Disruption of Neuronal Migration by RNAi of Dyx1c1 Results in Neocortical and Hippocampal...
Transcript of Disruption of Neuronal Migration by RNAi of Dyx1c1 Results in Neocortical and Hippocampal...
Disruption of Neuronal Migration by RNAiof Dyx1c1 Results in Neocortical andHippocampal Malformations
Glenn D. Rosen1,2, Jilin Bai3, Yu Wang3, Christopher G.
Fiondella3, Steven W. Threlkeld4, Joseph J. LoTurco3 and Albert
M. Galaburda1,2
1Dyslexia Research Laboratory and Charles A. Dana Research
Institute, Department of Neurology, Division of Behavioral
Neurology, Beth Israel Deaconess Medical Center, Boston, MA
02215, USA, 2Harvard Medical School, Boston, MA 02115, USA,3Deparmentof PhysiologyandNeurobiology and 4Departmentof
Psychology, University of Connecticut, Storrs, CT 06268, USA
The brains of individuals with developmental dyslexia have neo-cortical neuronal migration abnormalities including molecular layerheterotopias, laminar dysplasias, and periventricular nodular het-erotopias (PNH). RNA interference (RNAi) of Dyx1c1, a candidatedyslexia susceptibility gene, disrupts neuronal migration in de-veloping embryonic neocortex. Using in utero electroporation, wecotransfected cells in the rat neocortical ventricular zone (VZ) atE14/15 with short hairpin RNA vectors targeting Dyx1c1 along witheither plasmids encoding enhanced green fluorescent protein orplasmids encoding monomeric red fluorescent protein only. RNAi ofDyx1c1 resulted in pockets of unmigrated neurons resembling PNH.The pattern of migration of transfected neurons was bimodal, withapproximately 20% of the neurons migrating a short distance fromthe VZ and another 40% that migrated past their expected lamina.Approximately 25% of the transfected brains had hippocampalpyramidal cell migration anomalies. Molecular layer ectopias,which were not related to injection site artifacts, were also seenin 25% of the animals. These results support the hypothesis thattargeted disruption of the candidate dyslexia susceptibility gene,Dyx1c1, results in neuronal migration disorders similar to thoseseen in the brains of dyslexics.
Keywords: dyslexia, Dyx1c1, molecular layer ectopias, neuronal migration,periventricular nodular heterotopias, RNAi
Introduction
Developmental dyslexia is a language-based learning disability
affecting 4--10% of the population, which is characterized by
a difficulty with learning to read despite adequate motivation,
intelligence, and educational opportunity. The complex nature
of this disorder is reflected in the wide-ranging differences
reported between the brains of dyslexics and nondyslexics,
including symmetry of language-related regions (Galaburda
et al. 1985; Shapleske et al. 1999), reduced gray matter volume
(Silani et al. 2005; Vinckenbosch et al. 2005), and altered
patterns of white matter organization (Klingberg et al. 2000;
Schwartzman et al. 2005). We have reported small neocortical
malformations in the brains of dyslexics (Galaburda and Kemper
1979; Galaburda et al. 1985; Humphreys et al. 1990). These
neuronal migration anomalies, consisting of nests of neurons
and glia in the molecular layer (ectopias), intracortical laminar
dysplasias, and occasional instances of focal microgyria, are
located primarily in the lateral surface of the left hemisphere,
including the perisylvian, temporo-occipital, temporoparietal,
and frontal regions. Similarly, recent reports have demonstrated
an increased incidence of developmental dyslexia in patients
with periventricular nodular heterotopias (PNH) (Chang et al.
2005; Sokol et al. 2006).
The known genetic etiology of dyslexia similarly reflects the
complexity of this disorder. Thus, linkage analysis points to
dyslexic susceptibility loci on chromosomes 1, 2, 3, 6, 7, 11, 15,
18, and X (see Fisher and Francks 2006). Recently, candidate
dyslexia susceptibility genes have been proposed at some of
these intervals. ROBO1, an axon guidance and neuronal
migration gene located on Chr 3, has been reported to be
a candidate dyslexia susceptibility gene (Hannula-Jouppi et al.
2005), and 2 genes,DCDC2 and KIAA0319, have been identified
on Chr 6 (Francks et al. 2004; Cope et al. 2005; Meng, Smith,
et al. 2005; Paracchini et al. 2006; Schumacher et al. 2006).
DYX1C1 (also known as EKN1), a candidate dyslexia suscepti-
bility gene located on Chr 15, has been proposed, although
there is controversy regarding its generalizability outside of
Finnish populations (Taipale et al. 2003; Chapman et al. 2004;
Scerri et al. 2004; Wigg et al. 2004; Bellini et al. 2005; Marino
et al. 2005).
These genetic results have informed research on the ana-
tomic substrates of developmental dyslexia. We have demon-
strated thatDCDC2, KIAA0319, andDYX1C1 are genes involved
in neuronal migration (Meng, Smith, et al. 2005; Paracchini et al.
2006; Wang et al. 2006). Specifically, we used in utero electro-
poration to transfect premigratory neurons in the ventricular
zone (VZ) with short hairpin RNA (shRNA) targeted against
each of these candidate dyslexia susceptibility genes. Examina-
tion of the brains 4 days post transfection revealed in each case
that transfected neurons were arrested in migration. What is not
yet known is the adult neocortical phenotype of animals trans-
fected with these shRNAs, which would be of interest for com-
parison with the adult dyslexic brain. Here we report the results
of a study in which we examined the brains of adult rats that had
in utero electroporation of shRNA targeted against Dyx1c1. We
hypothesized that the neuronal migration abnormalities in-
duced by this treatment would result in neocortical malforma-
tions similar to those seen in postmortem dyslexic brains.
Materials and Methods
In Utero ElectroporationIn utero electroporation was performed at the University of Connect-
icut, and all procedures were approved by the Institutional Animal Care
and Use Committee of that institution. In all Dyx1c1 shRNA treatments,
plasmids encoding shRNA (pU6DyxHPB) and plasmids encoding en-
hanced green fluorescent protein (eGFP) (pCAGGS-eGFP) were co-
transfected into the VZ. The remaining animals received transfection
only with plasmids encoding monomeric red fluorescent protein
(mRFP) (pCAGGS-RFP). Ten Wistar dams (Charles River Laboratory,
Wilmington, MA) were anesthetized at E14/15, the uterine horns were
exposed, and approximately half of the pups were randomly assigned to
receive Dyx1c1 shRNA plasmids (1.5 lg/lL) plus eGFP (0.5 lg/lL),whereas the remaining pups were injected with mRFP (0.4 lg/lL).
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The plasmids were microinjected by pressure (General Valve picos-
pritzer) through the uterine wall into one randomly chosen lateral
ventricle of each embryo, using a pulled glass capillary (Drummond
Scientific, Broomall, PA). Equal numbers of mRFP and Dyx1c1 shRNA +eGFP injections were made. Electroporation was achieved by discharge
of a 500 lF 250 V capacitor charged to 50--100 V (Bai et al. 2003). A pair
of copper alloy plates (1 3 0.5 cm) pinching the head of each embryo
through the uterus were the conduit for the voltage pulse. For each
embryo, plasmids were injected in one hemisphere, and diffusion of the
plasmids into the opposite hemisphere was encouraged by gently
tapping the embryo skull until dye was seen to migrate into the
opposite hemisphere. A voltage pulse was discharged across the embryo
skull with the positive electrode adjacent to the transfected hemi-
sphere, the electrodes were repositioned to the opposite hemisphere,
and a second pulse was delivered. This resulted in the transfection of
cortex in both hemispheres. Five embryos were harvested 2 days post
transfection for comparison of the size of the initial transfection in both
the mRFP and Dyx1c1 shRNA + eGFP conditions. Thirty-six males were
weaned on P21 and were housed into pairs. Animals were reared under
a 12:12 light/dark cycle with food and water available ad lib and were
behaviorally tested (Threlkeld et al. forthcoming). In order to assess the
efficiency of cotransfection (i.e., what proportion of cells are cotrans-
fected when unequal molar ratios similar to those used in the Dyx1c1
shRNA + eGFP condition), 4 animals were cotransfected with eGFP (3.2
lg/lL) and mRFP (0.5 lg/lL). As shown in the results (and similar to
previous reports, e.g., Bai et al. 2003), essentially all cells are cotrans-
fected with both plasmids even when one plasmid is used at a much
lower concentration.
Histology
Adults
At P90--100, animals were deeply anesthetized (Xylanzine/Ketamine
100 mg/mL) and sacrificed by transcardial perfusion with 0.9% saline
followed by 4% paraformaldehyde. The brains were removed from the
skull and visualized whole under fluorescence for the presence of eGFP
(N = 21) or mRFP (N = 15). Twelve brains (6 Dyx1c1 shRNA + eGFP and
6 mRFP) were coronally sectioned at 40 lm on a freezing microtome
after cryoprotection in 30% sucrose buffer. The remaining 24 brains (15
Dyx1c1 shRNA + eGFP and 9 mRFP) were dehydrated in graded ethanol
and embedded in 12% celloidin before being sectioned in the coronal
plane at 30 lm. One series of every 10th section was stained for Nissl
substance (Thionin for the frozen sections, cresyl violet for the
celloidin). An adjacent series of free-floating sections was processed
for immunohistochemical detection of either eGFP (Chemicon, 1:200)
or mRFP (Chemicon, Temecula, CA, 1:1000) using ABC protocols. The
celloidin was first removed from the celloidin-embedded tissue by
incubation in a 1:1 solution of ethyl ether and 100% ethanol for 30 min.
Embryonic
For assessment of the number of cells initially transfected in the Dyx1c1
shRNA + eGFP and mRFP conditions, embryos were harvested 2 days
after transfection, a time when previous experiments have indicated
that proliferation in the transfected population has ceased (Wang et al.
2006). For the investigation of cotransfection efficiency at molar ratios
similar to those used in the current experiment, embryos were
harvested 4 days post transfection. Pregnant dams were anesthetized
as above and embryos harvested. Brains were quickly removed, fixed by
4% paraformaldyhyde, and stored in sodium phosphate buffer. They
were sectioned on a vibratome (Leica VT1000S, Leica Microsystems Inc.,
Bannockburn, IL) at 80 lm, and the sections mounted on glass slides and
coverslipped.
In Situ HybridizationIn order to better interpret the knockdown findings, we determined the
expression of Dyx1c1 in the prenatal brain by in situ hybridization
during various stages of embryonic development. We obtained time-
mated pregnant females (Charles River) and sacrificed the litters on E13,
E15, E17, or E19. Embryos from these litters were immediately frozen,
their brains were cut in the sagittal or coronal plane on a cryostat at 18
lm thickness, and the slides were processed for in situ hybridization of
Dyx1c1 as described below.
The cDNA prepared from frontal, parietal, and occipital lobes of
human embryonic brain (20 weeks, Biochain Institute, Hayward, CA)
was amplified with respective forward and reverse primers (GGG AGA
AAT TCA GAA AAT ATA TTT AC and TTA AGA TTT TAG TTC TGT TCC
TTG AATT) for 35 cycles. All fragments were then cloned into t vector
(Invitrogen, Carlsbad, CA) and sequenced to verify Dyx1c1 amplifica-
tion. Rat embryonic and postnatal brain cDNAs were synthesized from
total RNA and amplified with the primers ATG CCG GTG CGA GTG AGC
GAG and CAT CAT CTC GCC TAG GGC GTA TC to rat Dyx1c1. The
amplified DNA was gel-purified, cloned, and sequence verified to be
Dyx1c1. Nonradioactive in situ hybridizations were done by UB-In Situ
(Natick, MA), as previously described (Berger and Hediger 2001), using
a digoxigenin-labeled cRNA probe. The antisense and sense probes were
obtained from the polymerase chain reaction (PCR) products, amplified
from rat E14 brain cDNA, and cloned in pGEMT-Easy flanking T7 and SP6
promoters. Two probes, one from the first 400 bp generated from PCR
primer pairs and the second full-length cDNA yielded similar results.
Analysis
Adult
All analyses of adult brains were performed blind with respect to con-
dition. Nissl-stained sections were surveyed for the presence of malfor-
mations and the location noted. The location of immunohistochemically
labeled cells was charted in an adjacent series from 5 Dyx1c1 shRNA +eGFP and 4 mRFP brains using Neurolucida (MBF Biosciences, Williston,
VT), and the average number of labeled cells per section was computed.
The distance of labeled cell migration from the white matter to the pial
surface was assessed on 4 Dyx1c1 + eGFP and 4 mRFP brains. Section
drawings by Neurolucida were imported into Canvas X (ACD Systems,
Miami, FL), and a counting rectangle subdivided into 10 equal-size bins
was sized to extend from the white matter to the pial surface. The width
of the counting box was held constant at approximately 500 lm. The
number of labeled cells within each decile was manually counted and
recorded. For eachbrain,wemeasuredone rectangle in eachhemisphere
from 8 sections. A total of 2929 cells were counted in animals co-
transfected with Dyx1c1 shRNA + eGFP and 5678 in those transfected
with mRFP alone. The percentage of labeled cells in each decile was
determined for each animal, and themean value across all animals within
each condition was determined. Differences in frequency distribution
between the 2 conditions were assessed using chi-square analysis.
Embryonic
In order to determine the size of the initial transfection in transfected
(mRFP) and cotransfected (Dyxt1c1 shRNA + eGFP) conditions, images
of embryonic brains harvested 2 days post transfection were obtained by
confocal microscopy (Leica TCS SP2, Leica Microsystems) with a 403
objective. Image J (http://rsb.info.nih.gov/ij/) was used to count the
number of labeled neurons in each of 3 sections in each brain
automatically. Three brains were assessed in the mRFP condition and
2 brains in the Dyx1c1 shRNA + eGFP condition.
To determine the efficiency of cotransfection at molar ratios similar to
those used in shRNA transfections, we examined 4 brains that were
harvested 4 days following transfection of eGFP and mRFP plasmids at
approximately 6:1 molar ratio. Confocal microscopy and sequential
scanning for the 2 flours was used to assess single labeling and double
labeling (indicating cotransfection with both plasmids).
Image ProcessingPhotomicrographs were adjusted for exposure and sharpened (unsharp
mask filter) using Adobe Photoshop (Adobe Inc., San Jose, CA). Some
images were acquired using the Virtual Slice Module of Neurolucida.
Image montages were created in Canvas X (ACD Systems).
Results
Dyx1c1 Is Ubiquitously Expressed at a Modest Level inthe Forebrain
In situ hybridization of Dyx1c1 in embryonic rat embryos
revealed that this gene is expressed relatively ubiquitously in
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the forebrain during forebrain development (Fig. 1A). The level
of expression is relatively modest, with higher concentrations in
the neocortex, hippocampus, and choroid plexus. There is no
literature regarding Dyx1c1 expression in rat brain, but
examination of in situ hybridizations of adult mouse brains
at the Allen Brain Atlas (http://www.brainatlas.org/aba/) also
demonstrated a relatively modest level of ubiquitous expression
of Dyx1c1 in the forebrain, with higher levels in the neocortex,
hippocampus, and choroid plexus. We also queried The
GeneNetwork (http://genenetwork.org/search.html), an on-
line, publicly accessible database of transcript expression
(from Affymetrix 430 v2 microarrays) from dissected hippo-
campus, cerebellum, eye, striatum, and forebrain for a variety of
mouse strains, to assess Dyx1c1 transcript expression in adult-
hood. These data confirmed relatively modest expression of the
transcript in all 5 regions assayed (Fig. 1B).
Cotransfection Is Highly Efficient
Examination of embryos cotransfected with eGFP and mRFP at
an approximately 6:1 molar ratio 4 days post transfection
revealed that nearly all transfected neurons were transfected
with both plasmids (Fig. 2). Examination of thousands of
neurons in all 4 animals revealed only an occasional neuron
that was transfected with only one of the plasmids. This
indicates a near perfect efficiency of cotransfection using molar
ratios even greater than those employed in the Dyx1c1 shRNA +eGFP condition (approximately 5:1). This supports the conten-
tion that nearly every eGFP-labeled neuron in this condition was
also transfected with Dyx1c1 shRNA.
There Are Fewer Dyx1c1 RNA interference--TransfectedNeurons in the Neocortex
We counted the number of transfected neurons 2 days post
transfection in 3 mRFP and 2Dyx1c1 shRNA + eGFP animals and
found similar numbers of labeled neurons in these conditions
( �X±SEM=492±13:5 vs: 478±1:0; respectively; F1,4 < 1, not sig-
nificant; Fig. 3A). These results support the contention that the
initial number of transfected neurons did not differ between the
2 conditions. Examination of the adult brains, however, revealed
fewer labeled cells in Dyx1c1 shRNA + eGFP--transfected
animals as compared with those transfected with mRFP alone
(see Fig. 3B,C,D). This was confirmed quantitatively: the average
number of labeled cells in each section was significantly higher
in the mRFP than in the Dyx1c1 shRNA + eGFP condition
( �X±SEM=954:6±118:0 vs: 347:0±90:7; respectively; t = 4.2, de-
grees of freedom [df] = 7, P < 0.01). Taken together, these
results suggest a loss of neurons in Dyx1c1 shRNA + eGFP--
transfected animals in adulthood.
There Are Pockets of Unmigrated Cells in the WhiteMatter
There were periventricular clusters of unmigrated cells in all
Dyx1c1 shRNA + eGFP (see Fig. 4) but in none of the mRFP
animals. These PNH were located directly either at the
ependymal layer deep to the white matter, within the white
matter itself, or at the cortical white matter border and were
easily visible in Nissl-stained sections. Examination of these cells
in immunohistochemically stained sections revealed that only
a subset was immunopositive for eGFP. This suggested that
these neurons did not migrate because of a secondary rather
than a direct effect of Dyx1c1 RNA interference (RNAi) trans-
fection. The morphology of the unmigrated immunopositive
cells was clearly neuronal, although their normal radial orien-
tation was disturbed (Fig. 4D,D9).
Laminar Displacement of shRNA-Transfected Neurons
In all the cases examined, mRFP+ neurons migrated to supra-
granular locations, predominantly to neocortical layer 3. Rela-
tively few mRFP-labeled neurons were located in infragranular
layers. In contrast, eGFP+ neurons in the Dyx1c1 shRNA
condition were commonly found in infragranular layers, and
those that migrated supragranularly were found superficial to
the layer 3 location seen in mRFP-transfected animals (see Fig.
5A,B). This was confirmed quantitatively by migration distance
analysis (Fig. 5C). The distribution of labeled cells through
the thickness of the neocortex in Dyx1c1 shRNA + eGFP--
transfected animals differed significantly from that of neurons
transfected with mRFP (v2 = 3920.0, df = 9, P < 0.0001). Thus,
Figure 1. Expression of Dyx1c1 in the developing and adult rodent brain. (A) In situhybridization of Dyx1c1 of E15 and E17 rat embryos. Dyx1c1 gene expression ismodest and relatively ubiquitous in the forebrain. Bar 5 1 mm. (B) Dyx1c1 transcriptexpression levels in the 5 brain regions in the adult mouse as assessed by Affymetrix430 v2 microarray. Expression data are transformed to a log 2 scale and normalizedsuch that the mean ± standard error of mean (SEM) for all transcripts is 8 ± 2. Dataare expressed as the mean ± SEM from at least 30 mouse strains contained in TheGeneNetwork (http://genenetwork.org/).
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whereas the distribution in mRFP animals was Gaussian, with
a peak at 70--80% of the distance to the pial surface, in the
Dyx1c1 shRNA + eGFP cases, it was essentially bimodal, with
peaks at the white matter border and at a location closer to the
pial surface. A chi-square analysis of just the neurons in the
upper 50% of the cortex was also significant (v2 = 2554.9, df = 4,
P < 0.0001), indicating that the neurons in the Dyx1c1 shRNA +eGFP condition migrated to more superficial locations than
neurons transfected with mRFP only.
Malformations of the Hippocampus
Of the 21 animals cotransfected with eGFP and Dyx1c1 shRNA,
5 had malformations of the hippocampus, one of which was
bilateral. There were no hippocampal malformations seen in any
of the brains of animals transfected with mRFP only. The
hippocampal malformations consisted predominantly of dis-
placed cells from the pyramidal layer into the stratum radia-
tum and stratum oriens (see Fig. 6A,B,D,E). There were also
ectopic collections of cells in the stratum radiatum that
appeared to be pyramidal in morphology. Interestingly, the
morphology of the eGFP+ cells was more typical of neocorti-
cal pyramidal cells than of hippocampal pyramidal cells (Fig.
6C,F,G). Specifically, these neurons had extended apical den-
drites and less elaborate dendritic arborization than typically
seen in hippocampal pyramidal cells. Examination of immuno-
histochemically stained sections revealed that only a small
percentage of the displaced neurons were eGFP+. Thus, some
of the displaced neurons were not transfected with shRNA
targeted against Dyx1c1, thereby suggesting a secondary effect
of the shRNA transfection in the hippocampus.
Molecular Layer Ectopias in the Cerebral Cortex
Collections of ectopic neurons in the molecular layer were seen
in both mRFP (13/15) and Dyx1c1 shRNA + eGFP (13/21)
animals. These ectopic neurons were often accompanied by
laminar dysplasias in the subjacent cortex, which appear to be
related to the disturbances associated with the injection of
plasmids into the ventricle at E14 (Rosen et al. 1992, 1995). This
is confirmed by examination of immunohistochemically stained
sections where the physical displacement of labeled cells can be
seen (see Fig. 7).
Five of the 21 brains cotransfected with eGFP and Dyx1c1
shRNA, and none of the mRFP-transfected cases, had 2 separate
collections of ectopic neurons in layer I of the cortex: one
Figure 2. Cotransfection at high molar ratios is highly efficient. Embryos were cotransfected with eGFP and mRFP at an approximately 6:1 molar ratio and harvested 4 days later.(A--C) Photomicrographs illustrating eGFP (A) and mRFP (B) transfected neurons from the VZ to the pial surface. Nearly every transfected neuron is colabeled with eGFP and mRFP,as can be seen in the overlaid image (C). Bar for (A--C)5 100 lm. (D--F) High-power photomicrographs illustrating transfected neurons labeled with eGFP (D), mRFP (E), and bothfluorescent proteins (F). Here every transfected neuron is double labeled. Bar 5 10 lm.
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Figure 3. Disposition of labeled neurons in the brains of animals transfected in utero with Dyx1c1 shRNA þ eGFP or mRFP alone. (A) When examined 2 days post transfection,there is no apparent difference in the number of transfected neurons between the 2 groups. Bar 5 20 lm. (B) The number of Dyx1c1 shRNA þ eGFP neurons expressed asa percentage of mRFP neurons in short survival (2 days following transfection) and adult (P90--100) rats. Whereas there is no difference 2 days post transfection, there isa significant decrease in labeled neurons in the Dyx1c1 shRNAþ eGFP condition in adulthood. (C, D) In adulthood, there are fewer labeled neurons in the Dyx1c1 shRNA þ eGFPcondition, and they are scattered throughout the neocortical laminae when compared with the laminarly delimited location of labeled neurons in the mRFP condition.
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collection resembled the disturbance at the injection site
described above, whereas the other showed a different mor-
phology. In each case where a second collection of ectopic
neurons was found, it was in an area distant from the site of
injection. In addition, these malformations were distinguishable
from the injection-related malformations by the general lack in
the latter of disturbed cortex in the subjacent layers (see Fig.
8A,B,C). The second type of molecular layer ectopias was
remarkably similar in appearance to ectopias seen in human
dyslexic brains (Fig. 8D). Examination of the immunohisto-
chemically stained sections in this second set of ectopias
revealed that, in contrast to injection site ectopias, there was
no displacement of labeled neurons into more superficial lamina
in the area of the malformation. Moreover, transfected neurons
surrounded the ectopia, but there were few, if any, labeled
neurons within the cluster of cells (see Fig. 8E). This suggested
once again that at least some component of the malformations
caused by Dyx1c1 shRNA might arise from changes in cell
interactions rather than from direct RNAi effects on cells.
Discussion
The results of the current experiment support previous work
suggesting that RNAi of the rodent homolog of the candidate
dyslexia susceptibility gene DYX1C1 disrupts neuronal migra-
tion in developing cerebral cortex (Wang et al. 2006). Four days
following transfection, there was a nearly complete block of
migration into the cortical plate. Moreover, this block was
rescued by concurrent overexpression of Dyx1c1 indicating
that the RNAi effect is specific to knockdown of Dyx1c1
expression. When examined in adulthood, the pattern of the
disturbance in the cerebral cortex has evolved. There is an
approximately 60% reduction of transfected cells in Dyx1c1
shRNA--transfected brains as compared with those transfected
with mRFP alone. Neurons transfected with shRNA targeted
against Dyx1c1 exhibit an essentially bimodal pattern of
neuronal migration, with approximately 20% of the surviving
neurons remaining in the white matter and in layer VI and 60%
migrating to supragranular layers. Interestingly, two-thirds of
these supragranular neurons appear to have migrated to laminae
beyond those seen in animals transfected with fluorescent
protein alone at the same age. In addition to these migrational
disturbances, molecular layer ectopias not related to the
injection site are seen in approximately 25% of the Dyx1c1
shRNA--transfected animals, which appear to be similar to those
seen in the brains of postmortem dyslexics. We unexpectedly
found that targeted knockdown of Dyx1c1 also disrupts the
anatomic organization of the hippocampus.
Neuronal Migration and Developmental Dyslexia
Of the 4 candidate dyslexia susceptibility genes currently
identified, all 4 have been shown to play a role in neuronal
migration. Using in utero electroporation of shRNA targeted
against the genes DCDC2, KIAA0319, and DYX1C1, we have
demonstrated that each of these genes disrupts neuronal
migration to the neocortex (Meng, Smith, et al. 2005; Paracchini
et al. 2006; Wang et al. 2006). The fourth dyslexia candidate
gene, ROBO1 (Hannula-Jouppi et al. 2005), has also been well
characterized as being important for axon guidance and
Figure 4. Packets of unmigrated neurons in the white matter and VZ of Dyx1c1 shRNA þ eGFP subjects. (A) Photomicrograph of Nissl-stained section illustrating packets ofunmigrated cells in the white matter (white arrow and black arrowheads) and along the ventricle (black arrow). Bar 5 250 lm. (B) Section adjacent to Panel (A)immunohistochemically stained for eGFP. Arrows align with Panel (A). Bar 5 250 lm. (C) Higher power magnification of large packet of unmigrated cells. Bar 5 100 lm. (D)Section adjacent to Panel (C) immunohistochemically stained for eGFP. There are labeled neurons in the malformation, but comparison with Panel (C) indicates that there are someneurons that are unlabeled in this malformation. Bar5 100 lm. (D’) High-power magnification of white rectangle in Panel (D) illustrating the neuronal morphology of labeled cellscontained in the malformation. Bar 5 10 lm.
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neuronal migration (Nguyen Ba-Charvet et al. 1999; Zhu et al.
1999; Hivert et al. 2002). Combined roles in neuronal migration
and the establishment of neural circuits make these genes
nicely placed to be behind the abnormally functioning cortex
seen in developmental dyslexia.
In previous experiments involving in utero electroporation of
shRNA targeted against dyslexia susceptibility genes, brains
were examined within 4 days of transfection. As a result, the
effect on the eventual organization of the forebrain was not
assessed. In this experiment, we found forebrain malformations
in the brains of animals sacrificed in adulthood. Intriguingly, we
found molecular layer ectopias that are remarkably similar to
those seen in postmortem dyslexic brains (Galaburda and
Kemper 1979; Galaburda et al. 1985; Humphreys et al. 1990).
In addition, the clusters of unmigrated neurons seen in the
Dyx1c1 shRNA + eGFP condition closely resemble PNH, the
presence of which has been associated with an increased
incidence of developmental dyslexia (Chang et al. 2005; Sokol
et al. 2006). This lends support the purported link between
neuronal migration disorders and developmental dyslexia.
As a cautionary note, it must be mentioned that the Dyx1c1
locus described in the initial report in a Finnish population
(Taipale et al. 2003) was also found in a Canadian sample, but
with different alleles and haplotypes (Wigg et al. 2004). Also,
Chapman et al. (2004) found linkage to the same region of Chr
15 in a US population, but again did not directly replicate the
role of Dyx1c1. Other studies have failed to provide support for
the Dyx1c1 locus in Italian (Bellini et al. 2005; Marino et al.
2005), English (Scerri et al. 2004), and US (Meng, Hager, et al.
2005) populations. Thus, although our data support a role of
Dyx1c1 in neuronal migration, definitive support for its role as
a candidate dyslexia susceptibility gene outside the Finnish
population awaits further studies.
Dyx1c1 Disrupts Neuronal Migration
There was a significant diminution of labeled neurons in the
cortex of the Dyx1c1 shRNA + eGFP condition when compared
with the mRFP condition, with the latter having nearly 3-fold as
many labeled neurons. This could be the result of changes in the
proliferation of neurons or in subsequent cell death. Wang et al.
(2006) demonstrated that there was no change in the pro-
liferation of cells after treatment with RNAi against Dyx1c1, and
our analysis did not demonstrate any difference in size of the
initial transfection between animals cotransfected with shRNA
and eGFP and those transfected with fluorescent protein alone
(Fig. 2A,B). Because relatively equal numbers of neurons are
transfected in both conditions, the diminution of labeled cells in
the Dyx1c1 shRNA + eGFP condition in this study most likely
represents an increase in cell death in this population of
transfected cells.
The periventricular collections of unmigrated neurons were
not surprising given the results from the previous experiments,
where few neurons from Dyx1c1 shRNA + eGFP cases had
migrated away from the VZ when examined 4 days after trans-
fection. It was, however, unexpected that the unmigrated neu-
rons in this study comprised only 20% of the labeled neurons,
with the overwhelming majority of labeled neurons continuing
on to migrate into the cortical plate. But it is also clear that the
migration of the labeled cells in Dyx1c1 shRNA + eGFP animals
differs from those transfected only with mRFP. In mRFP animals,
the distribution of labeled neurons throughout the depth of
the neocortex was Gaussian, with approximately 75% of the
cells located in layer 3. In contrast, labeled cells in the Dyx1c1
shRNA+eGFPconditionweredistributed essentially in abimodal
manner, with one collection of cells remaining in the white mat-
ter and another group migrating up to neocortical layer 2.
Figure 5. Laminar disposition of labeled neurons in Dyx1c1 shRNA þ eGFP (A) andmRFP (B) subjects. The majority of mRFP transfected are situated in layer 3 of theneocortex. In contrast, labeled neurons in the Dyx1c1 shRNA þ eGFP conditions tendto either not migrate from the VZ or arrive in layer 2 of the neocortex. Bars5 250 lm.(C) Histogram of mean (±standard error of mean) average percentage of neurons ineach decile of neocortex ranging from the white matter to the pial surface. Thequantitative data confirm the observations suggesting that in mRFP cases (red bars),the majority of the labeled cells are concentrated in the mid-upper deciles. In contrast,the labeled cells in the Dyx1c1 shRNAþ eGFP condition are distributed bimodally, withsome not migrating much beyond the VZ and other neurons migrating past theexpected lamina.
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The reason for the migration of labeled cells to layer 2 of
the cerebral cortex in the Dyx1c1 shRNA + eGFP condition as
compared with layer 3 in the mRFP condition is not known. It
could be that knockdown of Dyx1c1 function serves mostly to
delay neuronal migration. Thus, transfected neurons remain in
the VZ in the immediate aftermath of the transfection. They
then begin their migration at the same time that later generated
neurons begin theirs. The position in the upper layers of the
cerebral cortex would be consistent with the possibility that
these cells have been respecified to upper layer fates similar to
the results from transplantation experiments of early generated
neurons into latter VZ environments (e.g., McConnell 1985,
1990). Alternatively, it could be that knockdown of Dyx1c1
function in these neurons fundamentally changes their ability to
migrate. In this case, neurons migrate throughout the cortical
layers and collect in layer 2 because they cannot migrate past
the external glial limiting membrane. At this point, we cannot
distinguish between these possibilities.
Malformations in the Forebrain
We have previously shown that puncture wounds to the cortical
plate lead to ectopic collections of neurons in the molecular
layer (Rosen et al. 1992, 1995). In the current experiment,
ectopic collections of neurons were seen in the majority of
cases and were related to the puncture of the cortical plate by
the injection of plasmids. In addition to these obvious traumatic
malformations, 25% of the Dyx1c1 shRNA + eGFP animals had
other ectopic collections of neurons in the molecular layer,
which are similar to those seen in humans with developmental
dyslexia (see above).
The malformations of the hippocampus were an unexpected
finding. These malformations are remarkably similar to those
seen in the progeny of mothers injected with methylazoxyme-
thanol (MAM) at E15 (Chevassus-Au-Louis et al. 1998). In the
case of these induced malformations, the neurons in the hippo-
campus exhibit neocortical-like neuronal activity and are hy-
pothesized to have migrated from the neocortex (Castro et al.
Figure 6. Hippocampal malformations associated with RNAi-targeted knockdown of Dyx1c1. (A) Displacement of cells from the pyramidal layer of CA1 into the stratum radiatum(arrow). Arrowheads denote clusters of ectopic pyramidal neurons. Bar 5 250 lm. (A’) Higher power magnification of ectopic cells in panel (A). Bar 5 100 lm. (B) Sectionadjacent to that in panel (A) immunohistochemically stained for eGFP with arrows matching for orientation. Note that only a small percentage of the ectopic neurons are eGFPþ.Bar5 250 lm. (B’) Higher power magnification of ectopic neurons in panel (B). White box is magnified area in Panel (C). (C) High-power magnification of immunopositive ectopicneuron in the hippocampus that morphologically resembles a neocortical pyramidal cell. Bar 5 100 lm. (D) Another example of hippocampal migration disturbances of thepyramidal layer. Here, pyramidal cells are displaced into both the stratum radiatum as well as the stratum oriens (arrowhead). Box is magnified area in Panel (D’). Bar 5 250 lm.(D’). Higher power magnification of malformation in panel (A) (arrow). Bar5 100 lm. (E) Section adjacent to that in panel (D) immunohistochemically stained for eGFP with arrowsmatching for orientation. Note that only a small percentage of the ectopic neurons are eGFPþ. Black box is magnified in Panel (E’), white box is magnified in Panel (G). Bar5 250lm. (E’) Higher power magnification of ectopic neurons in panel (E). Gray box is magnified in Panel (F). Bar 5 100 lm. (F) High-power magnification of immunopositive ectopichippocampal neurons exhibiting morphology similar to neocortical pyramidal cell. Bar 5 10 lm. (G) High-power magnification of neuron in the immunopositive neuron in thepyramidal layer of the hippocampus with neocortical pyramidal morphology. Bar 5 50 lm.
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2002). In our case, it could be that the in utero electroporation-
labeled neurons from the VZ destined to be hippocampal.
The paucity of labeled neurons in the hippocampus of mRFP-
transfected animals, however, argues against this interpretation.
In addition, the long apical dendrites and modest dendritic
arborization of these ectopic immunopositive neurons more
closely resemble neocortical pyramidal cells. It is more likely,
therefore, that the labeled neurons in the hippocampal malfor-
mations are neocortical neurons that have mismigrated from
the VZ.
Secondary Effects of Dyx1c1 Knockdown
There are a number of indications that there were secondary
effects of Dyx1c1 knockdown in the developing forebrain. Few
of the neurons that comprise the nontraumatic molecular layer
ectopias, the periventricular collections of unmigrated neurons,
and the hippocampal malformations were eGFP+. This result
could theoretically be due to the possibility that some eGFP-
negative cells are transfected only with Dyx1c1 shRNA but not
eGFP plasmids. This is unlikely given the high degree of
cotransfection efficiency at the molar ratios used in this
experiment. It is more likely that there are secondary effects
of the knockdown of Dyx1c1 function that act to disrupt
neuronal migration in the forebrain beyond the direct effects on
transfected cells.
It is tempting to speculate that disturbances to radial glial
cells may underlie these secondary effects. Radial glial cells
function not only as the scaffold by which neocortical neu-
rons migrate from the VZ to the cortical plate (Rakic 1988) but
also serve as neuronal precursors in the neocortex (Noctor
et al. 2002; Fishell and Kriegstein 2003). In addition, radial
glial cells are involved in the maintenance of the early external
glial limiting membrane (Marin-Padilla 1995). We have pre-
viously shown that disruptions of the external glial limiting
membrane can cause molecular layer ectopias to occur (Rosen
et al. 1992; Sherman et al. 1992). Prenatal exposure to MAM
not only induces hippocampal malformations but also results
in periventricular nodules and other neocortical heterotopias
(Zhang et al. 1995). MAM exposure directly affects the radial
glia by disrupting their attachment to the cortical surface
(Zhang et al. 1995) and hastening their transition to astro-
cytes (Noctor et al. 1999; Gierdalski and Juliano 2003), and it
has been hypothesized that this disruption of the radial glial
cells is the main cause of the malformations in MAM-exposed
animals (Paredes et al. 2006). Thus, disturbances of radial glial
cells during the period of neuronal migration have been
associated with all 3 types of malformations exhibited by our
model. It is therefore tempting to hypothesize that Dyx1c1
acts not only to disrupt the machinery important for neu-
ronal migration in neurons (Wang et al. 2006) but also may,
perhaps indirectly through the injury to the migrating neurons,
disrupt the radial glia. Future research will directly test this
hypothesis.
Notes
This work was supported, in part, by National Institutes of Health grant
HD20806. The authors wish to acknowledge the expert technical
assistance of Shira Anconina, Cullen Owens, and Zachary Snow.
Conflict of Interest: None declared.
Address Correspondence to Glenn D. Rosen, Department of Neurol-
ogy, Beth Israel Deaconess Medical Center, 330 Brookline Avenue,
Boston, MA 02215, USA, Email: [email protected].
Figure 7. Ectopic collections of neurons associated with injection site. (A) Low-power photomicrograph of Nissl-stained section illustrating ectopic collections of neurons in themolecular layer of the neocortex (arrowheads). As is typical of malformations associated with injection sites, there is also a cell-free region below the ectopic collection (arrow).Compare with undisturbed cortex in panel (C). (B) Section adjacent to panel (A) immunohistochemically stained for eGFP. The deviation of the band of labeled neurons is typical of aninjection site malformation. Compare with control section in panel (D). Bar 5 250 lm.
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