Zebrafish pitx3 is necessary for normal lens and retinal development
Transcript of Zebrafish pitx3 is necessary for normal lens and retinal development
Zebrafish pitx3 is necessary for normal lens and retinal development
Xiaohai Shia,1, D.V. Bosenkob,1, N.S. Zinkevichb, S. Foleya, D.R. Hydea,E.V. Seminab,*, Thomas S. Vihtelica,*
aDepartment of Biological Sciences, Center for Zebrafish Research, Galvin Life Sciences Center, University of Notre Dame, Notre Dame, IN 46556, USAbDepartment of Pediatrics, Medical College of Wisconsin, Milwaukee, WI 53226, USA
Received 2 June 2004; received in revised form 11 November 2004; accepted 19 November 2004
Available online 10 December 2004
Abstract
The human PITX3 gene encodes a bicoid-like homeodomain transcription factor associated with a variety of congenital ocular conditions,
including anterior segment dysgenesis, Peter’s anomaly, and cataracts. We identified a zebrafish pitx3 gene encoding a protein (Pitx3) that
possesses 63% amino acid identity with human PITX3. The zebrafish pitx3 gene encompasses approximately 16.5 kb on chromosome 13 and
consists of four exons, which is similar to the genomic organization of other pitx genes. Expression of the zebrafish pitx3 gene was studied by
in situ mRNA hybridization and RT-PCR. The pitx3 transcripts were detected throughout development with the greatest level of expression
occurring in the developing lens and brain at 24 hpf. In adults, the highest expression was detected in the eye. Morpholinos were used to
knockdown expression of the Pitx3 protein and a control morpholino that contains five mismatched bases was used to confirm the specificity
of the phenotypes. The morphants had small eyes, misshapen heads and reduced jaws and fins relative to controls. The morphants exhibited
abnormalities in lens development and their retinas contained pyknotic nuclei accompanied by a reduction in the number of cells in different
neuronal classes. This suggests the lens is required for retinal development or Pitx3 has an unexpected role in retinal cell differentiation or
survival. These results demonstrate zebrafish pitx3 represents a true ortholog of the human PITX3 gene and the general function of the Pitx3
protein in lens development is conserved between mammals and the teleost fish.
q 2004 Elsevier Ireland Ltd. All rights reserved.
Keywords: Pitx3; Lens; Retina; Zebrafish; Morpholino
1. Introduction
The generation of a functional vertebrate eye requires
coordinating the movement and differentiation of different
cell and tissue types throughout development (Chow and
Lang, 2001). The tissue interactions are also necessary for
maintaining some of the differentiated cell types in the eye
(Yamamoto et al., 2003; Yamamoto and Jeffery, 2000).
Historically, the ocular lens has served as a model to
identify factors required for embryological tissue induction
(Grainger, 1992; Henry and Grainger, 1990; Hirsch and
Grainger, 2000; Zygar et al., 1998). More recently, genetic
0925-4773/$ - see front matter q 2004 Elsevier Ireland Ltd. All rights reserved.
doi:10.1016/j.mod.2004.11.012
* Corresponding authors. Tel.: C1 574 631 2895; fax: C1 574 631 7413
(TSV) or Tel.: C1 414 456 4996; fax: C1 414 456 6516 (EVS).
E-mail addresses: [email protected] (E.V. Semina), [email protected]
(T.S. Vihtelic).1 These authors made equal contributions to this paper.
screens using zebrafish (Danio rerio) identified mutants
with disrupted retina and lens development (Brockerhoff
et al., 1998; Fadool et al., 1997; Heisenberg et al., 1996;
Malicki et al., 1996; Vihtelic and Hyde, 2002; Vihtelic et al.,
2001).
Zebrafish lens development proceeds rapidly, with the
morphologically identifiable stages being identical to the
stages observed in other vertebrates (Easter and Malicki,
2002). The lens placode is recognizable at approximately
16 h post-fertilization (hpf) and the lens vesicle detaches
from the surface ectoderm by 24 hpf (Malicki, 2000;
Schmitt and Dowling, 1999). By 36 hpf, the morphologi-
cally distinct epithelial and fiber cells are visible and a fully
functional lens is present by 72 hpf (Easter and Nicola,
1996; Schmitt and Dowling, 1994). Fiber cells are
continually added to the growing lens throughout the
life of mammals and fish, which requires the tight regulation
of cell proliferation, migration and differentiation
Mechanisms of Development 122 (2005) 513–527
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X. Shi et al. / Mechanisms of Development 122 (2005) 513–527514
(McAvoy et al., 1999). The lens epithelial cells transition
from a central quiescent zone into the germinative zone as
they enter mitosis. They migrate into the lens equatorial
zone or bow region, where the cells elongate and lose their
nuclei and other membrane-bound organelles as they
differentiate into fiber cells (Bassnett and Beebe, 1992;
Wride, 2000).
Pitx3 is one of three homeobox gene family members
(designated Pitx1, Pitx2 and Pitx3) found in a variety of
animal species (Gage et al., 1999a). The Pitx protein family
plays important roles during the development of a wide
variety of tissues (Gage et al., 1999a). Pitx1 knockout mice
exhibit hind limb abnormalities, anterior pituitary defects
and cleft palate, while mice homozygous for the Pitx2 gene
deletion die before birth with anomalies in the heart, gut,
lung, pituitary and eye (Kitamura et al., 1999; Lanctot et al.,
1999; Lin et al., 1999; Lu et al., 1999; Szeto et al., 1999). In
contrast, Pitx3 developmental expression in mammals is
largely restricted to the eye and midbrain (Semina et al.,
1997, 1998; Smidt et al., 1997), with mutations in the human
PITX3 gene being responsible for congenital ocular
phenotypes such as Anterior Segment Ocular Dysgenesis
(ASOD), Peter’s anomaly and autosomal dominant con-
genital cataract (Semina et al., 1998). In addition, mutations
in the mouse Pitx3 gene are responsible for the aphakia (ak)
phenotype, which is characterized by small eyes that lack
lenses (Rieger et al., 2001; Semina et al., 2000; Varnum and
Stevens, 1968). These phenotypes are consistent with the
Pitx3 expression patterns in these species. During the initial
stages of eye development, Pitx3 is expressed throughout
the presumptive lens ectoderm and becomes further
restricted to the epithelial cells at the lens equator as lens
fiber differentiation begins (Semina et al., 1997). The Pitx3
expression pattern suggests it is important for both lens
development and continuous growth. While lens induction
and the accompanying morphological changes during
differentiation have been correlated with a hierarchy of
transcription factors (Ashery-Padan et al., 2000; Grindley
et al., 1995; Henry et al., 2002; Kamachi et al., 1998, 2001;
Ogino and Yasuda, 2000; Oliver et al., 1996; Wigle et al.,
1999), the role of Pitx3 in these processes has not been
precisely defined.
We identified and began characterizing a zebrafish pitx3
gene to complement our genetic analyses of vertebrate lens
and anterior segment development. The zebrafish pitx3
ortholog displays striking conservation with the Pitx3 genes
in human, mouse and frog at several different levels
(Pommereit et al., 2001; Semina et al., 1997, 1998; Smidt
et al., 1997). First, the zebrafish Pitx3 protein possesses over
62% amino acid identity with other vertebrate Pitx3
proteins. Second, the zebrafish pitx3 gene is localized to a
region of chromosome 13 that is syntenic to the human
chromosome 10 region that contains PITX3. Third, the
zebrafish pitx3 gene is initially expressed in the developing
lens, diencephalon and the pituitary region and later its
expression in the eye is restricted to the lens equator. Fourth,
morpholino-mediated protein reduction demonstrates the
zebrafish Pitx3 protein plays a critical role during lens
development. Surprisingly, the morphants also exhibit the
loss of differentiated neurons in the retina, which is different
from the mouse ak mutant eye phenotype. While our results
indicate that Pitx3 functions in lens development were
conserved during evolution, the Pitx3 requirement in retinal
development or maintenance may reveal either a previously
unknown function of the Pitx3 orthologs or a novel function
specific to zebrafish Pitx3. Thus, the zebrafish pitx3 gene
provides avenues to further elucidate the molecular
mechanisms of ocular development.
2. Results
2.1. Cloning and characterizing the zebrafish pitx3 gene
The zebrafish pitx3 cDNA sequences were amplified by
PCR from adult zebrafish eye cDNA using primers
corresponding to the Xenopus pitx3 sequence. The amino
acid sequence deduced from the cDNA (Fig. 1A) showed
high amino acid identity with the Pitx family of proteins
from different species, but the greatest identity was to Pitx3.
The zebrafish sequence shared 63% (Pitx1), 63% (Pitx2)
and 90% (Pitx3) amino acid identity with the Xenopus Pitx
proteins. The zebrafish sequence also showed 62 and 63%
amino acid identity with the mouse and human Pitx3
proteins, respectively (Fig. 1A). The previously identified
conserved functional domains in this protein family, the
homeobox and OAR domains, shared nearly 100% amino
acid identity between the zebrafish and all other Pitx3
proteins (Amendt et al., 1999; Brouwer et al., 2003;
Furukawa et al., 1997; Semina et al., 1996). The only
other known zebrafish Pitx protein, Pitx2, showed 100%
identity in the homeobox domain, 75% identity in the
C-terminal region and 17% identity in the N-terminal region
with this new zebrafish Pitx sequence. Based on these
homologies, and in consultation with the Zebrafish Nomen-
clature Committee, this zebrafish gene was named pitx3
(Fig. 1A). Although the zebrafish genomic sequence is not
complete, searches of the nucleotide and protein databases
failed to identify a duplicated pitx3 gene, which suggests
that zebrafish possess only one pitx3 orthologue.
The pitx3 cDNA sequence was compared with the
genomic sequences in the zebrafish database (BLAST;
http://www.sanger.ac.uk/Projects/D_rerio/). Genomic con-
tig ctg11787 contained all of the pitx3 gene sequence except
for the first exon and part of the second intron (Fig. 1B). We
PCR amplified these two regions (p3x_1 and p3x_2;
Fig. 1B) from genomic DNA and determined that the
pitx3 gene encompasses approximately 16.5 kb, with four
exons (240, 129, 208 and 704 bp) separated by introns of
5.6, 2.6 and 7.4 kb (Fig. 1B). This genomic structure is
conserved with the Pitx3 genes from other species (Semina
et al., 1997, 1998).
Fig. 1. Zebrafish Pitx3 protein sequence comparison and genomic structure. (A) The zebrafish Pitx3 amino acid sequence is aligned with the mouse, human and
Xenopus Pitx3 sequences. The homeobox and OAR domains are shown in bold and italics, respectively. The amino acid identity between the zebrafish and
mammals are highlighted in green, while the identity between zebrafish and Xenopus is shown in yellow. The peptide sequence used to generate the Pitx3
polyclonal antiserum (amino acids 221–238) is underlined. (B) The zebrafish pitx3 gene is composed of four exons and three introns. The exon sizes (in bp) are
shown in the four boxes, while intron sizes are indicated below in kilobases (kb). The locations of the translation start and stop codons (marked by arrows) are
within the second and fourth exons, respectively. The relative locations of the homeobox and OAR domains are shown in rust and blue, respectively. The
ctg11787 genomic contig and the two PCR products (p3x_1 and p3x_2) that we generated to assemble the pitx3 gene are also shown.
X. Shi et al. / Mechanisms of Development 122 (2005) 513–527 515
The zebrafish pitx3 gene was mapped to chromosome 13
using the mouse-zebrafish LN54 radiation hybrid panel
(Hukriede et al., 1999, 2001). The pitx3 gene mapped
closest to SSLP marker Z13611 (LOD 12.5), with the
second best linked marker possessing a lower LOD score of
4.2. This region of zebrafish chromosome 13 is syntenic to
human chromosome 10, which also contains PITX3
(Barbazuk et al., 2000; Semina et al., 1998).
2.2. Gene expression during development and adulthood
Zebrafish pitx3 gene expression was examined by RT-
PCR using RNA extracted from embryos and adult tissues
(Fig. 2A). While low levels of pitx3 mRNA were detected as
early as 3–8 hpf, high levels of pitx3 expression were first
identified at 24 hpf and remained high through 120 hpf. In
the adult, high levels of pitx3 expression were detected in
the eye and much lower levels in the internal organs, which
included a mixture of liver, gastrointestinal system, heart,
genitourinary system and pancreas (Fig. 2A).
To examine the spatial expression of pitx3 during
development, we performed in situ mRNA hybridization
on whole-mount embryos using a full-length pitx3 ribop-
robe. At 24 hpf, pitx3 expression was largely restricted to
the forebrain and lens (Fig. 2B (a, e)). High levels of
expression were also detected in the pectoral fin buds at
24 hpf (not shown). At 48 hpf, the strongest pitx3 expression
was detected in the diencephalon and pituitary, while the
lens expression became restricted to a subpopulation of cells
at the lens equator (Fig. 2B (b, f)). At 72 hpf, expression
became evident in cartilage surrounding the mouth (Fig. 2B
(c, g)). At 96 hpf, pitx3 expression was detected in the iris of
the eye, nests of cells within Meckel’s cartilage of the
developing lower jaw and the branchial arches (Fig. 2B
(h–j)). In addition, expression persisted in the pectoral fins
and was identified within the developing musculature along
the trunk at 96 hpf (Fig. 2B (k, i)).
2.3. Morpholino-mediated knockdown of zebrafish
Pitx3 expression
To examine the functions of Pitx3 during eye develop-
ment, we injected three different morpholino anti-sense
oligos (Morph1, 2 and 3) into 1–4 cell stage embryos. The
morpholinos were designed to hybridize either the 5 0
untranslated sequences of the pitx3 mRNA near the
inititation codon (Morph1 and 2) or the splice donor site
at the 5 0 end of intron 3 (Nasevicius and Ekker, 2000). A
control morpholino containing five mismatched bases
relative to Morph1 was also tested. To verify
Fig. 2. Temporal and spatial expression patterns of the pitx3 gene. (A) RT-PCR results from cDNA isolated from various staged embryos and larvae.
Additionally, RT-PCR products resulting from different adult tissues are shown. Molecular weight markers and a control PCR reaction lacking DNA template
are shown in the first and last lanes, respectively. The lower panel shows amplification of b-actin as a control. (B) The in situ hybridization of embryos and
larvae using the full-length pitx3 riboprobe. Whole-mount embryos at 24, 48, 72 and 96 hpf (a–d). Frontal sections of 24, 48 and 72 hpf embryos at the level of
the eye (e–g). The arrowheads in (e) and (f) point to lens, while expression surrounding the mouth is shown in (g). At 96 hpf, expression is shown within the iris
(h), Meckel’s cartilage (i), branchial arch (j), pectoral fin (k) and lateral trunk (l). Abbreviations: de, diencephalon; le, lens; pi, pituitary.
X. Shi et al. / Mechanisms of Development 122 (2005) 513–527516
the morpholino reduced Pitx3 protein levels, we developed
a polyclonal antiserum that recognizes the zebrafish 32 kDa
Pitx3 protein (Fig. 3A, lane 1). All the anti-pitx3
morpholinos produced the same morphological phenotypes
including small eyes, malformed pectoral fins and mild to
moderate body axis deviation. In addition, histological
analysis demonstrated nearly identical lens and retinal
phenotypes in the 5 0 UTR morpholino-injected fish
compared to the morphants generated by splice donor
interference (not shown). We will document the anti-pitx3
Morph1 hereafter.
The relative levels of the Pitx3 protein in the morphants
were compared to uninjected and five base mismatched
morpholino-injected control larvae (Fig. 3A). The Pitx3
protein was nearly undetectable in the morphant larvae at 3,
4, 5 and 7 dpf (lanes 2, 5, 8 and 11) compared to the five
Fig. 3. Morpholino knockdown of Pitx3 protein and the morphant phenotypes. (A) Immunoblot analysis of protein extracts from Morph1-injected embryos
(M), a five base mismatch control (mmC) and an uninjected control (uiC) at 3 dpf (lanes 2–4), 4 dpf (lanes 5–7), 5 dpf (lanes 8–10) and 7 dpf (lanes 11–13).
Lane 1 reveals the 32 kDa Pitx3 protein in 24 hpf whole embryo extract using the anti-Pitx3 polyclonal serum. Pitx3 protein expression was reduced in the
morphant extracts compared to the mismatch and uninjected controls. Immunodetection of actin revealed that equivalent amounts of protein were loaded for all
three samples from each time point (not shown). (B–Q) The pitx3 morphant phenotypes. Lateral views of wild type, morphants and mismatch control fish at
3 dpf (B–E). The small morphant eyes are shown in lateral views relative to the wild type and mismatch controls at 3 and 5 dpf (F–H and I–K, respectively). At
5 dpf, the morphants lack normal lower jaws (J; arrow) and pectoral fins (M; arrow). At 7 dpf, the morphant eyes are further reduced in size compared to the
wild type and mismatch control (O–Q).
X. Shi et al. / Mechanisms of Development 122 (2005) 513–527 517
base mismatched morpholino control larvae (lanes 3, 6, 9
and 12). The Pitx3 expression in the uninjected control
larvae (lanes 4, 7, 10 and 13) was indistinguishable from
the five base mismatched morpholino control larvae. Thus,
the reduction in Pitx3 protein expression is specific to the
injection of the pitx3 morpholinos.
The first detectable morphological phenotype observed
after injecting the anti-pitx3 morpholinos was a small eye,
which was evident at 3 dpf (Fig. 3B–H). Some of the
morphants exhibited an abnormal body axis (Fig. 3D) and/or
lens opacity (Fig. 3G). The percentage of morphant larvae
exhibiting the small eye phenotype was related to the
concentration of the injected morpholino and ranged from
46 to 92% (0.5–2.0 ng/nl). The injection of the five base
mismatched control morpholino produced larvae that were
indistinguishable from wild type (compare Fig. 3E, H to B,
F, respectively). At 5 dpf, the visible area of the morphant
eyes was 10,830.4G2604.3 mm2 (nZ83 eyes), compared to
18,286.4G1714.0 (nZ31) and 18,355.3G1512.8 mm2 (nZ50), for the uninjected and five base mismatched morpholino
control eyes, respectively. In addition, the morphant jaws
appeared abnormal relative to the control larvae (Fig. 3I–K)
and development of the pectoral fins was disrupted
(Fig. 3L–M). By 7 dpf, the reduced eye size in the morphants
relative to the controls was severe (Fig. 3O–Q). Therefore,
the reduction in Pitx3 protein expression resulted in a
progressive reduction in eye size, which was accompanied
by abnormalities in jaw and pectoral fin development.
2.4. Histological analysis of the anti-pitx3 morphant
eye phenotypes
To examine the eye defects, we compared the histology
of the anti-pitx3 morphant eyes to wild type (Fig. 4A–I). To
confirm that the morphant eye phenotypes were specifically
due to inhibition of pitx3 translation, we also examined
Fig. 4. Histological analysis of the morphant lens and retina phenotypes. Stained eye sections of wild type (left column) and anti-pitx3 morphants at low and
high magnification (center and right columns, respectively) at 3, 5 and 7 dpf. Sections of control eyes (wild type and mismatch control) are shown in the bottom
row of panels (J–L). Retinal cell pyknosis (long arrows in B, E, F, H and I) and retention of the lens fiber cell nuclei (short arrows in B and C) are visible in the
morphants, but absent in the controls. At 5 dpf, the epithelial cells in the morphant lens are irregularly shaped and overlie one another in the lens cortex (E, F).
The lens epithelial cell layer contains gaps that lack nuclei or exhibits overlapping cells (B and C, arrowheads). Gaps exist between the lens epithelial cells and
the underlying fiber cells in the distal lens (E and F, asterisks). Central lens fiber degeneration (double arrows) is observed in the morphant lens (E, F) at 5 dpf,
but not in the wild-type lens (D). At 7 dpf, the retinal regression and lens degeneration in the morphant (H, I) are severe relative to wild type (G). The lens and
retina of the mismatch control (K, L) appear identical to the wild type (J). Abbreviations: PL, photoreceptor layer; INL, inner nuclear layer; GCL, ganglion cell
layer; OpN, optic nerve; LEC, lens epithelial cells; LN, lens nucleus; LC, lens cortex; IPL, inner plexiform layer. The scale bars represent 50 mm.
X. Shi et al. / Mechanisms of Development 122 (2005) 513–527518
embryos injected with the five base mismatched control
morpholino, which failed to produce any detectable
phenotypes (Fig. 4K, L). At 3 dpf, the laminated wild-type
zebrafish retina is composed of the photoreceptor, inner
nuclear and ganglion cell layers (Fig. 4A). The lens contains
a single layer of epithelial cells and the majority of the lens
fibers have differentiated and lost their nuclei (Fig. 4A).
The nuclei of the newly differentiating fiber cells, which are
located proximally in the lens (near the retinal ganglion cell
layer), can be identified by their elongated morphology. At
3 dpf, the morphant retina lacked the laminar organization
seen in wild type and contained pyknotic nuclei that were
not detected in the control retinas (Fig. 4B, long arrow). The
morphant lens at 3 dpf exhibited two abnormalities. First,
the lens epithelial cell layer contained gaps that lacked
nuclei (Fig. 4B, C; arrowheads). Second, many of the
morphant lens fiber cells, including those in the lens core,
retained their nuclei (Fig. 4B, C; short arrows).
Fig. 5. Morphology and spatial organization of the lens nuclei. Propidium
iodide-stained wild type (A, B), morphant (C, D) and mismatch control
(E, F) frozen eye sections. At 3 dpf, the normal retinal laminar arrangement
(A) and lens epithelial cell organization (B) is shown. The epithelial cells
covering the distal aspect of the lens (LEC) and the proximal elongating
fiber cells (eLFC) are indicated by arrows (A, B). The 3 dpf morphant lens
retains the central fiber cell nuclei (C) and the epithelial cell population
exhibits enlarged and irregularly shaped nuclei and multilayering at 3 and
5 dpf (C, D). The mismatch control retina and lens (E, F) are
indistinguishable from wild type (A, B). Abbreviations: PL, photoreceptor
layer; INL, inner nuclear layer; GCL, ganglion cell layer; LEC, lens
epithelial cells; eLFC, elongating lens fiber cells. Scale bars in A, B, E and
F represent 50 mm, while the scale bars in C and D are 20 mm.
X. Shi et al. / Mechanisms of Development 122 (2005) 513–527 519
Between 5 and 7 dpf, the morphant eyes exhibited a
reduction in size, increased retinal disorder and lens
degeneration. At 5 dpf, the wild-type photoreceptor outer
segments were observed in both the ventral and dorsal retina
(Fig. 4D, double arrowheads). In contrast, the 5 dpf
morphant photoreceptor cells largely lacked outer segment
structures (Fig. 4E, double arrowheads). In addition,
pyknotic nuclei were observed in the photoreceptor and
inner nuclear layers of the morphant retina and also in the
proximal lens cortical region (Fig. 4E, F; arrows). The 5 dpf
morphant lenses were much smaller than wild type and were
characterized by central fiber cell degeneration (Fig. 4E, F;
double arrows). The lenses also displayed gaps between the
fiber and epithelial cell layers (Fig. 4E, F; asterisk). At 7 dpf
the morphants largely lacked retinal lamination (Fig. 4H)
and continued to exhibit pyknotic nuclei within the lens and
retina (Fig. 4H, I; arrows). Furthermore, the morphant eyes
lacked anterior chambers and were characterized by severe
lens degeneration (Fig. 4H, I; double arrows). Thus, the
morphant eyes exhibited progressive degeneration of both
the lens and retina from 3 to 7 dpf.
2.5. Morphant lens and retinal phenotypes are further
defined by immunohistochemistry
We examined the cellular organization of the lens and
retina in control and morphant frozen eye sections by
labeling the nuclei with propidium iodide (Fig. 5). At 3 dpf,
the wild-type retina possessed the characteristic retinal
lamination pattern, with three nuclear layers separated by
plexiform layers lacking nuclei (Fig. 5A). The wild-type lens
epithelial cell nuclei were uniformly arranged in a single
layer that covered the distal and lateral lens surfaces (Fig. 5B;
LEC). In addition, the elongating lens fiber cells were
observed proximal to the lens equator (Fig. 5B; eLFC). As
expected, the terminally differentiated fiber cells in the center
of the wild-type lens lacked nuclear staining (Fig. 5B). At
3 dpf, the variable nuclear staining pattern of the morphant
lens was consistent with the histological analysis. The
morphant lenses displayed large irregularly shaped epithelial
cell nuclei that were layered upon one another (Fig. 5C).
Similarly, the 5 dpf morphant lenses exhibited epithelial
cells with a variety of nuclear shapes and sizes that were
several layers thick (Fig. 5D). The absence of propidium
iodide-stained nuclei within the lens nucleus was consistent
with the central lens fiber degeneration observed in histogical
sections at 5 dpf (compare to Fig. 4E, F). The retinal and lens
nuclear patterns in the mismatch control embryos appeared
identical to the wild-type patterns (Fig. 5E, F).
We also examined the pitx3 morphant lenses by
localizing actin and the lens-specific antigen zl-1 (Fig. 6).
Actin was localized in a concentric pattern within the central
lens and the cortex of the wild-type lens at 3 dpf
(Fig. 6A, B), which is consistent with fiber cell expression.
Elongating fiber cells within the proximal lens cortex were
also stained, which coincides with the region of fiber cell
differentiation. The elongating fiber cells appeared to extend
from the proximal lens surface and conferred an ellipsoid
shape to the growing wild-type lens (Fig. 6B; eLFC). Actin
also localized to the distal and lateral membranes of the lens
epithelial cells (Fig. 6A, B; arrowheads). While the
morphant lens exhibited robust actin staining in the central
and cortical regions (Fig. 6C; asterisks), the distal epithelial
cell membrane staining was diffuse and the lateral epithelial
cell staining was not detected (Fig. 6D, arrowheads). At
3 dpf, the actin-stained morphant elongating fiber cells
appeared shorter and more stout than wild type (Fig. 6D,
arrows), which produced a smaller and more spherical lens
rather than ellipsoid-shaped. The actin staining within the
wild-type retinal outer (OPL) and inner (IPL) plexiform
layers (Fig. 6A, B) was also absent in the 3 dpf morphant
Fig. 6. Actin fails to localize properly in the morphant lens epithelial cells.
Phalloidin-AlexaFluor 488 (A–D) was used to stain the filamentous actin in
lenses and retinas of wild type (A, B) and morphants (C, D) at 3 dpf. In the
control lens, actin is localized in a concentric pattern associated with the
fiber cell membranes in both the nuclear and cortical regions (A, B). Lens
epithelial cells (A, LEC) exhibit actin localization to both the distal (basal)
and lateral aspects of the individual epithelial cells (B, arrowheads). Actin
staining of the morphant lens reveals poorly defined elongating fiber cells
(D, arrows) and a diffuse actin network in the lens epithelial cells (D,
arrowheads). The sections also reveal intense actin staining within the
retinal inner (IPL) and outer (OPL) plexiform layers (A, B), which is absent
in the morphant (C). The lens-specific zl-1 monoclonal antibody labels the
cortical region of the wild-type lens (E, arrowheads) and is localized near
the apical–apical interface between the epithelial and fiber cells (E, arrows).
In the morphant (F), the zl-1 protein is scattered throughout the lens and
appears to be associated with the nucleated fiber cells (arrowheads).
Abbreviations: PL, photoreceptor layer; INL, inner nuclear layer; GCL,
ganglion cell layer; OPL, outer plexiform layer; IPL, inner plexiform layer;
LEC, lens epithelial cells; eLFC, elongating lens fiber cells; OpN, optic
nerve. Scale bars represent 50 mm.
X. Shi et al. / Mechanisms of Development 122 (2005) 513–527520
retina (Fig. 6C). This is consistent with the absence of
lamination that was observed by histology in the 3 dpf
morphant (Fig. 4B).
The zl-1 monoclonal antibody detects an unknown lens-
specific antigen. During zebrafish eye development, the zl-1
antigen is first detected at 21–22 hpf and becomes localized
to the lens cortical region as fiber cell differentiation
proceeds (Vihtelic et al., 2001). The wild-type lens
exhibited zl-1 within the outer lens cells and near the apical
region of the epithelial cell layer at 3 dpf (Fig. 6E,
arrowheads and arrows, respectively). In contrast, the zl-1
expression in the morphant was dispersed in a punctate
pattern throughout the lens and appeared to be associated
with the nucleated fiber cells in the central region (Fig. 6F,
arrowheads). While fiber cell elongation and actin
expression in the morphant lens suggest that some elements
of fiber cell maturation are proceeding normally, the delay
in fiber cell nuclear regression and attenuated fiber cell
elongation reveals that other elements must be disrupted.
The actin-staining pattern also suggests that lens epithelial
cell differentiation is affected.
The presence of pyknotic nuclei in the morphant retinas
(Fig. 4) suggested that some retinal cells were dying. In
addition, the lack of outer segments suggested photo-
receptor maturation or survival was affected in the
morphants. To examine the presence and patterning of
the different neuronal types, we performed immunohisto-
chemical localization experiments on frozen morphant eye
sections at 5 dpf (Fig. 7). At 5 dpf, the double cone
photoreceptors are spread along the entire retinal length in
wild type and the mismatch control, but are dramatically
reduced in the morphant retinas (Fig. 7A–C). The short
single cones, identified by immunodetection of the UV
opsin, were also greatly reduced in the morphant retina
compared to the wild type and mismatch control retinas
(not shown). The rod photoreceptors were identified by
immunodetection of the rhodopsin protein within the cell
outer segments (Vihtelic et al., 1999). The morphant
retinas exhibited a very sparse rhodopsin-positive cell
population, with the photoreceptor layer displaying large
gaps in rhodopsin expression (Fig. 7D–F). The rod and
cone photoreceptors that are present in the morphant retina
are primarily localized to the central region, with the
margins largely lacking photoreceptors (Fig. 7B, E). The
retinal amacrine and ganglion cells were identified using a
monoclonal antibody to detect the HuC/D RNA binding
protein (Marusich et al., 1994). Wild-type HuC/D
expression is restricted to the distal inner nuclear (INL)
and the ganglion cell (GCL) layers and extends to the
retinal peripheral margin (Fig. 7G). While the morphant
retinas displayed HuC/D-positive cells, the signal was less
intense and largely confined to the more central cells of the
retina’s inner layers, with no detectable HuC/D-labeled
cells near the peripheral margins (Fig. 7H). Thus, the
morphant retina exhibits greatly reduced numbers of
neurons in each of the retinal layers. The patchiness of
immunolabeling and the pyknotic nuclei suggest that the
different neuronal classes in the retina require Pitx3
expression for survival, which is surprising because pitx3
expression was not detected in the retina or retinal
pigmented epithelium. Therefore, the retinal phenotype is
likely secondary to the lens defect.
Fig. 7. Reduction in retinal neurons revealed by immunohistochemistry at 5 dpf. Wild type (left column), morphant (center column) and mismatch control
(right column) retinal cell types were identified by immunolocalization of zpr-1 (double cone photoreceptor cells, A–C), rhodopsin (rod photoreceptor outer
segments, D–F), and HuC/D (amacrine and ganglion cells, G–I) in frozen eye sections. While some double cone cells are identified in the morphant (B,
arrowheads), large regions of the retina lack this cell type (B, arrows). Similarly, only small numbers of rhodopsin-positive photoreceptors were detected in the
morphants (E, arrowheads) compared to the wild type (D) and mismatch control retinas (F). The amacrine and ganglion cells (G–I) were also reduced in the
morphants and were characterized by an absence of immunolabeling towards the retinal margins (compare H to G and I). Abbreviations: PL, photoreceptor
layer; INL, inner nuclear layer; GCL, ganglion cell layer; OpN, optic nerve; L, lens. The scale bars represent 50 mm.
X. Shi et al. / Mechanisms of Development 122 (2005) 513–527 521
3. Discussion
The development of the ocular lens is precisely
regulated and directly affects other eye tissues, including
anterior segment structures and the retina. Mutations in
the Pitx3 transcription factor result in anterior segment
mesenchymal dysgenesis and cataract in humans and
aphakia in mice (Rieger et al., 2001; Semina et al., 1998,
X. Shi et al. / Mechanisms of Development 122 (2005) 513–527522
2000). To study the roles of Pitx3 in eye development, we
cloned a zebrafish pitx3 ortholog and characterized its
developmental expression pattern and functions in zebra-
fish embryos and larvae. Our analyses demonstrated the
zebrafish pitx3 gene is expressed in both ocular and
extraocular tissues, which partially overlaps with the
mammalian expression pattern. Morpholino-mediated
Pitx3 protein knockdown resulted in abnormal lens
development and suggests that Pitx3 is required for lens
differentiation and growth. The pitx3 morphants also
exhibited retinal defects that were characterized by cell
death and significant reductions in some retinal cell types.
While our findings support a conserved function for
zebrafish Pitx3 in lens development, the retinal defects
highlight an important difference with the mouse aphakia
(ak) mutant phenotype.
The formation of a functional lens occurs in two phases
and pitx3 activity appears to be critical during both.
Initially, the lens vesicle cells differentiate into anterior
epithelial cells and primary fiber cells, which will
compose the lens nucleus (McAvoy et al., 1999, 2000).
The pitx3 temporal and spatial expression patterns suggest
it may be involved in the early stages of lens
differentiation. Pitx3 transcripts are detected at the
beginning of the lens placode stage in mouse (Semina et
al., 2000, 1997), Xenopus (Pommereit et al., 2001) and in
zebrafish (Fig. 2). The zebrafish pitx3 expression levels
increased by 24 hpf, which corresponds to the initial
differentation of lens primary fibers and epithelial cells
(Easter and Malicki, 2002; McAvoy et al., 1999). The
pitx3 morphant phenotypes are consistent with disruptions
in the normal differentiation of the lens epithelial and
fiber cells and the proper formation and maintenance of
the lens nuclear fibers (Figs. 4–6).
The second phase of lens formation is characterized
by lens growth through the continual addition of
secondary fiber cells, which differentiate from the
epithelial cell population. A germinative ring of mitoti-
cally active epithelial cells is maintained around the lens
central region (Graw and Loster, 2003). The daughter
cells emerging from this germinative zone migrate or are
displaced into the equatorial or bow region of the lens
where they elongate and differentiate into the secondary
lens fibers (Graw and Loster, 2003; McAvoy et al.,
2000). Therefore, lens fiber differentiation is continually
initiated in the equatorial zone during lens growth. In
zebrafish, pitx3 expression is detected throughout the lens
at 24 hpf, but the expression becomes restricted to the
lens equatorial region by 48 hpf (Fig. 2B), which is
equivalent to the restriction of the mouse Pitx3
expression to the lens equator region (Semina et al.,
1997, 1998). Thus, pitx3 initially exhibits widespread
lens expression during the primary differentiation phase
of lens formation and is then restricted to the region of
secondary fiber cell differentiation during the phase of
lens growth.
We examined the function of zebrafish Pitx3 during
eye development by selective reduction in Pitx3 protein
levels using morpholino anti-sense oligonucleotides. We
used three different anti-pitx3 morpholinos that all
produced small eyes and very similar lens and retinal
histological phenotypes. Two of the morpholinos were
designed to prevent translation of the Pitx3 protein by
hybridizing in the 5 0 untranslated region of the transcript,
while the third morpholino prevented proper pitx3
splicing. We also used a control morpholino that differed
by five bases from the Morph1 sequence. This control
morpholino failed to cause any macroscopic or histologi-
cal abnormalities in the injected embryos. Finally, we
used a polyclonal antibody generated against a zebrafish
Pitx3 peptide sequence to confirm that the Pitx3 protein
was reduced in the morphants relative to the controls.
Thus, the morphant phenotypes are likely specific for the
reduced Pitx3 protein expression. Mammalian Pitx3
expression is largely restricted to the developing eye
and midbrain (Gage et al., 1999a; Nunes et al., 2003;
Semina et al., 1997; Smidt et al., 1997), although
transcripts were detected during development in other
tissues such as the mesenchyme around the hyoid bones
and femur (Semina et al., 1998). In addition to the eye
phenotype, we identified abnormalities in mandible and
pectoral fin formation (Fig. 3J and M). Although zebrafish
pitx3 expression was detected in the diencephalon,
branchial arches and trunk muscle (Fig. 2B), we have
concentrated this phenotypic analysis on the eye.
Examination of the morphant lens morphology
suggests that the reduced Pitx3 expression affects lens
growth, rather than lens induction or the initial differen-
tiation of epithelial and primary fiber cells. Although the
morphant lenses were severely degenerated at 7 dpf, both
lens epithelial and fiber cells were identified at 3 and
5 dpf based on histological and immunohistochemical
analyses. However, the morphant fiber cell morphology
suggested that terminal fiber cell differentiation was
incomplete. In addition, the morphant lens epithelial
cells were disordered and lacked the morphology and
actin localization pattern that characterized the wild-type
cells. Transgenic expression of dominant negative forms
of the mouse FGF receptor-1 driven by the aA crystallin
promoter resulted in similar lens phenotypes (Chow et al.,
1995; Robinson et al., 1995). The failure to complete
some aspects of cell differentiation in the morphant could
affect cell viability and lead to the degeneration of the
morphant lenses.
Pitx3 mutations cause the mouse aphakia (ak) mutant
phenotype, which consists of small eyes that lack lenses
(Rieger et al., 2001; Semina et al., 2000; Varnum and
Stevens, 1968). While the pitx3 morphant lens defects
resemble the ak phenotype, notable differences suggest
that different functional phases of lens development are
affected in each organism. The first abnormality in the
ak eyes occurs slightly before closure of the lens pit.
X. Shi et al. / Mechanisms of Development 122 (2005) 513–527 523
Cells that are released by the lens epithelium progress-
ively accumulate in the lens vesicle (Varnum and
Stevens, 1968; Zwaan, 1975). The lens vesicle also
fails to detach from the ectoderm and stays connected
through the lens stalk (Grimm et al., 1998; Semina et
al., 2000; Varnum and Stevens, 1968). In contrast, the
pitx3 morphant lens failed to exhibit either the
accumulating lens epithelial cells or the persistent lens
stalks. The ak lens vesicle cells also never elongate to
become lens fibers, which suggests that primary lens
differentiation fails. While the primary differentiation of
the pitx3 morphant lens occurred, the morphant fiber
cells failed to terminally differentiate based on their
retention of nuclei and stunted elongation. In addition,
the morphant lens epithelial cells exhibited aberrant
differentiation because they displayed disorganized actin
localization patterns. The morphant lenses also under-
went progressive degeneration, which suggests they
ultimately failed to maintain growth. While both the
ak and pitx3 morphant lenses exhibit defective lens
differentiation, the ak defect is manifested earlier in
development and results in the complete failure of lens
formation. These differences may reflect the relative
strength of the phenotypes (Gage et al., 1999b; Lehmann
et al., 2003; Ormestad et al., 2002), as the ak mutant
represents the null condition and the pitx3 morphant
may retain some functional Pitx3 protein. This residual
Pitx3 activity may be sufficient for the morphant lens to
develop further than the ak lens. While our failure to
identify a duplicated gene by in silico analysis does not
totally rule out the possibility of a pitx3 paralogue, the
Pitx3 protein may have an earlier role in mouse lens
development than in zebrafish. This does not preclude a
similar requirement for Pitx3 in terminal lens fiber and
epithelial cell differentiation in both organisms.
While the pitx3 morphant lens phenotype is less
severe than the ak lens developmental arrest, the cell
death characterizing the morphant retinas is more severe
than the ak retinal folding that occurs (Graw and Loster,
2003; Grimm et al., 1998). The pitx3 morphant retinal
cell death was marked by pyknotic nuclei in both the
inner and outer nuclear layers of the retinas. In addition,
the morphant photoreceptors failed to produce outer
segments and mature. The morphants also exhibited a
reduction in number and continuity of rod photo-
receptors, double and single cone photoreceptors, ama-
crine cells and ganglion cells. It is interesting that the
retinal margins, which correspond to the youngest
neurons, are largely devoid of any neurons in the
morphant retina (Fig. 7B, E, H). This suggests that loss
of Pitx3 may either block the differentiation of neurons
from the marginal zone or may result in the preferential
death of younger neurons. This potential requirement for
Pitx3 in the proliferating retinal margin cells may be
analogous to the requirement for Pitx3 in the lens
equatorial zone. Pitx3 expression in the mammalian
retina was not reported previously and we did not detect
expression in the zebrafish retina or the retinal pigmented
epithelium. Thus, the morphant retinal phenotype is
likely a non-autonomous effect from the aberrant lens
development.
Secondary retinal effects due to lens abnormalities
were observed in zebrafish when diptheria toxin was
expressed in the developing lens under the control of
the aA-crystallin promoter (Kurita et al., 2003). In
addition, lens transplantations between surface-dwelling
and eyeless cavefish demonstrated a central role for the
lens in retinal development (Yamamoto and Jeffery,
2000) and toxin-mediated lens ablation or surgical
removal in mouse resulted in secondary abnormalities
in the surrounding eye tissues (Coulombre and Cou-
lombre, 1964; Kaur et al., 1989). Indeed, chick
embryonic lens epithelial cells are necessary for the
proper differentiation of neural crest mesenchyme cells
to form the corneal endothelium and the lens provides
signals for iris and ciliary body induction (Beebe and
Coats, 2000; Thut et al., 2001). Additional experiments
utilizing lens transplantations between morphant and
wild-type zebrafish embryos may further elucidate the
lens roles during eye development in fish. Also, we are
currently developing antibodies for immunolocalization
of Pitx3 in zebrafish tissue sections to further examine
for Pitx3 protein expression in the retina and more
precisely delineate the expression patterns in the other
eye tissues.
While the effects of Pitx3 mutations on lens and
anterior segment development have been characterized in
both humans and mice, the genetic pathway for Pitx3
function has not been determined. The zebrafish model
offers significant opportunities for both forward and
reverse genetic analysis of gene roles and the molecular
dissection of eye development pathways. Characterizing
zebrafish mutants exhibiting lens or other anterior segment
defects using molecular markers identified by cloning
orthologs of known mammalian eye development genes
will facilitate mutant gene identification and function
determination. Furthermore, high-throughput screening for
target-selected mutations may generate allelic series,
which allow the study of essential genes and are valuable
for protein domain analysis (Colbert et al., 2001;
Wienholds et al., 2002). We identified a zebrafish pitx3
ortholog and characterized its expression pattern. Based
on protein knockdown analysis using anti-sense morpho-
linos, we confirmed that Pitx3 functions in some aspects
of lens cell differentiation and may also be required for
neuronal differentiation and viability in the retina, which
is different from the retinal phenotype described in ak
mice. The further study of pitx3 in zebrafish will allow
more precise identification of Pitx3 functions and inter-
acting factors necessary for eye anterior segment
formation.
X. Shi et al. / Mechanisms of Development 122 (2005) 513–527524
4. Experimental procedures
4.1. Animals
Zebrafish (Danio rerio) were raised and maintained on
a 14/10-h light/dark cycle. The embryos were obtained
by natural spawning, raised at 28.5 8C and the develop-
mental stage [indicated as either hours or days post-
fertilization (hpf or dpf)] determined by morphological
criteria (Kimmel et al., 1995). All experiments were
conducted in accordance with the guidelines set forth by
the animal care and use committees at the participating
institutions.
4.2. Gene cloning, genomic structure determination
and gene mapping
Partial zebrafish pitx3 cDNAs were obtained by PCR
amplification of zebrafish whole eye cDNA using primers
derived from the Xenopus pitx3 sequence. Two overlap-
ping amplification products were obtained using Taq DNA
polymerase and the primers: forward primer #1 5 0-
ATGGATTTCAATCTTCTGACAGA-3 0 and reverse pri-
mer #1 5 0-AAGCTGTTCTTGCAGAGCTC-3 0 for the 5 0
PCR product and forward primer #2 5 0-CATTTTAC-
CAGCCAGCAACT-3 0 and reverse primer #2 5 0-
GGATCGGCCAGTATGAAGGA-3 0 for the 3 0 PCR
product. The PCR parameters were denaturation at 94 8C
for 30 s, annealing at 48–55 8C for 45 s, and extension at
72 8C for 45 s. The PCR products were cloned into pCRII
Topo (Invitrogen, Carlsbad, CA) and sequenced. Two
overlapping sequences were assembled and used as a
BLAST query of the non-redundant database. This
nucleotide sequence is most homologous to the known
Pitx3 sequences in different species. A BLAST search of
the zebrafish genomic sequences (http://www.sanger.ac.
uk/Projects/D_rerio/) identified matching sequences in the
ctg11787 contig (Fig. 1B). Using this contig sequence, we
designed new primers that contained the predicted
translation initiation and stop codons (shown in bold) of
the zebrafish pitx3 gene (forward primer 5 0-CGGTA-
GAGGTGATGGATTTTA-3 0 and reverse primer 5 0-
GAAATCTAGACGCATCGCTTTCA-3 0) and amplifed
the entire zebrafish pitx3 open reading frame from
zebrafish adult eye mRNA using PfuUltra high-fidelity
DNA polymerase (Stratagene, La Jolla, CA). The genomic
contig ctg11787 contained most of the genomic pitx3
sequence except for two regions. We designed primers to
span these regions and used PCR to obtain the complete
pitx3 gene sequence. The zebrafish pitx3 sequences were
submitted to GenBank (BankIt Numbers 624871 and
624872 for the cDNA and genomic sequences,
respectively).
The pitx3 gene was mapped using the LN54 radiation
hybrid panel (Hukriede et al., 1999, 2001). Each DNA
clone in the panel was amplified in duplicate using
primers forward 5 0-TGAGCGTTTGTAGACGATGG-3 0
and reverse 5 0-ATGTCAGACTGCACTTCGC-3 0, which
are located in introns 1 and 2, respectively, and amplify a
293 bp fragment containing exon 2 of the pitx3 gene. The
amplification results were analyzed using RHVECTOR
(http://mgchd1.nichd.nih.gov:8000/zfrh/beta.cgi) with dis-
cordance of less than 5%.
4.3. RT-PCR and tissue in situ mRNA hybridization
Total RNA was extracted from different embryonic
stages and adult tissues (RNA Extraction Kit: Qiagen,
Valencia, CA). RT-PCR reactions of the full-length pitx3
cDNA open reading frame were amplified from 100 ng of
total RNA in each reaction (RT-PCR Kit; Stratagene,
LaJolla, CA) using the primers and conditions described
above. PCR amplification of b-actin was used in control
reactions. We performed tissue in situ hybridization as
previously described (Link et al., 2001) using a full-length
in vitro transcribed riboprobe.
4.4. Polyclonal antibody production
A zebrafish Pitx3 peptide (amino acids 221–238,
Fig. 1A) was conjugated to KLH and used to immunize
rabbits to generate a polyclonal antiserum (Proteintech
Group, Chicago, IL). The antiserum was purified by Protein
A column chromatography (Pierce, Rockford, IL).
For immunoblot detection of Pitx3 expression, zebra-
fish embryos (24 hpf) or larval heads (3, 4, 5 or 7 dpf)
were homogenized in 0.02 M NaPO4 (pH 7.4)/0.01 M
EDTA/0.5% Triton X-100. At least 20 embryos or larval
heads were homogenized for each time point that was
examined. The homogenates were microcentrifuged at
15,000!g for 3 min, the supernatants were mixed with
NuPAGE LDS Sample Buffer (Invitrogen) and heated at
70 8C for 10 min. The total protein equivalent of one
embryo or one larval head was loaded per lane,
electrophoresed through 4–12% Bis-Tris gels (NuPAGE
Novex; Invitrogen) and transferred to Hybond-P PVDF
membrane (Amersham, Piscataway, NJ). The primary
antibody was detected using the ECL system (Amersham)
as described (Vihtelic et al., 1999). The immunodetection
of actin in each sample was used as a control for protein
loading.
4.5. Morpholino oligomer injections
Morpholino oligomers were purchased from Gene Tools
(Corvallis, OR). Two different oligomers were designed to
hybridize to partially overlapping sequences in the 5 0
untranslated region of the zebrafish pitx3 transcript: 5 0-
CGGTCTAGTGGAGGTAATCCTCGAA-3 0 (Morph1) and
5 0-GGCTATGAATCCCGGTCTAGTGGAG-3 0 (Morph2).
In addition, an oligomer complementary to sequences
surrounding the intron three splice donor site was used:
X. Shi et al. / Mechanisms of Development 122 (2005) 513–527 525
5 0-CTCACAGAAGCAAGAGTACGGGTAC-3 0 (Morph3).
A control morpholino, containing five mismatched nucleo-
tides relative to Morph1, 5 0-CGCTCTACTGGACG-
TAATGCTCCAA-3 0 (mismatched nucleotides in bold)
was also used. The morpholinos were resuspended in
water and injected into 1–4 cell-stage embryos as
described (Wei et al., 2004). The morpholino concentration
used to generate the morphants for immunoblot analysis
was 1 ng/nl.
4.6. Histology and immunohistochemistry
For histological analysis, morphant and control larvae
were fixed in 2% formaldehyde/2.5% glutaraldehyde/0.1 M
cacodylate (pH 7.4) and processed into Polybed 812 as
described (Vihtelic and Hyde, 2000; Vihtelic et al., 2001).
Immunohistochemistry was performed on frozen larval
sections. The morphants and controls were fixed, embedded
in agarose and frozen sections were cut as described
(Vihtelic et al., 2001). TBS (pH 7.4)/5% normal goat serum/
0.3% Triton X-100 was used for tissue blocking and
antibody dilutions.
Lenses were evaluated by immunodetection of the zl-1
antigen (1:500; University of Oregon Monoclonal Antibody
Facility) as described (Vihtelic et al., 2001). Filamentous
actin in the lens and retina was stained using phalloidin-
AlexaFluor 488 (1:50; Molecular Probes, Eugene, OR) in
TBS/5% normal goat serum/0.5% Triton X-100. The retinal
amacrine and ganglion cells were detected using a
monoclonal antibody to HuC/D (1:30; Molecular Probes),
while the rods and short single cone photoreceptors were
detected using affinity-purified rhodopsin (1:5000) and UV
opsin antisera (1:1000), respectively (Vihtelic et al., 1999).
The double cone photoreceptors were identified using the
monoclonal antibody zpr-1 (1:200; University of Oregon
Monoclonal Antibody Facility). All antibody incubations
were overnight at room temperature and coverslips were
mounted using Vectashield (Vector Laboratories, Burlin-
game, CA). In some cases, Vectashield containing propi-
dium iodide was used to stain the nuclei.
Acknowledgements
Dr Xiangyun Wei provided technical advice for the
morpholino knockdown experiments. Debbie Bang and the
Freimann Life Sciences Center were responsible for
zebrafish husbandry at the University of Notre Dame.
Dr Ryan Thummel offered manuscript criticisms. We also
thank Dr Brian Link for consultation, Becki Tyler for
excellent technical assistance and Dr Zoltan Varga and
Sunit Dutta for their collegiality and expert comments. This
work was supported by NIH grants R01 EY13606 to E.V.S.
and R01 EY014455 to T.S.V.
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