and Sorption 1923
on each sampling day in Fig. 4.
Th e Ct tended to be low in topsoil
samples that started mineralizing
early (at Day 8), indicating a high
background level of tfdA genes
(Fig. 4A). During the steep seg-
ment of the mineralization curves
from Days 8 to 15, this diff erence
disappeared. Th us, there was no
apparent correlation between fi nal
mineralization level and the initial
presence of tfdA genes in the soil.
With the subsoil samples, no
correlation was found between
MCPA mineralization at the in-
dividual sampling points and the
background level of tfdA genes
(Fig. 4B).
Principal Component AnalysisPrincipal component analysis
did not reveal any parameters that
signifi cantly accounted for the
variation in MCPA mineraliza-
tion in the Ap horizon samples.
With the Bs horizon samples,
principal component analysis
was able to explain 77% of the
variation in Ct using 95% of the
variation in the following six parameters (in descending order
of impact): accumulated MCPA mineralization at Day 15,
Corg
, pH, accumulated mineralization at Day 39, CFU count
on TSA, and pseumonad CFU count on Gould S1 agar. Th ree
identifi ed outliers were removed from the data matrix. Th e abil-
ity of the model to predict Ct is illustrated in Fig. 5.
Discussion
Pedological and Geochemical AnalysesTh e CV was considerably higher for soil texture, pH, and C
org
content in the subsoil (CV, 15–145%) than in the topsoil (CV,
6–41%). In a similar investigation by Röver and Kaiser (1999), in
contrast, the coeffi cients of variation for moisture parameters, total
pore space, pH, and Corg
were found to be low (<10%). Th e diff er-
ences between our fi ndings and those of Röver and Kaiser (1999)
are probably attributable to diff erences in the geological history of
the two sites. In soils with a long history of cultivation, spatial het-
erogeneity is generally low. Although the soil investigated by Röver
and Kaiser (1999) was a luvisol developed from loess (loamy silt),
the soil investigated in the present study is raised seafl oor from the
Yoldia Sea and hence is more likely to be spatially heterogeneous.
MCPA MineralizationMineralization of MCPA in the topsoil (Ap horizon) was
in good accordance with previous studies on mineralization
of this phenoxyacetic acid herbicide in agricultural soils. Th e
studies report a short lag phase of 1 to 10 d (Crespin et al.,
2001; Jensen et al., 2004), a high maximal MCPA mineraliza-
tion rate (Baelum et al., 2006), and high total accumulated
mineralization when the plateau phase is reached (Helweg,
1987; Jensen et al., 2004; Th orstensen and Lode, 2001).
Fig. 2. Contour plots of total [14C-Ring]-2-methyl-4-chlorophenoxyacetic acid (MCPA) mineralization (left) and MCPA sorption coeffi cient (right) in the Ap and Bs horizons. Note the diff erence in scale in the contour plots. For the unit and range of each parameter see Table 2.
Fig. 3. Real-time polymerase chain reaction (PCR) standard curve based on triplicate tfdA measurements on R. eutropha AEO 106 (pRO101) amended in a 10-fold dilution series with subsequent DNA extraction from a sandy reference soil. Natural background levels of tfdA genes in topsoil and subsoil samples were determined using this standard curve (r = 0.998; PCR effi ciency, 73.8%). The relationship between cycle threshold (Ct) and the absolute number of tfdA genes (assuming one copy per cell) is expressed by the equation y = −4.17x + 44.41, where y is Ct, −4.17 is the slope constant, and 44.41 is the y intercept.
1924 Journal of Environmental Quality • Volume 37 • September–October 2008
High intrafi eld spatial variation in pesticide degradation
rate in topsoil has been reported for the insecticide carbofuran
(Parkin and Shelton, 1992), the triazine herbicides metribuzin
and simazine (Walker and Brown, 1983), and the phenylurea
herbicides isoproturon (Beck et al., 1996; Bending et al., 2001;
Bending et al., 2003; Parkin, 1993; Walker et al., 2001; Walker
et al., 2002) and chlorotoluron (Walker et al., 2002).
Intrafi eld spatial variation in MCPA mineralization has not
previously been studied in detail. Our fi nding that mineraliza-
tion of MCPA exhibits very little spatial variation in topsoil is
not unexpected because MCPA is considered to be an easily
degradable herbicide.
Th e high rate of MCPA mineralization and the sigmoidal
nature of the mineralization curve indicate growth and multiplica-
tion of the bacteria initially present in the soil samples. Because the
mineralization of MCPA follows approximately fi rst-
order kinetics after an initial lag phase in all topsoil
samples, it is presumably linked to growth of the
degrading organisms. Th e presence of the phenoxya-
cetic acid herbicide 2,4-D in concentrations as low
as 50 μg L–1 has been shown to cause limited growth
of a 2,4-D degrader in soil (Jacobsen and Pedersen,
1992). In the present study and in previous studies,
we have rarely found total mineralization rates ex-
ceeding 70% (Baelum et al., 2006; Mortensen and
Jacobsen, 2004), indicating that a high proportion
of the 14C in the MCPA assimilated by the soil mi-
croorganisms is converted to new microbial biomass.
Th is provided further evidence for growth-linked
degradation of MCPA.
Th e mineralization potential of most samples
from the Bs horizon was high. Th is indicates that
the subsoil microbiota must have been exposed to
phenoxyacetic acid herbicides previously because
the ability to degrade them is acquired through
repeated exposure and resultant adaptation of the
bacterial community (Robertson and Alexander,
1994). Th e latter authors found that degradation
of 2,4-D is growth linked, with approximately
10% of the mineralized carbon being incorpo-
rated into microbial biomass, thereby confi rming
the original fi nding of Jensen and Petersen (1952)
that repeated application of the herbicide en-
hances the degradation rate due to acclimatization
of the phenoxyacetic acid herbicide-degrading
microbial population.
Th e number of MCPA-degrading bacteria in
the subsoil samples is likely to be less than 10% of
that in the topsoil samples due to the general olig-
otrophic conditions, as is refl ected by the total soil
bacteria CFU on TSA and the pseudomonad CFU.
Th e longer lag phase of MCPA mineralization in the
subsoil samples is probably attributable to the low
bacterial density caused by the oligotrophic condi-
tions because mineralization of MCPA is based on
growth of the degrading community.
Th e spatial variation in MCPA mineralization
potential in the Bs horizon was high, but no correlation was
found to any of the parameters tested. Th e mineralization pat-
terns seen with subgroups A and B of the subsoil samples sug-
gest that mineralization is based on growth and multiplication
of the degrading bacteria, whereas that seen with subgroup C
indicates co-metabolic mineralization or limitation of the degrad-
ing organisms by lack of nutrients or enhanced predation. Th is
is supported by the fi ndings of Bending et al. (2001) that areas
where isoproturon degrades rapidly are characterized by higher 14C-isoproturon mineralization and higher 14C microbial biomass
(indicating growth-linked degradation) than areas where it de-
grades slowly.
In a fi eld study, Gonod et al. (2003) found that 2,4-D min-
eralization potential was extremely heterogeneous among mil-
Fig. 4. Mean accumulated 14C-MCPA mineralization (%) versus mean real-time polymerase chain reaction (PCR) cycle threshold (Ct) for the formation of PCR product on each day of the 14CO
2 sampling days (8, 15, 22, 29, 39, and 67). (A): Ap
horizon. (B) Bs horizon.
Fredslund et al.: Field-Level Variation in MCPA Mineralization and Sorption 1925
limeter-size soil aggregates and that intrafi eld spatial variation was
high at the microhabitat scale. In a later study of the variability of
potential aerobic microbial 2,4-D mineralization at spatial scales
ranging from fi eld to microhabitat level (cm-scale) in a cultivated
topsoil (Gonod et al., 2006), it was found that 2,4-D mineraliza-
tion was spatially structured in hotspots at the microhabitat (cm)
scale, with the variation increasing from fi eld to meter scale, and
further from meter to centimeter scale. Th e authors attributed this
variation to the presence of organic compounds supporting growth
and co-metabolism of the 2,4-D in the degrading microorganisms.
Our results based on sampling distances of 5 or 35 m in the 3-ha
sampling grid suggest that MCPA degradation potential is homog-
enously distributed in topsoil at the fi eld level. Th e distribution was
also homogenous at a smaller scale because there was little variation
between triplicate 10-g subsamples of each topsoil sample.
Heterogeneous herbicide exposure of the underlying subsoil
due to preferential streaming of drainage water could explain
the intrafi eld variation in MCPA mineralization seen in the Bs
horizon samples. Th e mineralization of MCPA has previously
been shown to vary between triplicate soil samples from the
same B horizon sampling point (Baelum et al., 2006). In the
present study the soil samples were very carefully mixed on col-
lection, and the variation between triplicate samples was found
to be very low for all but 6 of the 51 Bs horizon samples.
Because no correlation was found between MCPA miner-
alization and sorption or soil pH, biodegradation of MCPA at
the study site is not determined by these parameters.
In a parallel study by Vinther et al. (2007), mineralization
and sorption of the pesticides glyphosate, metribuzin, and
triazinamin were determined in the same fi eld samples used in
the present study. It was concluded that the spatial distribu-
tion of 14C mineralization in the Ap horizon diff ered for the
three pesticides because the mineralization rate was high only
for glyphosate. Mineralization of glyphosate correlated posi-
tively with all measured soil and microbiological parameters,
whereas mineralization of metribuzin and triazinamin gener-
ally correlated negatively with these parameters. Th e positive
correlation between mineralization of glyphosate and the
measured soil and microbiological parameters was assumed
to be due to the strong affi nity of glyphosate to clay particles
and humus components in the soil, which again would lead
to close contact between the glyphosate and the degrading
organisms present in the soil (which degrade glyphosate co-
metabolically). Degradation of metribuzin and triazinamin is
also thought to occur by co-metabolism, although degrada-
tion was very low, with a maximum of 3.1% (Vinther et al.,
2007). In the present study, degradation of MCPA in the
topsoil seemed to support growth of the degrading microor-
ganisms in the topsoil, whereas that in the subsoil followed
growth-linked kinetics or occurred co-metabolically, thereby
resulting in slower degradation kinetics. Th e intersample
variation in subsoil MCPA mineralization could be attribut-
able to diff erences in exposure of the subsoil to phenoxyacetic
acid herbicides because exposure has probably been limited to
certain parts of the soil matrix.
CFU Counts and Microbial ActivityMineralization of MCPA did not correlate with soil mi-
crobial activity or CFU counts. Th is fi nding is in line with the
results of the parallel analysis of the spatial variation in me-
tribuzin and triazinamin mineralization at the same site (Vin-
ther et al., 2007); as in the present study, no signifi cant correla-
tion was found to any of the microbiological parameters tested.
However, variation in glyphosate mineralization was found to
correlate positively with the microbial activity parameters SIR,
ASA, FDA, and ISR (Vinther et al., 2007). Th e sigmoidal na-
ture of the MCPA mineralization curves for all topsoil samples
(Fig. 1) indicates that MCPA is mineralized by a population
of microorganisms that are able to use MCPA for growth. We
have previously seen growth of microbial degraders during min-
eralization of MCPA in a sandy soil (Baelum et al., 2006).
Soil Sorption of MCPATh e MCPA sorption (expressed as K
d) found in this study
lies within the range previously reported for MCPA (Helweg,
1987; Socias-Viciana, 1999). Variation at the fi eld scale was
slightly lower in the Ap horizon (CV 49%) than in the Bs ho-
rizon (75%). Variation in Corg
content was also higher in the Bs
horizon. In general, variation in all the parameters tested tend-
ed to be greatest in the undisturbed soil layers of the fi eld. Th e
sorption of MCPA was highly signifi cantly correlated to Corg
content in both horizons and to clay content in the Ap horizon.
Soil organic carbon and soil clay and mineral composition
have been shown to infl uence adsorption of MCPA and 2,4-D
(Ogram et al., 1985; Th orstensen et al., 2001). In a long-term fi eld
experiment on soils amended with diff erent types and amounts of
organic matter, Haberhauer et al. (2001) found that the origin of
the soil organic matter seems to be crucial for the sorption behavior
of MCPA and that sorption is inversely correlated to pH.
Examining 10 soils diff ering in clay and Corg
content, Bo-
lan and Baskaran (1996) found that Kd for 2,4-D increased
with increasing soil Corg
, whereas the rate of degradation
decreased. At a soil Corg
content exceeding 120 g kg−1, how-
ever, Kd and degradation rate increased, suggesting enhanced
microbial activity in these soils. In a sandy soil, MCPA min-
eralization was found to correlate strongly with Kd after the
addition of artifi cial sorbents (crushed peat and activated
carbon) (Jensen et al., 2004). Th e authors concluded that it is
Fig. 5. Correlation between predicted cycle threshold (Ct) (partial-least-squares regression model) and measured Ct.
1926 Journal of Environmental Quality • Volume 37 • September–October 2008
important to take the bonding strength of MCPA into con-
sideration when estimating pesticide degradation in soil.
Acidic pesticides sorb to organic soil colloids in a pH-depen-
dent manner, with sorption being greatest under acidic condi-
tions where the pesticides are sorbed in their neutral form (We-
ber, 1972). At pH of 5.4 to 6.2 (the mean values found in the
present study), MCPA is anionic (pKa = 3.07), and electrostatic
repulsion between the anionic herbicide and negatively charged
soil particles could reduce sorption (Helweg, 1987).
Walker et al. (1989) measured sorption and degradation
rates of chlorsulfuron and metsulfuron-methyl in soils taken
from diff erent depths and found sorption of both herbicides
to be inversely correlated with soil pH and positively corre-
lated with Corg
content. Th ey suggested that soil pH was the
main determinant of sorption in most soils. Several authors
have suggested that soil pH is a determinant of herbicide bio-
degradation because pH tends to be higher at sites where the
degradation rate is particularly high than at sites where it is
slower (Cox et al., 1996; Walker et al., 2001).
In the present study, Kd for MCPA correlated negatively
with pH (CV, –0.54 and –0.57 in the Ap and Bs horizons,
respectively). Our detailed study of one fi eld supports the
overall fi ndings that Corg
content and soil pH are the main
determinants of MCPA sorption in sandy soils (Haberhauer
et al., 2001; Th orstensen et al., 2001).
Real-Time PCR of tfdA GenesOur initial hypothesis that high background tfdA levels would
be refl ected in a short lag-phase before onset of mineralization was
not confi rmed. Real-time PCR analysis of tfdA genes involved in
MCPA catabolism revealed only a weak correlation between a high
background level of tfdA genes and a high initial MCPA degrada-
tion rate in individual samples. Total MCPA degradation at the
end of the 67-d incubation period was not linked to the initial
presence of tfdA genes in the samples. Th us, although biodegrada-
tion of MCPA at fi eld scale is high in samples with a high initial
level of tfdA genes, the fact that the initial level of tfdA genes is low
does not preclude mineralization potential being high.
Th e tfdA primers used to enumerate the background level
of tfdA genes were designed on the basis of tfdA-I and tfdA-III
type sequences retrieved from GenBank (Baelum et al., 2006).
Th e lack of correlation between the tfdA gene level in a sample
and its MCPA mineralization potential may be due to the initial
presence of other classes of tfdA genes because the identifi ed tfdA
genes vary (Fulthorpe et al., 1995; Smejkal et al., 2001). Whether
or not all the tfdA gene alleles that mediate MCPA catabolism are
targeted in the present real-time PCR analysis is unclear.
Th e presence or absence of other genes involved in the meta-
bolic pathway of MCPA probably explains the discrepancy be-
tween the tfdA gene level in a sample and its MCPA mineraliza-
tion potential. Both 2,4-dichlorophenol and dichlorocatechol
could have been produced and sorbed to the soil because the
genes necessary for metabolism of these intermediary products
were not present within the microorganisms in the samples.
Th us, the background level of tfdA-I and tfdA-III genes may not
refl ect the full potential of a soil sample to mineralize MCPA.
Soil microcosm experiments on sandy soils from the Dan-
ish outwash plain in southern Jutland have recently shown that
formation of the phenolic metabolite MCP in topsoil is associ-
ated with the presence of tfdA genes belonging to the tfdA Class
I. After a lag phase, mineralization of the MCPA ring structure
was initiated by the multiplication of organisms carrying the tfdA
Class III genes (Baelum et al., 2006). From analysis of tfdA func-
tional genes, Baelum et al. (2006) and de Lipthay et al. (2002)
concluded that the number of copies of a catabolic gene in soil
before contaminant exposure might not necessarily refl ect the
size of the specifi c degrader population. In the present study, the
DNA was extracted from the soil before application of MCPA.
Th us, the results do not refl ect the likely increase in the signal
caused by growth of microorganisms harboring tfdA genes.
It is known that a population of tfdA gene bearing bacteria can
be maintained even if a soil is not exposed to phenoxyacetic acid
herbicides for a period of many years (Baelum et al., 2006). Th e
present study shows that tfdA genes are present in detectable num-
bers in topsoil and subsoil samples throughout an agricultural fi eld.
ConclusionTh e main fi nding of this study is that the mineralization of
MCPA in a sandy soil with low MCPA sorption capacity could
not be predicted from microbial activity, tfdA gene pool size, or
geochemical parameters. Mineralization of MCPA was found to
follow growth-linked degradation kinetics in topsoil but followed
growth-linked kinetics or occurred co-metabolically in the subsoil.
Th is contrasts with mineralization and sorption of the pesticides
glyphosate, metribuzin, and methyltriazinamin at the same site, all
of which were biodegraded co-metabolically (Vinther et al., 2007).
Spatial variation in MCPA sorption was low in the topsoil
and the subsoil, with Kd ranging from 0.36 to 4.16 L kg−1.
Sorption correlated strongly with soil Corg
in both horizons
and negatively with soil pH. No signifi cant correlation could
be established between MCPA sorption and MCPA mineral-
ization potential.
We conclude that MCPA mineralization potential is high
and homogenously distributed in the topsoil (Ap horizon)
but exhibits considerable variation in the subsoil (Bs horizon).
Th is is the fi rst study to report that MCPA mineralization
potential varies considerably in subsoil. We suggest that this
variation is attributable to diff erences in prior exposure of the
subsoil to phenoxyacetic acid herbicides because this is lim-
ited to certain parts of the soil matrix.
AcknowledgmentsWe thank Mette Andersen, Pia Jakobsen, and other
members of the technical staff at GEUS and DIAS who
participated in the KUPA project. We thank Jacob Bælum
for sharing his experience with the tfdA real-time PCR. Th is
work was funded by the Danish Ministry of the Environment
and the Danish Ministry of Food, Agriculture and Fisheries
through Act-157-2000.
Fredslund et al.: Field-Level Variation in MCPA Mineralization and Sorption 1927
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