An NMR method to characterize multiple water compartments on mammalian collagen

8
An NMR method to characterize multiple water compartments on mammalian collagen Gary D. Fullerton a, * , Elena Nes a , Maxwell Amurao a , Andres Rahal a , Lada Krasnosselskaia a , Ivan Cameron b a Radiology Department, University of Texas HSCSA, Floyd Curl Drive, San Antonio, TX 78229-3900, United States b Cellular and Structural Biology Department, University of Texas HSCSA, Floyd Curl Drive, San Antonio, TX 78229-3900, United States Received 30 May 2005; accepted 30 September 2005 Abstract A molecular model is proposed to explain water 1 H NMR spin-lattice relaxation at different levels of hydration (NMR titration method ) on collagen. A fast proton exchange model is used to identify and characterize protein hydration compartments at three distinct Gibbs free energy levels. The NMR titration method reveals a spectrum of water motions with three well-separated peaks in addition to bulk water that can be uniquely characterized by sequential dehydration. Categorical changes in water motion occur at critical hydration levels h (g water/g collagen) defined by integral multiples N ¼ 1, 4 and 24 times the fundamental hydration value of one water bridge per every three amino acid residues as originally proposed by Ramachandran in 1968. Changes occur at (1) the Ramachandran single water bridge between a positive amide and neg- ative carbonyl group at h 1 ¼ 0.0658 g/g, (2) the Berendsen single water chain per cleft at h 2 ¼ 0.264 g/g, and (3) full monolayer coverage with six water chains per cleft level at h 3 ¼ 1.584 g/g. The NMR titration method is verified by comparison of measured NMR relaxation compart- ments with molecular hydration compartments predicted from models of collagen structure. NMR titration studies of globular proteins using the hydration model may provide unique insight into the critical contributions of hydration to protein folding. Ó 2005 International Federation for Cell Biology. Published by Elsevier Ltd. All rights reserved. Keywords: Collagen; Protein hydration; NMR relaxometry; MRI; Proton relaxation; Tendon; Hydration compartments 1. Introduction The scientific community generally accepts that protein hy- dration and protein induced water structuring are fundamental sources of protein structural behaviors that support life func- tions. Collagen is frequently selected as the model protein to elucidate structural and hydration relationships (Leikin et al., 1994, 1995, 1997, 2002; Privalov, 1982). Tendon has high con- centration of Type I collagen approaching 100% of the dry biomass in some instances. Molecular tropocollagen crystal- lizes spontaneously and as a result significant new structural information is available with ever improving accuracy from X-ray diffraction studies of both native and molecular ana- logues of collagen (Bella and Berman, 1996; Bella et al., 1994, 1995, 1996; Berisio et al., 2002; Fraser et al., 1979; Kramer et al., 1998, 1999, 2000, 2001; Miller and Scheraga, 1976; Okuyama et al., 1977; Ramachandran, 1967; Rich and Crick, 1961; Yonath and Traub, 1969). The more recent, high-resolution studies consistently show a water bridge net- work surrounding the collagen molecule. Structural studies provide a molecular model of collagen sup- porting the existence of three distinct categories of water bridges. The most tightly bound consists of one highly immobilized ‘‘wa- ter bridge’’ per every three protein residues h b ¼ 18 Da/ (3 91.2 Da) ¼ 0.0658 g water/g protein as originally proposed by Ramachandran (1967), Fullerton and Amurao (2005), and Ramachandran and Ramakrishnan (1968). A second less immo- bilized water fraction consists of three additional cleft waters per tripeptide unit residing in the three groove-like depressions between the peptide chains of the triple helix h c ¼ 3 h b ¼ 0.197 g water/g. The water bridge and three cleft waters * Corresponding author. E-mail address: [email protected] (G.D. Fullerton). 1065-6995/$ - see front matter Ó 2005 International Federation for Cell Biology. Published by Elsevier Ltd. All rights reserved. doi:10.1016/j.cellbi.2005.09.009 Cell Biology International 30 (2006) 66e73 www.elsevier.com/locate/cellbi

Transcript of An NMR method to characterize multiple water compartments on mammalian collagen

Cell Biology International 30 (2006) 66e73www.elsevier.com/locate/cellbi

An NMR method to characterize multiple water compartmentson mammalian collagen

Gary D. Fullerton a,*, Elena Nes a, Maxwell Amurao a, Andres Rahal a,Lada Krasnosselskaia a, Ivan Cameron b

a Radiology Department, University of Texas HSCSA, Floyd Curl Drive, San Antonio, TX 78229-3900, United Statesb Cellular and Structural Biology Department, University of Texas HSCSA, Floyd Curl Drive, San Antonio, TX 78229-3900, United States

Received 30 May 2005; accepted 30 September 2005

Abstract

A molecular model is proposed to explain water 1H NMR spin-lattice relaxation at different levels of hydration (NMR titration method ) oncollagen. A fast proton exchange model is used to identify and characterize protein hydration compartments at three distinct Gibbs free energylevels. The NMR titration method reveals a spectrum of water motions with three well-separated peaks in addition to bulk water that can beuniquely characterized by sequential dehydration. Categorical changes in water motion occur at critical hydration levels h (g water/g collagen)defined by integral multiples N ¼ 1, 4 and 24 times the fundamental hydration value of one water bridge per every three amino acid residues asoriginally proposed by Ramachandran in 1968. Changes occur at (1) the Ramachandran single water bridge between a positive amide and neg-ative carbonyl group at h1¼ 0.0658 g/g, (2) the Berendsen single water chain per cleft at h2¼ 0.264 g/g, and (3) full monolayer coverage withsix water chains per cleft level at h3¼ 1.584 g/g. The NMR titration method is verified by comparison of measured NMR relaxation compart-ments with molecular hydration compartments predicted from models of collagen structure. NMR titration studies of globular proteins using thehydration model may provide unique insight into the critical contributions of hydration to protein folding.� 2005 International Federation for Cell Biology. Published by Elsevier Ltd. All rights reserved.

Keywords: Collagen; Protein hydration; NMR relaxometry; MRI; Proton relaxation; Tendon; Hydration compartments

1. Introduction

The scientific community generally accepts that protein hy-dration and protein induced water structuring are fundamentalsources of protein structural behaviors that support life func-tions. Collagen is frequently selected as the model protein toelucidate structural and hydration relationships (Leikin et al.,1994, 1995, 1997, 2002; Privalov, 1982). Tendon has high con-centration of Type I collagen approaching 100% of the drybiomass in some instances. Molecular tropocollagen crystal-lizes spontaneously and as a result significant new structuralinformation is available with ever improving accuracy fromX-ray diffraction studies of both native and molecular ana-logues of collagen (Bella and Berman, 1996; Bella et al.,

* Corresponding author.

E-mail address: [email protected] (G.D. Fullerton).

1065-6995/$ - see front matter � 2005 International Federation for Cell Biolog

doi:10.1016/j.cellbi.2005.09.009

1994, 1995, 1996; Berisio et al., 2002; Fraser et al., 1979;Kramer et al., 1998, 1999, 2000, 2001; Miller and Scheraga,1976; Okuyama et al., 1977; Ramachandran, 1967; Rich andCrick, 1961; Yonath and Traub, 1969). The more recent,high-resolution studies consistently show a water bridge net-work surrounding the collagen molecule.

Structural studies provide a molecular model of collagen sup-porting the existence of three distinct categories of water bridges.The most tightly bound consists of one highly immobilized ‘‘wa-ter bridge’’ per every three protein residues hb¼ 18 Da/(3� 91.2 Da)¼ 0.0658 g water/g protein as originally proposedby Ramachandran (1967), Fullerton and Amurao (2005), andRamachandran and Ramakrishnan (1968). A second less immo-bilized water fraction consists of three additional cleft watersper tripeptide unit residing in the three groove-like depressionsbetween the peptide chains of the triple helix hc¼ 3�hb¼ 0.197 g water/g. The water bridge and three cleft waters

y. Published by Elsevier Ltd. All rights reserved.

67G.D. Fullerton et al. / Cell Biology International 30 (2006) 66e73

complete a chain of four water molecules per tripeptide. Thesechains form a triple helix of water in the three clefts of the a-protein chains of the collagen triple helix. Cleft water was pro-posed by Berendsen (1962) and discussed by others (Lim,1981; Privalov, 1982).Recently our laboratory showed that the re-maining water on native collagen (w1.62 g water/g protein) is inthe first interfacial monolayer him¼ 5� 0.263¼ 1.315 g water/g protein at higher energy relative to the first two compartmentsbut still lower than the free energy of bulk water (Fullerton andAmurao, 2005). As a result of these three water compartments wepredict NMR detectable changes in water motion at h1¼hb¼ 0.0658, h2¼ hbþ hc¼ 0.264 and h3¼ hbþ hcþ him¼1.58 g water/g protein or athi ¼ Ni � 0.0658 forNi ¼ 1, 4 and24.

This study tests the hypothesis that that the NMR spin-lattice relaxation time of water on native collagen is not char-acteristic of any of the three molecular compartments buta weighted average due to fast exchange between three hydra-tion fractions or water phases on the protein surface(Zimmerman and Brittin, 1957). The relaxation characteristicsof all three water phases can, however, be extracted and char-acterized by sequential NMR measurements using a titrationof water content (Fullerton et al., 1982, 1986). Tendon isuniquely suited to identifying the molecular origin of the threehydration fractions that may be typical of proteins in general.The collagen molecule is highly immobilized and aligned inprotein fiber structure that suppresses proton NMR signalfrom the protein due to static dipole coupling. The study con-firms that proton NMR signal emanates only from the liquidwater that shows the presence of three distinct hydration frac-tions in fast exchange equilibrium. The compartments ex-tracted using the NMR titration method quantitativelyconfirm the three molecular water bridge environments identi-fied in the preceding paragraph. The correlation of proteinNMR titration measurements with a molecular model of waterbridges holds promise as a general model to evaluate hydrationof both fibrillar and globular proteins.

2. Materials and methods

2.1. NMR titration measurements

Samples of bovine flexor tendon from three animals (age and sex un-

known) were obtained from a local slaughter house, dissected on site, diced

to 3 mm3 cubes and placed in separate pre-weighed 1$ diameter NMR sample

tubes for each animal. Tubes were immediately sealed to prevent dehydration.

The initial sample volume was approximately 6 cc when wet and approximately

3 cc when dry. Preliminary measurements of T1 relaxation reported here

were made at 10.7 MHz on a Praxis II pulsed NMR device with a primary

magnetic field strength of 0.25 T. The initial research plan was to use these

less accurate but rapid measurements at 10.7 MHz to provide pilot data for de-

signing of more accurate and complete experiments as a function of tempera-

ture at 500, 700 and 900 MHz. Results at 0.25 T are, however, sufficient to

substantiate the hypothesis and are therefore presented as stand alone experi-

ments. Praxis measurements of T1 use the saturation recovery (90-t-90) pulse

sequence with a repetition time TR exceeding five times the longest T1 relax-

ation time for the sample. The 90 � pulse is approximately 13 ms (bandwidth in

excess of 100 kHz). The sample chamber was equilibrated in the instrument at

22� 1 �C for at least 1 h prior to each measurement. Samples were out of the

vacuum for approximately 1e4 h. Typical measurement times in the NMR unit

were approximately 5e10 min. Random orientation of the tendon with respect

to the magnetic field was used to eliminate possibility of residual orientation

dependence. The signal after a recovery delay t was measured as an amplitude

of the free induction decay, A(t), with the first time point at 26 ms. Each data

point samples signal for 1 ms and 10 points following the peak signal were av-

eraged to reduce the measurement noise.

Each relaxation measurement consisted of 31 amplitude measurements with

a total of 30 sequential delay times with even increments of w20 ms each for

a maximum delay time of 30�Dt as shown in Fig. 1. Although delay times

were adjusted to evaluate signal amplitude variation over as much as two orders

ofmagnitude only single exponent T1 decaywas observed in all instances.Meas-

urements were repeated three times to improve the signal-to-noise ratio to 300:1

(0.3% noise) at the initial hydration level. A non-linear regression fit to the data

was calculated as shownwith a single exponent decay using twofitting constants,

A(N) and T1, using the equation A(N)� A(t)¼ A(N)(e�t/T1) and non-linear

regression from the Graph Pad program (Motulsky, 2003). The T1 was measured

for the tendon samples over the entire range of hydration fromnative hydration to

completely dry protein using the procedure described below. The tissue mass Mt

was measured at each hydration level to allow calculation of h ¼ Mw/Mp fol-

lowing measurement of the dry protein mass Mp (see next paragraph). The

mass of salt and other cosolutes was neglected for these calculations.

The original sample weights were approximately 5.4 g of tendon which

when fully dehydrated decreased to approximately 2.3 g of dry mass. Initial

dehydrations were achieved by placing the open NMR tubes in a vacuum

chamber at approximately 0.25 atmospheric pressure. Samples were removed

at intervals ranging initially from approximately 1 h to several days to achieve

significant reduction in the sample water content. After achieving equilibrium

mass at room temperature the temperature of the vacuum oven was increased

to 90 �C and the dehydration extended for another 30 days with intermittent

measurements of T1 taken until a new equilibrium and final dry mass for

the protein were achieved. The dehydration and T1 measurement protocol

for the tendon extended over a total period of approximately 3 months. An ex-

tended drying period was undertaken to assure hydration equilibrium over the

entire volume of the tendon. Due to the slow dehydration rate no measurable

dependence on the time interval between removal from the vacuum oven and

NMR measurement was detectable between 1 and 24 h (data not shown). The

measurement process was repeated for all three samples. Results for all three

samples were similar but only two are reported as one sample tube broke dur-

ing the final heating phase of the experiment.

2.2. NMR titration analysis of spin-lattice relaxation data

The water bridge hydration hypothesis identifies three hydration water

fractions in addition to a bulk water phase as shown in Fig. 2. For the protein

Fig. 1. T1 analysis of a saturation recovery curve for bovine tendon at the na-

tive hydration level is shown here. Solid circles stand for data points. Solid line

is a fit to the function lnðAðNÞ � AðtÞÞ ¼ at, where t is a delay time, AðtÞi is

an FID amplitude after the delay t and AðNÞ ¼ Aðt[T1Þ and a is the regres-

sion fit constant a ¼ 6:7 s�1, T1 ¼ 1=a ¼ 149� 1 ms, R2¼ 0.9992, signal-

to-noise ratio was never lower than 20:1.

68 G.D. Fullerton et al. / Cell Biology International 30 (2006) 66e73

Fig. 2. (a) Conceptual cartoon for Zone 1 includes bulk water and shows the Gibbs free energy relationships of water molecules in different water bridge bonding

arrangements on the collagen molecule. At low hydration levels water molecules accumulate in the ‘‘Water Bridges’’ at the lowest free energy level. Higher energy

compartments are filled at higher hydrations by sequential filling of the ‘‘Cleft Water’’ and ‘‘Interfacial Monolayer Water until water spills over into the ‘‘Bulk’’

water compartment. (b) There is fast exchange of protons between these compartments when the tissue contains sufficient water to fill all the hydration compart-

ments and maintains a bulk water fraction as well. As protons sample all compartments during decay the NMR spin-lattice decay is monoexponential.

in dilute solution the hydration fractions are assumed to be in fast exchange

equilibrium on T1 relaxation scale such that the spin-lattice relaxation rate is

1=T1 ¼X

fi1=T1i

where fi is the fraction of water and 1/T1i is the spin-lattice relaxation rate of

the ith water fraction. There are three water fast exchange zones (Zones 1, 2and 3) and one protein fast exchange zone (Zone 4) to express relaxation

rate as a function of inverse hydration 1/h over the entire range h ¼ 0 (dry pro-

tein) to infinity (infinitely dilute protein solution). The definition of the hydra-

tion zones is summarized as follows:

Zone 1 (linear): all hydration compartments full and in fast exchange with

a variable bulk water compartment;

Zone 2 (linear): bulk water depleted leaving cleft water and water bridge

compartments full and in fast exchange with a variable interface monolayer

compartment;

Zone 3 (linear): bulk water and interface monolayer compartments depleted,

water bridge compartment full and in fast exchange with a variable cleft

water compartment; and

Zone 4 (non-linear): bulk, interface monolayer and cleft water compart-

ments depleted leaving tripeptide segments on the protein either occupied

or not occupied (with or without water bridges). Each tropocollagen has

many water bridge sites (w1000) to yield mean relaxation rate by spin-

diffusion during transition from full bridges to completely dry protein

relaxation rates.

The dilute protein case is shown in Figs. 2 and 3 as Zone 1 where 1/h �1/h3. The water consists of two fractions, hydration water

h3¼ hbþ hcþ him¼ 1.58 g water/g protein and bulk water of mass Mo. The

total hydration water mass M3¼ h3� Mp allows calculation of the fraction

of water f3¼ h3� Mp/Mw that interacts directly with the protein surface while

the bulk water fraction fo¼ Mo/Mw has the motional properties of pure bulk

water. The sum of all fractions f3þ fo¼ 1. The relaxation rate (R ¼ 1/T1) of

water is the weighted sum of the relaxation rates for bulk water, Ro, and the

mean relaxation rate for hydration water R3

fo þ f3 ¼ 1f3 ¼ h3 �Mp=Mw ¼ h3=hR1 ¼ foRo þ f3R3 ¼ Ro þ f3ðR3 �RoÞ ¼ Ro þ h3ðR3 �RoÞ1=h

where h ¼ Mw/Mp¼ the measured hydration of the sample.

The monolayer hydration h3¼ 1.58 g water/g dry protein is known from

the molecular model while mass of the tissue Mt, dry mass of the protein

Mp and relaxation rate of the tissue R1(h) are measured directly. The mass

of water Mw¼ Mt� Mp is calculated. Linear regression fits allow extraction

of the fitting constants Ro, the relaxation rate of the outer water fraction

(bulk water for Zone 1) and the mean relaxation rate R3 of the hydrated pro-

tein. The same method applied to Zone 2 gives the relaxation rate of the inter-

facial monolayer water Rim and Zone 3 analysis gives the relaxation rate for

cleft water Rc.

Zone 4 differs from the other zones because it describes the transition from

collagen with water bridges to collagen without bridges. There is a broad spec-

trum of NMR signal from protons (hydrogen nuclei) covalently bound in the

protein. A fraction of this protein signal appears in the water resonance range.

In Zone 4 the proton signal comes from solid-like protein in two possible

states either with or without water bridges. The observed change in relaxation

rate indicates that protein with water relaxes slightly more rapidly than colla-

gen without water bridges. The water bridges accelerate relaxation for protein

without structural water. This is likely through the well known mechanism of

spin-diffusion in solids (Edzes and Samulski, 1977). Thus there are two pro-

tein categories: category A with water bridges and category B without water.

As the signal from ‘‘solid like’’ water is much smaller than from protein we

can neglect the signal amplitude due to the water and calculate the relaxation

rate as follows:

RA¼ the relaxation rate of protein hydrogen nuclei with water bridges

RB¼ the relaxation rate of the protein hydrogen nuclei without water

bridges

fA¼ the fraction of the protein having one bridge per three residues

fB¼ the fraction of protein without a water bridge per three residues

h ¼ the hydration¼ Mw/Mp

hb¼ the single bridge hydration fraction

fA¼ (hMp)/(hbMp)¼ h/hb

fB ¼ 1� h=hbR1 ¼ fARA þ fBRB

R1 ¼ RB þ ½ðRA � RBÞ=hb�h

This last equation R1 is a linear function of h while the other three

equations are linear functions of 1/h. We plot all zones as a function of

1/h as this gives three linear sections and one curved line for Zone 4.

The four equations must agree at the intersections of adjacent sections.

This allows simplification to reduce the number of fitting constants to

five to yield the relationships summarized in Table 1.

2.3. Statistical analysis

The 1/T1 relaxation rate as a function of 1/h was evaluated using non-linear

least squares regression fit to the four zone multi-segment equations defined in

69G.D. Fullerton et al. / Cell Biology International 30 (2006) 66e73

Fig. 3. ‘‘Zonal Analysis’’ of relaxation rate versus the reciprocal of hydration

1/h. A multi-segment non-linear least squares regression fit (R2¼ 0.9916) for

n ¼ 74 measurements over the entire range of hydration from native to com-

pletely dry protein residue demonstrates the ability of the Molecular Model

to explain relaxation behavior. (A) Shows entire range of experiments. (B)

Focuses on data from Zone 3. (C) Focuses on data from Zone 2. Each zone is

identified as a range of hydrations by the molecular model as follows: Zone

1: h > 1.584 g water/h dry mass, Zone 2: 1.584 g/g> h > 0.264 g/g, Zone 3:

0.264> h > 0.0658 g/g and Zone 4: h < 0.0658 g/g. Extrapolation of Zone 2

data to Mp/Mw¼ 0 shows that the relaxation rate for bulk water Ro¼ 0.37 s�1

is significantly different p < 0.05 than Rim¼ 1.354 for surface water (see Table

2). We note that although Zone 2 is well described by the linear relationship

used in the present analysis. There are possible 2nd order regularities near

Mp/Mw¼ 1.3 and 3.0 g solids/g water. This could reflect small changes in wa-

ter organization in the interfacial monolayer fraction as neighboring water

molecules are removed. Note the lack of data in Zone 1 for native tendon

which indicates absence of bulk-like water on this tissue (see text for details).

Table 3 to evaluate the ability of the proposed molecular model to describe re-

laxation results over the entire hydration range (Motulsky, 2003).

3. Results

The results from samples S1 are shown in Fig. 3. Results onS2 were similar but not shown for brevity.

The details of the least squares fits are summarized inTable 2 for both the tendon S1 and S2 measurement series.The goodness of fit for tendon S1 was R2¼ 0.9916 andR2¼ 0.9910 for tendon S2. The best fit value, standard errorand 95% confidence interval for Rim, Rc, Rbp and Rpr are pre-sented as well as the direct measure of the spin-lattice relaxa-tion rate for water which was measured independently. Thecorrelation times calculated from the mean relaxation ratesare summarized in Table 3.

4. Discussion

4.1. NMR titration method

Comparison of the NMR titration measurements shown inFig. 3 (data points) with predictions of the four zone multi-component molecular model of collagen hydration (solidline) calculated with parameters from Table 1 demonstratesthe capacity of fast exchange relationships to accurately de-scribe the relaxation rate of water on collagen. The model pre-dictions of sharp demarcations at h1¼ hb¼ 0.0658,

Table 1

Multi-segment or zonal fast exchange equations for spin-lattice relaxation for

water on collagen

Zone Hydration

constraint

Relaxation rate (s�1)

1 h > 24hb 1/T1¼ Roþ (24hb/h)(5/6Rimþ 1/8Rcþ 1/24Rbp� Ro)

2 24hb� h � 4hb 1/T1¼ Rimþ (4hb/h)

(3/4Rcþ 1/4Rbp� Rim)

3 4hb� h � hb 1/T1¼ Rcþ hb/h (Rbp� Rc)

4 hb� h 1/T1¼ Rprþ h/hb (Rbp� Rpr)

Ro¼ relaxation rate of bulk water; Rim¼ relaxation rate of interfacial mono-

layer water; Rc¼ relaxation rate of embedded cleft water; Rbp¼ relaxation

rate of protein with water bridges filled; and Rpr¼ relaxation rate of protein

without water bridges.

Table 2

Fitting constants for statistical fits to NMR titration studies

Fitting constant Best fit Standard

error

95% Confidence

interval

Rb (s�1) 0.347 Measured

separately

Not visible

on collagen

Rim (s�1) e summer 1 1.354 0.1979 0.9588e1.749

Rim (s�1) e summer 2 1.349 0.2102 0.9292e1.770Rc (s

�1) e summer 1 32.84 0.3142 32.21e33.47

Rc (s�1) e summer 2 33.35 0.3869 32.58e34.12

Rbp (s�1) e summer 1 16.06 0.3099 15.44e16.67

Rbp (s�1) e summer 2 14.01 0.4119 13.18e14.83

Rpr (s�1) e summer 1 4.842 0.4094 4.025e5.660

Rpr (s�1) e summer 2 7.052 0.4127 6.227e7.877

70 G.D. Fullerton et al. / Cell Biology International 30 (2006) 66e73

h2¼ hbþ hc¼ 0.264 and h3¼ hbþ hcþ him¼ 1.58 g water/g protein or at hi ¼ Ni � 0.0658 for Ni ¼ 1, 4 and 24 is con-firmed. Thus all of the hydration fractions for collagen canbe described as integer multiples of h1¼ 0.0658 as proposedby Ramachandran and shown in Fig. 4. We refer to this funda-mental quantity as the Ramachandran hydration value. It canbe calculated for any protein for which molecular weight Aand number of residues n are known using the equation

hRa ¼ 18 Da=ð3�A=nÞ

as demonstrated for lysozyme below.

4.2. Water bridges

As shown in Fig. 5 the function of the water bridge and di-rect hydrogen bond is to serve as mechanisms to reduce the

Table 3

Correlation times for water calculated from data in Table 2 using BPP theory

(Bloembergen et al., 1948)

Bulk water 1/T1¼ 0.347 s�1 t¼ 6.7� 10�12 (Reference)

Orientational water 1/T1¼ 1.352 s�1 t¼ 2.6� 10�11 (Bulk� 4)

Cleft water 1/T1¼ 33.1 s�1 t¼ 6.55� 10�10 (Bulk� 100)

electrostatic energy of the protein by transferring positivecharge from amide sites to compensate negative charge fromcarbonyl groups. Direct hydrogen bonds occur when the sepa-ration is less than 3 A while water bridges are necessary whenseparations approach 5 A sufficient to allow insertion of awater molecule. Separations are controlled by stereotacticrestriction when the protein is folded. Hydrogen exchange ex-periments (Yee et al., 1974) showed extremely long exchangetimes (hours to days) for amide hydrogen atoms participatingin either direct or water bridge bonds to confirm the two-bondmodel proposed by Ramachandran. The NMR titration meas-urements extend this conclusion by confirming as proposedthat a water bridge provides the second bond per tripeptide.

4.3. Cleft water

We define cleft water as the additional three water mole-cules per tripeptide that bind in a hydrogen bonded networkto the protein as well as to the structural water bridge (also lo-cated in the cleft) to complete the four-water molecule chainper every three peptide residues in the molecular grooves ofthe collagen triple helix proposed as by Berendsen (1962)and Fullerton and Amurao (2005). We reason on the basis ofgeometry that cleft waters participate in double water bridges

Fig. 4. The Ramachandran proposal of one direct hydrogen bond per tripeptide, one water bridge and a second non-charge bridge water molecule was necessary to

complete the two-bond model proposed by his group. (a) Shows configuration when peptide three is other than hydroxyproline. (b) Shows the alternative tripeptide

hydrogen bonding configuration when hydroxyproline occupies position three in Chain A. In both instances hRa¼ 18 Da/(3�mean peptide molecular

weight)¼ 0.0658 g/g for collagen. Reproduced with permission (Ramachandran and Chandrasekharan, 1968).

71G.D. Fullerton et al. / Cell Biology International 30 (2006) 66e73

Fig. 5. Molecular water serves as a dielectric and thereby reduces the in vacuo electrostatic energy of the collagen molecule by aligning with the electric field

generated between positive amide and negative carbonyl charge sites on the neighboring a-protein chains. Water bridges are highly immobilized such that the

relaxation rates of protein with water bridge Rbp approach that of the solid protein Rpr without water as shown in Table 2.

between the remaining main chain amide group and neighbor-ing carbonyl groups; recall one of the three amides participatesin a direct bond (Rich and Crick, 1955), a second in a singlewater bridge (Ramachandran and Chandrasekharan, 1968)and only one remains. As discussed by Westerhof (1993) a sin-gle water binds to the positive amide but branches into doublewater bridges to bind with three water molecules to two neg-ative carbonyl groups when separations are too great for singlewater bridges. Thus direct bonds (shortest separation), struc-tural waters (intermediate separation) and cleft water (greatestseparation) use four waters to fill all the available hydrogenbonding sites on the collagen protein main chain. All remain-ing water bridges originate from less confined side chains suchas the positive hydroxyl group on hydroxyproline.

As shown in Table 2 the Rc relaxation rates for cleft wateron samples 1 and 2 are not significantly different. The corre-lation time calculated for the mean relaxation rate given inTable 3 shows that cleft water tumbles at a rate 100 times slowerthan bulk water. Slowed tumbling is attributed to two factors:(1) the water molecule are participating in double waterbridges between sites separated by distances w6.5 A and (2)the waters are mechanically compressed between proteinsurfaces (Jeffrey and Saenger, 1991; Westerhof, 1993). The in-tramolecular double water bridges form cleft water. Cleft wa-ter is the most rapidly relaxing water fraction and therebyserves as the relaxation sink for the entire water/protein systemthrough the mechanism of fast proton exchange. The motion ofwater in cleft water is sufficiently slowed that water tumblingresonates with the proton resonant frequency. As protons ex-change positions rapidly and relaxation in the cleft fractionis so rapid, most protons undergo spin-lattice relaxation whilein the cleft compartment. Thus the double water bridge cleftwater is the relaxation sink for the entire water/protein protonensemble. Cleft water hydration hc is three times the Rama-chandran hydration but the peak in the observed spin-latticerelaxation occurs at h2¼ hbþ hc¼ 0.264 g water/g protein.This for the first time identifies the source of short T1 relaxa-tion in tissue.

4.4. Interfacial monolayer water

As seen in Fig. 3 and Tables 2 and 3 the relaxation times ofthe outer most water compartment on the two native tendonsamples measured in Zone 2 do not differ significantly. How-ever, the mean Rim¼ 1.352 s�1 differs significantly fromRo¼ 0.347 s�1 measured separately for bulk water at thesame temperature. Hydration force measurements (Leikinet al., 1994) show that large mechanical or osmotic pressuresare necessary to provide the work to remove interfacial waterin the hydration range h ¼ 0.26e1.1 g water/g collagen. In a re-lated paper in this issue we show that water in this hydrationrange is contained in the first water monolayer on collagen(Fullerton and Amurao, 2005). Monolayer coverage on neigh-boring molecule provides double layer separation of approxi-mately 6.3 A between neighboring collagen surfaces. Theseparation accommodates a rapidly shifting hydrogen bondnetwork (Bella et al., 1994, 1995) consisting of intermoleculardouble and triple water bridges from positive charge sites onthe peptide side chains to nearby negative charge sites. We re-fer this water as interfacial monolayer water and exclude fromit the more confined cleft and structural water fractions that arestrictly intramolecular and associated with the protein mainchain. Thus hydration force, NMR titration and molecularstructure calculations all agree with the assertion that interfa-cial monolayer water is in a lower free energy state than bulkwater and there is little if any bulk water present on nativemammalian tendon.

The maximum extent of interfacial monolayer water is dif-ficult to determine accurately from the measurements in Fig. 3.Prior experiments on other protein solutions (Hallenga andKoenig, 1976) show that under dilute conditions of Zone 1the straight line extrapolates to the relaxation rate measuredfor bulk water or Ro¼ 0.347 s�1 on our instrument. The factthat the data in Zone 2 extrapolate to a number significantlydifferent therefore implies that there is a break in the linesomewhere between the lowest value of Mp/Mw and zerowhich is consistent with the dotted line at h ¼ 1.58 predicted

72 G.D. Fullerton et al. / Cell Biology International 30 (2006) 66e73

by the model. Experiments using tendon expansion measure-ments and relation to molecular collagen separation modelsalso reported in this volume indicate that monolayer hydrationh ¼ 1.62� 0.16 SD g/g (Fullerton and Amurao, 2005).

4.5. Protein relaxation

The protein relaxation rates for S1 and S2 are significantlydifferent even though the relaxations of the water fractions areto all purposes identical. This difference will require furtherinvestigation but is likely due to difference in collagen cross-linking due to life-time stress and other animal specific biomo-lecular factors.

4.6. Application of NMR titration to lysozyme

The NMR titration method was developed originally asa phenomenological method without theoretical basis in an at-tempt to understand and predict MR image contrast. Lysozymewas studied as model globular protein system (Fullerton et al.,1986). The re-evaluation of the published results allows testingof the molecular hydration model. The molecular weight of ly-sozyme is A ¼ 13 270 and there are n ¼ 129 peptide residues.Thus the mean residue molecular weight is 102.9 Da/residue.This is slightly higher than collagen due primarily to thehigh concentration of glycine in collagen. The Ramachandranhydration constant is calculated for lysozyme hRa¼ 18/(3� 102.9)¼ 0.0583 g/g. This model prediction compareswell with the NMR titration measurement of 0.055 g/g andagrees well with more than 10 other measurements of structuralwater by isopiestic, infrared, heat capacity and a variety ofcalculation methods quoted in the paper (see Table IV inFullerton et al., 1986). The molecular model predicts thatthe peak in the lysozyme titration study should occur ath2¼ 4� hRa¼ 0.233 g water/g protein. The model value com-pares well with the peak values measured by titration whichranged from 0.22 to 0.27 with mean 0.253 g water/g protein.This amount of bridge and cleft water agrees with more than15 papers giving measures of what was previously called‘‘bound’’ water using (1) nonfreezing fraction, (2) dielectricmeasures, (3) sedimentation, (4) compositional calculation,(5) isotherm measurements, (6) isopiestic measurements, (7)BET isotherm, (8) X-ray diffraction as well as (9) NMR titra-tion (see Table V in Fullerton et al., 1986). This implies thatcleft hydration hi ¼ 0.175 g/g is predicted by the collagenbased set of protein molecular hydration rules. Finally the ex-tent of interfacial monolayer water on lysozyme extends to atleast him¼ 1.4 g water/g protein and possibly more. All implylarge amount of water on internal surfaces of the protein ratherthan multilayer of structured water originally hypothesized toexplain results.

5. Conclusions

The NMR titration method provides measurements to di-rectly relate water NMR relaxation to an underlying molecularmodel of collagen hydration. Although the description of

hydration fractions as integer multiples of the Ramachandranhydration fraction may be merely fortuitous, the regularityof protein’s primary and secondary structure provides a geo-metric foundation consistent with such a stoichiometric hydra-tion relationship. In addition the hydration model encompassesa wide range of difficult to explain empirical observations ofprotein hydration effects that have eluded coherent molecularexplanation for many years.

The NMR spin-lattice relaxation ‘‘sink’’ for collagen isidentified as three water molecules per every three peptideforming double water bridges between a single positive amidegroup and two carbonyl groups on the protein main chain.Comparison with results on lysozyme implies similar intimateassociation of three water molecules with the main chain ofglobular proteins in both a-helix and b-pleat configurations.Such a regular stoichiometric association of internal waterwith native, folded proteins is, however, contrary to the major-ity view of the scientific community and should be viewedwith caution.

The NMR titration method thus allows experimental confir-mation of hydration model calculations and predictions of hy-dration properties for lysozyme and possibly other proteinsdirectly from molecular composition. Collagen hydration rulesappear more universal than originally anticipated. The agree-ment of predicted hydration fractions for collagen and otherproteins suggests water chains associated with proteins chainsin the a-helix and b-pleat configurations. This was not previ-ously known. Preliminary NMR titration studies of multipleproteins rich in both a-helix and b-pleat in our laboratoriesuniversally follow the ‘‘Ramachandran’’ hydration rules devel-oped for collagen. We tentatively propose that globular pro-teins obey the collagen stoichiometric hydration rules of thecollagen triple helix. The topic needs further investigation.

Acknowledgements

Funding for much of this work came from discretionalfunds supplied by Malcolm Jones Distinguished Professorshipfor which I am grateful to Drs. Reuter, Dodd and my other col-leagues from the Radiology Department in San Antonio.

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