Systematics of Necromys (Rodentia, Cricetidae, Sigmodontinae): species limits and groups, with...
Transcript of Systematics of Necromys (Rodentia, Cricetidae, Sigmodontinae): species limits and groups, with...
SYSTEMATICS OF NECROMYS (RODENTIA, CRICETIDAE,SIGMODONTINAE): SPECIES LIMITS AND GROUPS, WITHCOMMENTS ON HISTORICAL BIOGEOGRAPHY
GUILLERMO D’ELIA,* ULYSES F. J. PARDINAS, J. PABLO JAYAT, AND JORGE SALAZAR-BRAVO
Departamento de Zoologıa, Facultad de Ciencias Naturales y Oceanograficas, Universidad de Concepcion,Casilla 160-C, Concepcion, Chile (GD)Centro Nacional Patagonico, CC 128, 9120, Puerto Madryn, Chubut, Argentina (UFJP)Laboratorio de Investigaciones Ecologicas de las Yungas (LIEY), Facultad de Ciencias Naturales eInstituto Miguel Lillo, UNT, CC 34, 4107 Yerba Buena, Tucuman, Argentina (JPJ)Department of Biological Sciences, Texas Tech University, Lubbock, TX 79409, USA (JSB)
We present the most comprehensive systematic study to date of Necromys, a rodent genus distributed in open
areas north and south of Amazonia and in Andean grasslands. The study is based on sequences of the
cytochrome-b gene that were analyzed by parsimony and Bayesian approaches. The analyses include sequences
of 62 specimens from 51 localities from Argentina, Bolivia, Brazil, Colombia, Paraguay, Peru, Uruguay, and
Venezuela, representing all but 1 of the species currently recognized in the genus. Necromys was recovered as
a monophyletic group and we found a large polytomy at its base that involves 3 lineages. One, represented by the
Andean N. lactens, shows a marked phylogeographic pattern. The 2nd clade is formed by N. urichi from the
northern grasslands of South America and N. amoenus from the central Andes. Results suggest that each of these
taxa may represent more than 1 biological species. The 3rd clade is formed by lowland species found south of
Amazonia. Within this clade N. obscurus is sister to the remaining species. Haplotypes recovered from specimens
assigned to N. benefactus, N. temchuki, and N. lasiurus form a clade, but these taxa do not form reciprocally
monophyletic groups, nor does this large clade possess geographic structure. These genealogical results,
discussed in the context of genetic variation, are the basis of taxonomic (e.g., N. benefactus and N. temchuki are
regarded as junior synonyms of N. lasiurus) and biogeographic considerations.
Key words: Bolomys, Cabreramys, Cricetidae, gene tree, Muroidea, Necromys, South America, systematics, taxonomy,
Zygodontomys
The diversity of living sigmodontines is impressive; at last
count recent species numbered 380 in about 84 genera (D’Elıa
et al. 2007; Musser and Carleton 2005; see also D’Elıa and
Pardinas 2007). These numbers make Sigmodontinae the most
diverse subfamily of New World mammals and on a global
scale 2nd only to the Old World Murinae. Diversity of species
is unevenly distributed among sigmodontine genera, with
Akodon and Thomasomys having well over 40 species, whereas
many genera (e.g., Deltamys, Lundomys, and Sooretamys) are
monotypic, presenting the well-known (although not well-
understood) hollow-curve distribution of species richness (Reig
1986). Among the most diverse genera in the akodontine tribe,
Necromys includes 9 recognized species (Musser and Carleton
2005).
Necromys departs from other sigmodontine genera of
equivalent diversity (e.g., Abrothrix, Neacomys, and Bruce-pattersonius) because of its distribution. It occurs in open areas
from Venezuela and Trinidad and Tobago in the northern part
of South America to central Argentina in the south, and from
the Atlantic in Brazil, Uruguay, and Argentina to Andean
elevations of about 5,000 m above sea level. Moreover,
Necromys is the 2nd oldest known South American sigmo-
dontine genus (2nd only to Auliscomys), because N.bonapartei� is known from sediments of about 4–3.5 million
years of age, corresponding to the Chapadmalalan of the late
Pliocene (Pardinas and Tonni 1998). Therefore, strong
hypotheses about relationships among species in the genus
and the position of Necromys within Akodontini are of
fundamental importance to understanding sigmodontine sys-
tematics and biogeography.
* Correspondent: [email protected]
� 2008 American Society of Mammalogistswww.mammalogy.org
Journal of Mammalogy, 89(3):778–790, 2008
778
The phylogenetic position of Necromys within the sigmo-
dontine radiation is well established; it has been addressed by
the analysis of both mitochondrial and nuclear gene sequences
(D’Elıa 2003; Smith and Patton 1999). Necromys forms part of
the Akodon division of Akodontini, and is sister to Thalpomys(D’Elıa 2003).
Necromys is different from most other genera of sigmodon-
tines because it was originally described from a fossil form
(Ameghino 1889). Species currently recognized in Necromyshave been placed in Akodon, Bolomys, Calomys, Cabreramys,
Chalcomys, or Zygodontomys (Table 1; for a complete review
of the taxonomic history of Necromys see Anderson and Olds
[1989], Reig [1987], and Tate [1932]). The current contents of
Necromys were established 30 years ago, when Reig (1978)
resurrected Bolomys to encompass a group of species
morphologically similar to amoenus, type species of the genus
(Thomas 1916). Some of the species that Reig (1978, 1987)
placed in Bolomys had been, until then, considered part of
Akodon and Zygodontomys (e.g., amoenus, lactens, and
lasiurus), whereas others (e.g., benefactus, obscurus, and
temchuki) were in Cabreramys erected by Massoia and Fornes
(1967). Like Reig (1978), Massoia and Fornes (1967)
TABLE 1.—Abridged historic account of living taxonomic forms assigned to Necromys.
Gyldenstolpe (1932) Cabrera (1961) Reig (1987)a Musser and Carleton (2005) Present study
Bolomys amoenus Akodon (B. amoenus) B. amoenus Necromys amoenus N. amoenus (Thomas, 1900)
B. lactens A. (B.) lactens (includes
negrito orbus)
B. lactens (includes
negrito orbus)
N. lactens (includes
negrito orbus)
N. lactens (Thomas, 1918)
(includes negrito (Thomas,
1926), orbus (Thomas, 1919))
B. negrito
B. orbus
Zygodontomys lasiurus Z. lasiurus (includes fuscinus,
brachyurus, pixuna)
B. lasiurus (includes
arviculoides, brachyurus,fuscinus, lasiotis, pixuna)
N. lasiurus (includes
arviculoides, brachyurus,fuscinus, lasiotus,
orobinus, pixuna,
renggeri)
N. lasiurus (Lund, 1840)
(includes arviculoides(Wagner, 1842), benefactus
(Thomas, 1919), brachyurus
(Wagner, 1845), elioi
(Contreras, 1982), fuscinus(Thomas, 1897), lasiotus
(Lund, 1839), liciae
(Contreras, 1982),
orobinus (Wagner, 1842),
pixuna (Moojen, 1943),
renggeri (Pictet, 1844),
temchuki (Massoia, 1982))
A. arviculoides (includes
orobinus)
A. arviculoides (includes
orobinus, renggeri)
A. benefactus Included in A. obscurus Included in B. obscurus N. benefactus
B. temchuki (includes
elioi, liciae)
N. temchuki (includes
elioi, liciae)
Hesperomys brachyurus
Z. fuscinus
A. lenguarum Included in A. obscurus B. lenguarum (includes
tapirapoanus)N. lenguarum (includes
tapirapoanus)N. lenguarum (Thomas, 1898)
(includes tapirapoanus
(Allen, 1916))
Z. tapirapoanus A. tapirapoanusA. obscurus A. obscurus B. obscurus (includes
benefactus)
N. obscurus (includes
scagliarum)
N. obscurus (Watherhouse,
1837) (includes scagliarum
Galliari and Pardinas, 2000)B. innom. sp. (would
correspond to the later
scagliarum)
Z. punctulatus Z. punctulatus Not considered N. punctulatus N. punctulatus (Thomas, 1894)
A. (Chalcomys) urichi A. urichi (includes
chapmani, meridensis,
saturatus, venezuelensis)
A. urichi (includes
saturatus, venezuelensis)
N. urichi (includes
chapmani, meridensis,
saturatus, tobagensis,
venezuelensis)
N. urichi (Allen and Chapman,
1897) (includes chapmani(Allen, 1913), meridensis
(Allen, 1904), saturatus
(Tate, 1939), tobagensis(Goodwin, 1962),
venezuelensis (Allen, 1899))
A. (Ch.) chapmani
A. (Ch.) meridensisA. (Ch.) venezuelensis
a Some taxa are missing from Reig’s (1987) scheme because he only dealt with taxa he considered to be Akodontini; moreover, because his work was not a taxonomic catalogue he did
not mention all akodonts.
June 2008 779D’ELIA ET AL.—SYSTEMATICS OF NECROMYS (SIGMODONTINAE)
recognized that some species placed in Akodon and Zygodont-omys constituted a homogenous group distinct from the typical
morphotypes of both genera. However, Massoia and Fornes
(1967) failed to acknowledge that the species in consideration
also were associated with amoenus, type species of Bolomys,
which was available to contain those forms. Therefore, Reig
(1987) placed Cabreramys under the synonymy of Bolomys.
Massoia and Pardinas (1993) recognized that Necromysconifer�, a fossil form described by Ameghino (1889) from
the late Pleistocene of the Argentinean Buenos Aires Province
and type species of Necromys, is a synomym of B. benefactus.
Because Necromys has priority over Bolomys (and Cabrer-amys), this is the generic name currently used for the group of
akodontine mice herein studied. Further, Smith and Patton
(1993) expanded Necromys by showing that Akodon urichi,from northern South America, belonged to Necromys. This
hypothesis was later corroborated with broader taxonomic
(Smith and Patton 1999) and character (D’Elıa 2003) sampling.
Galliari and Pardinas (2000) suggested that Bolomys may be
retained to encompass the Andean species and Necromysrestricted to lowland forms. D’Elıa (2003) discussed this
hypothesis together with other classificatory alternatives,
favoring the broad definition of Necromys that is reflected in
current classifications (e.g., Musser and Carleton 2005). Today,
9 species are placed in Necromys (Musser and Carleton 2005).
Nevertheless, and despite the abundance of specimens in
museums of natural history, the alpha taxonomy of the genus
remains chaotic and species boundaries remain poorly un-
derstood. In part, this is because most revisionary works have
been conducted at local scales or within a single species
(Anderson and Olds 1989; Galliari and Pardinas 2000; Macedo
and Mares 1987; Oliveira 1992).
The goal of this study is to generate a phylogenetic
hypothesis for Necromys. This genealogy allows us to evaluate
the content of the genus and its species limits, and to pose
preliminary comments on its historical biogeography.
MATERIALS AND METHODS
Taxonomic sampling and sequence acquisition.—Animal
care and use procedures followed guidelines approved by the
American Society of Mammalogists (Gannon et al. 2007).
Genealogical analysis was based on the first 801 base pairs (bp)
of the cytochrome-b gene of 62 specimens of Necromysbelonging to 50 populations from Argentina, Bolivia, Brazil,
Colombia, Paraguay, Peru, Uruguay, and Venezuela (Fig. 1;
Appendix I). Specimens from which DNA sequences were
gathered belong to 8 of the 9 currently recognized species of
Necromys. We are missing representatives of N. punctulatus,
a species with uncertain geographic distribution in Ecuador
and Colombia. However, our taxonomic coverage is broad; it
includes specimens assignable to several of the nomimal forms
(e.g., Akodon fuscinus, Bolomys temchuki liciae, and Necromysobscurus scagliarum) currently considered synonyms of valid
species, as well as specimens collected at or near some type
localities of several forms (e.g., Akodon chapmani, A. fuscinus,
A. lactens, Cabreramys temchuki, Mus lasiurus, and N. ob-
scurus scagliarum). The phylogeny was rooted with haplotypes
of specimens of Akodon, Deltamys, Thalpomys, and Thap-tomys. Thalpomys is the sister genus of Necromys and all 5
genera constitute the Akodon division (sensu D’Elıa 2003) of
the tribe Akodontini. Sequences of 11 Necromys specimens
and those of the outgroups were obtained from Smith and
Patton (1991, 1999), Anderson and Yates (2000), D’Elıa
(2003), and D’Elıa et al. (2003). Cytochrome-b gene sequences
generated in this study were amplified and sequenced from
a single fragment using primers MVZ 05–MVZ 16 (da Silva
and Patton 1993) and the protocol detailed in D’Elıa and
Pardinas (2004). In all cases, both heavy and light DNA strands
were sequenced and compared. Sequences were visualized,
reconciled, and translated to proteins to proof for stop codons
using Sequence Navigator version 1.0.1 (Applied Biosystems,
Inc., Foster City, California) and SeqMan (DNASTAR 2003).
All sequences were deposited in GenBank (accession numbers
EF531643–EF531693).
Analyses.—Sequences were aligned with Clustal X
(Thompson et al. 1997) by using the default values for all
FIG. 1.—Map of collecting localities of the specimens of Necromysused in the present study. Locality numbers refer to Appendix I. The
type localities of the Necromys species considered valid in Musser and
Carleton (2005) also are shown. The exact type locality of N.punctulatus is not known and is here depicted with a question mark in
Ecuador, the country from which it is supposed to have come.
780 JOURNAL OF MAMMALOGY Vol. 89, No. 3
alignment parameters; no adjustment by eye was needed. Ob-
served percentage of sequence divergence was calculated with
PAUP* (Swofford 2000) ignoring those sites with missing
data. Aligned sequences were subjected to maximum parsimo-
ny (Farris 1982; Kluge and Farris 1969) and Bayesian
inference (reviewed in Huelsenbeck et al. 2001). Characters
used in maximum-parsimony analysis were treated as un-
ordered and equally weighted. PAUP* (Swofford 2000) was
used to perform 200 replicates of heuristic searches with
random addition of sequences and tree-bisection-reconnection
branch swapping. Two measures of clade support were cal-
culated. Because of computational time, Bremer support values
(BS—Bremer 1994) were computed for selected nodes in
PAUP* using command files written in TreeRot version 2
(Sorenson 1999) and with MAXTREE set to 10,000. One
thousand parsimony jackknife (JK—Farris et al. 1996) repli-
cations with 1 addition sequence replicate each, the deletion of
33% of the character data, and MAXTREE set to 1,000 were
performed using PAUP*. Branches with ,50% of support
were allowed to collapse. Bayesian analysis was conducted in
MrBayes 3.1 (Ronquist and Huelsenbeck 2003). Ten analyses
each consisting of 2 independent runs with 3 heated and 1
cold Markov chains each were performed. For each analysis,
a model with 6 categories of base substitution, a gamma-
distributed rate parameter, and a proportion of invariant sites
was specified; all model parameters were estimated in MrBayes.
Uniform interval priors were assumed for all parameters except
base composition and GTR parameters, which assumed
a Dirichlet process prior. Runs were allowed to proceed for 1,
1.5, 2, and 2.5 million generations; trees were sampled every
100 generations for each chain. To check that each run
converged on a stable log-likelihood value, we plotted the
log-likelihood values against generation time for each. The first
25% of the trees were discarded as burn-in and the remaining
trees were used to compute a 50% majority rule consensus tree
and obtain posterior probability (PP) estimates for each clade.
For N. amoenus, a hierarchical analysis of the distribution of
genetic diversity was conducted in the form of analyses of
molecular variance (AMOVA—Excoffier et al. 1992) using
Arlequin version 2.000 (Schneider et al. 2000). Hierarchical
levels were defined on the basis of sampling localities and
major clades found in the phylogenetic analysis. Similarly, for
the sample of N. lasiurus the neutrality tests of Tajima (1989)
and Fu (1997) were implemented in Arlequin.
RESULTS
The data set contained 348 variable sites, 69 of which
correspond to 1st codon positions, 45 to 2nd positions, and 234
to 3rd positions. Observed sequence divergence within and
between localities of the same species ranges from 0% to
3.87% (based on specimens 9 localities of N. amoenus, N.lasiurus, N. lenguarum, and N. obscurus) and 0% to 10.86%,
respectively. Values of comparisons between species pairs
range from 5.2% to 18.26%.
Of the 348 variable characters of the whole data set, 263 are
parsimony informative. The parsimony analysis of this data set
produced 22,107 shortest trees, each 982 steps long. Each tree
had an ensemble consistency index (CI) of 0.473 and a retention
index (RI) of 0.798. The strict consensus tree (Nelson 1979)
defined 44 nodes belonging to Necromys (Fig. 2), 10 of which
involved basal polytomies. At the base of the Necromys clade
are 3 lineages: a clade composed of N. urichi and N. amoenus(JK ¼ 54, BS ¼ 1); another clade formed by N. lactens (JK ¼100, BS ¼ 20); and a clade formed by all lowland species south
of Amazonia (JK ¼ 72, BS ¼ 1). Support for the clades
recovered in the strict consensus is highly variable. In the
jackknife analysis 3 nodes of the Necromys clade, involving
haplotypes of N. lasiurus, collapse at the cutoff of 50%.
Bremer support values for nodes of the Necromys clade range
from 1 to 22.
The Bayesian analyses produced 3 different topologies,
where the relationships among the groups of species varied. For
example, N. lactens alternates from being the sister group to the
remaining Necromys (PP for this later clade ¼ 0.50) in 1- and
2-million generation runs, to being the sister to the ‘‘southern
lowland’’ clade (PP for this relationship , 0.55) in 1-, 1.5-, and
2-million generation runs. In addition, in 2.5-million generation
runs Bayesian analysis recovered the same basal polytomy
found in the maximum-parsimony analysis. In light of these
results, we have chosen to discuss only the Bayesian topology
with the basal polytomy (Fig. 3). This tree shows a total of 12
intraspecific polytomies.
DISCUSSION
Necromys is a sigmodontine genus in great need of revision.
Problems range from nomenclatural issues, to species limits, to
the delimitation of the genus itself (Anderson and Olds 1989;
Galliari and Pardinas 2000; Reig 1987). Few recent studies
have tackled these issues. Galliari and Pardinas (2000) studied
the southern subtropical lowland species based on qualitative
and quantitative morphologic variation. Ventura et al. (2000)
used quantitative morphologic variation to assess the status of
different taxonomic forms of N. urichi. Provensal et al. (2005)
assessed the genetic and morphometric variation of 4 popu-
lations of N. benefactus. Thus, the present study is the 1st one
dealing with systematics of Necromys by analyzing most of the
recognized species with a broad geographic coverage and an
explicit genealogical approach based on variation of the
cytochrome-b gene. Maximum-parsimony analysis retrieved
22,107 shortest trees of 982 steps. Shortest trees have relatively
high consistency (0.473) and retention (0.798) indices. Their
strict consensus is a well-resolved cladogram, although clades
show a wide range of support (Fig. 2). Bayesian analysis (Fig.
3) retrieved a topology congruent for the most part with that of
the maximum-parsimony analysis. A few clades appearing in
the Bayesian consensus are collapsed in the parsimony
consensus; the reverse is also true with regards to a few
clades. Discrepancies between both topologies mostly involve
intraespecific relationships with low support in one or other
consensus tree. The following discussion is structured along
some of the main problems of Necromys systematics and on
clades recovered by our analyses.
June 2008 781D’ELIA ET AL.—SYSTEMATICS OF NECROMYS (SIGMODONTINAE)
The basal radiation of Necromys.—Necromys is recovered
as monophyletic in both analyses, although with deeply
different levels of support. In the maximum-parsimony anal-
ysis, Necromys received 53% of JK support, and only 1 extra
step is needed to collapse the clade and refute the hypothesis of
monophyly; on the contrary, in the Bayesian analysis a mono-
phyletic Necromys is strongly supported (PP ¼ 0.96). This
difference is notable, but not necessarily unexpected. Empirical
studies by Simmons et al. (2004) have shown that JK tends to
underestimate support values, that the Bayesian method con-
sistently overestimates support, and that both methods perform
poorly when the taxon sample is large but the character sample
is relatively limited. It is likely that the latter may explain our
disparate results, because we sequenced more than 60 animals,
but examined only a fragment of the cytochrome-b gene. In
addition, theoretical and simulation studies lack consensus on
the merit of using PP as a support measure in phylogenetics
(reviewed in Alfaro and Holder [2006]). In a maximum-
parsimony analysis of combined mitochondrial (complete
cytochrome-b) and nuclear sequences (759-bp fragment of
the 1st intron of the interphotoreceptor retinoid-binding protein
[IRBP] gene) with a broad sampling of sigmodontines, D’Elıa
FIG. 2.—Strict consensus tree of the 22,107 most-parsimonious trees (length 982, CI ¼ 0.473, RI ¼ 0.798) obtained in the maximum-
parsimony analysis of the cytochrome-b gene sequences. Numbers indicate parsimony jackknife (left of the diagonal; only values .50% are
shown) and Bremer support (right of the diagonal) values of the nodes to their right. If only a number appears it corresponds to the jackknife value.
A node without any number at its left implies that the node has less than 50% of jackknife support and that no Bremer support was calculated for
it. Numbers next to specimen identification refer to the locality where they were collected (see Fig. 1 and Appendix I). An asterisk (*) or a pound
symbol (#) indicates that before this study the specimen in question was assigned to Necromys benefactus or N. temchuki, respectively.
782 JOURNAL OF MAMMALOGY Vol. 89, No. 3
(2003) showed that monophyly of Necromys was strongly
supported (JK ¼ 99, BS ¼ 9). However, that study lacked
several species in the genus, including representatives of N.lactens, 1 of the 3 main lineages recovered in our analyses
above. Several studies (e.g., Galewski et al. 2006; Steppan
et al. 2005) have shown that the utility of mitochondrial
sequences declines rapidly with increasing phylogenetic depth.
Thus, until nuclear sequences for more species of Necromys are
available, it is difficult to reconcile the disparity between
support values in this study and those presented elsewhere.
Analyses reported in Figs. 2 and 3 found a polytomy at the
base of Necromys, composed of the following 3 lineages:
a clade composed of N. urichi and N. amoenus (JK ¼ 54, BS ¼1, PP ¼ 0.93); another formed by N. lactens (JK ¼ 100, BS ¼20, PP¼1.00); and a clade formed by all lowland species south
of Amazonia (JK ¼ 72, BS ¼ 1, PP ¼ 1.00). Considering this
polytomy, an alternative classification option is to recognize 3
genera: Necromys for the morphologically homogeneous
lowland forms; Bolomys for amoenus and urichi; and a 3rd
genus to encompass lactens. We do not agree with this
alternative for 2 reasons: phenotypic patterns of morphological
similarity show that N. lasiurus and N. lenguarum are more
similar to N. lactens than to N. obscurus (Galliari and Pardinas
2000), although in our analyses obscurus is shown to be a sister
FIG. 3.—Majority-rule consensus resulting from the Bayesian analysis of the cytochrome-b gene sequences. Numbers indicate posterior
probability values of the nodes at their right. Numbers next to specimen identification refer to the locality where they were collected (see Fig. 1 and
Appendix I). An asterisk (*) or a pound symbol (#) indicates that before this study the specimen in question was assigned to Necromys benefactusor N. temchuki, respectively.
June 2008 783D’ELIA ET AL.—SYSTEMATICS OF NECROMYS (SIGMODONTINAE)
to a clade formed by lasiurus and lenguarum; and the generic
diagnosis of Necromys (Anderson and Olds 1989) accommo-
dates the discrete levels of variation among the recognized
species, including amoenus. Given the data currently available,
we agree with the contents and limits of Necromys as currently
accepted (i.e., Musser and Carleton 2005). Nevertheless, this
hypothesis should be further tested with the inclusion of N.punctulatus and analysis of nuclear loci.
Necromys lactens as 1 of the 3 main lineages ofNecromys.—Necromys lactens (JK ¼ 100, BS ¼ 20, PP ¼1.00) represents a highly differentiated lineage within the
radiation of Necromys. It ranges from northwestern Argentina
to central Bolivia at elevations between 1,500 and 4,000 m.
This is a region with a complex topography and associated
biotic formations. In northern Argentina and southern Bolivia,
N. lactens occurs on high-altitude grasslands that develop
above the ‘‘sierras’’ (Jayat and Pacheco 2006). The sierras are
a complex of parallel-running hills of different heights and
extensions that replace themselves from east to west and north
to south. The grasslands of the sierras are separated from each
other by relatively large river valleys covered with arid or
semiarid habitats (e.g., Chaco, Monte, and Prepuna) and the
humid Yungas forest (Cabrera 1976).
We included haplotypes recovered from specimens collected
at or near the type localities of Akodon lactens Thomas, 1918
(JPJ 630), A. orbus Thomas, 1919 (JPJ 419), and Bolomysnegrito Thomas, 1926 (JPJ 447). Currently, the latter forms are
considered synonyms of N. lactens. Our results support this
taxonomy: these haplotypes appear closely related and the
percentage of divergence among them is around 2.0%.
Our sampling of N. lactens was not large enough to
constitute a phylogeographic analysis, but our results provide
a preliminary view on the geographic structure of this species.
We sequenced 7 specimens, each from a different locality in
Argentina, including 1 close to the type locality. All have
different haplotypes and genetic differences among them range
from 0.1% to 3.8%. Genetic variation within N. lactens is
geographically structured: a northern clade (JK ¼ 95, BS ¼ 2,
PP ¼ 0.93) is formed by 2 haplotypes from the north of Salta
Province; and a central-southern clade (JK ¼ 91, BS ¼ 2, PP ¼0.93) is represented by samples from Catamarca, Jujuy (south),
and Tucuman. Genetic divergence between clades ranges from
3.0% to 3.8%. Specimens from the northern clade were
collected on the western slopes of the Sierra de Santa Victoria,
near the Bolivian border, and Sierra de Zenta. These systems
are separated from the central and southern sierras by the
Grande River that runs along the Quebrada de Humahuaca.
Haplotypes within the central-southern clade also are geo-
graphically arranged. Those from the farthest south (Sierras de
Ambato, Ancasti, and Cumbres Calchaquies systems) form
a well-supported clade (JK ¼ 98, BS ¼ 3, PP ¼ 1.00) that in
the maximum-parsimony analysis is sister to a central clade
(JK ¼ 71, BS ¼ 2; Chani and Centinela systems).
Our results suggest that the phylogeography of N. lactenswas shaped by the history of high-altitude grasslands in the
central Andes and associated mountain systems. Today,
glaciers occupy some of the mountain ridges in the area (e.g.,
Nevados del Aconquija, Nevados del Chani, and Nevados de
Cachi) above 5,000 m. During the ice ages, glaciers in these
areas extended to 4,000 m, and even to 3,800 m in some places
(Halloy 1978; Rohmeder 1942). This must have lowered the
vegetation belts on mountain slopes and increased the extent of
vegetative zones at higher elevations. Under these conditions,
current patches of high-altitude grassland inhabited by N.lactens may have come into contact and allowed dispersal of
the species along the different sierras. This hypothesis is
supported by the discovery of a fossil community of Lujanian
Age (late Pleistocene) in which high-altitude grassland species
occur at a relatively low altitude (1,900 m). This reinforces the
idea that at least some members of present-day communities
were displaced to lower elevations in the Pleistocene (Ortiz
et al. 1998; see also Ortiz et al. 2000). In light of these results,
a broad phylogeographic analysis of N. lactens and other
grassland specialists (e.g., Phyllotis osilae—Jayat and Pacheco
2006) would be of much interest.
The clade of N. amoenus and N. urichi.—Necromysamoenus and N. urichi form a natural group in both analyses
but the group received strong support only in the Bayesian
analysis (PP ¼ 0.93). In a combined maximum-parsimony
analysis of mitochondrial and nuclear sequences that included
4 species of Necromys, N. amoenus and N. urichi formed
independent lineages in a polytomy at the base of the genus
(D’Elıa 2003). The N. amoenus-N. urichi clade has a large
distribution in the central and northern Andes, extending from
northwestern Argentina to Trinidad and Tobago, and including
the highlands of Bolivia, Colombia, and Peru, and lowlands of
Venezuela.
Based on geography, N. punctulatus—the only currently
recognized species of Necromys not included in our analyses—
may be part of or closely related to the N. amoenus-N. urichiclade, although we note that N. punctulatus is morphologically
indistinguishable from N. lasiurus (Voss 1991). The assumed
distribution of N. punctulatus is Ecuador and probably
Colombia (Musser and Carleton 2005), although several
attempts to obtain additional specimens of this species in the
last 15 years in various habitats in Ecuador have failed.
The last expansion of content in Necromys was proposed by
Smith and Patton (1999), who placed in it the form urichi. This
species ranges throughout the islands of Trinidad and Tobago,
but it also occurs in Colombia and Venezuela. The taxonomy
of N. urichi is presently unsettled. One of the main conflicts
centers on whether the form saturatus from Auyan-Tepui in
southern Venezuela represents a subspecies of N. urichi(Ventura et al. 2000) or a separate species (Linares 1998). At
least 2 other forms, meridensis and venezuelensis, are
considered valid subspecies (Ventura et al. 2000).
In our analyses, we used 4 specimens assigned to N. urichi: 2
from Venezuelan localities south of the Orinoco (1 geo-
graphically proximate to the type locality of saturatus), 1 from
the Caribbean coast of Venezuela (geographically proximate to
the type locality of venezuelensis), and 1 from the Andes of
Colombia (proximate to the type locality of chapmani). The
4 specimens have highly divergent haplotypes (genetic dis-
tances 3.6–9.0%) that formed a well-supported clade (JK ¼ 98,
784 JOURNAL OF MAMMALOGY Vol. 89, No. 3
BS ¼ 6, PP ¼ 1.00). Relationships among the 4 haplotypes are
fully resolved and highly supported in the maximum-
parsimony analysis (Fig. 2), although 1 of the clades collapses
in the Bayesian analysis (Fig. 3). Haplotypes from specimens
collected south of the Orinoco, which can be ascribed to
saturatus (Linares 1998; Ventura et al. 2000), do not form
a monophyletic group. In the maximum-parsimony analysis, 1
of these haplotypes from nearby San Ignacio de Yuruani falls
in a well-supported clade with a haplotype from the Caribbean
coast that represents venezuelensis (JK ¼ 96, BS ¼ 2). Both
localities are less than 1,000 m above sea level. Of the 4
haplotypes studied, these 2 are the most similar, showing 3.6%
divergence. However, this clade collapses in the Bayesian
analysis. The 2nd haplotype assignable to saturatus comes
from southern Venezuela (Cerro de la Neblina, near the
Brazilian border). This is the most divergent of all haplotypes
(genetic distances 8.1–9.0%) and is recovered as sister to the
remaining haplotypes of N. urichi (JK ¼ 96, BS ¼ 4, PP ¼0.99). These results cast doubt on the genealogical distinctness
of saturatus, at least as it is currently delimited (Ventura et al.
2000). The specimen from Cerro de la Neblina was collected at
2,100 m, an elevation similar to that of the type locality
(Auyan-Tepui) of saturatus. Perhaps venezuelensis ranges at
low elevations south and north of the Orinoco, with saturatusoccurring at higher altitudes. If so, venezuelensis, saturatus,
and chapmani (another highland form that appears sister to
venezuelensis) should be given equivalent rank (i.e., species or
subspecies). Regardless of the status of saturatus, our results
imply that the current geographic delimitation of this taxon is
erroneous and illustrate the need to reevaluate the status of
forms currently assigned to N. urichi. As currently defined, this
species may be a composite of .1 biological species.
However, any taxonomic changes at this point are premature.
Five specimens of N. amoenus were analyzed and a different
haplotype was recovered from each; the monophyly of the
species appears well supported in both analyses (JK ¼ 100, BS
¼ 10, PP ¼ 1.00). Interestingly, N. amoenus shows a deep
phylogeographical break between haplotypes recovered from
specimens collected in Cuzco and Puno, in southern Peru (JK
¼ 100, BS ¼ 8, PP ¼ 1.00) and those from Tarija in southern
Bolivia and Salta in northwestern Argentina (JK ¼ 100, BS ¼22, PP ¼ 1.00). Genetic divergence between these clades is
large, ranging from 7.75 to 10.9%. Moreover, an AMOVA
indicates that 88.1% of the genetic variation recovered in the
sample of N. amoenus is due to differences among the 2 main
clades. This suggests that N. amoenus as now understood may
be a composite of .1 biological species. To test this hypothesis
more individuals need to be analyzed, in particular from central
Bolivia, and a comprehensive morphological study undertaken.
A clade of species from the open lowlands south of theAmazon.—A large clade formed by haplotypes from all species
of Necromys from the lowlands south of Amazonia (i.e., N.benefactus, N. lasiurus, N. lenguarum, N. obscurus, and N.temchuki) was recovered with high support in both analyses
(JK ¼ 72, BS ¼ 1, PP ¼ 1.00). However, not all lowland
species were recovered as monophyletic. The 1st split within
the lowland clade separates individuals assigned to N. obscurus
from the remaining species (Figs. 2 and 3). This result
corroborates previous analyses of morphological variation
showing that N. obscurus is markedly different from the other
lowland species (Galliari and Pardinas 2000; Massoia and
Fornes 1967). Support for the monophyly of N. obscurus is
high (JK ¼ 100, BS ¼ 12, PP ¼ 1.00). Two subspecies with
disjunct distributions are currently recognized in N. obscurus.
The nominal form ranges along a narrow band of habitat
bordering the La Plata River and the Atlantic coast of Uruguay,
whereas N. o. scagliarum is known from only a few localities
centered on the Argentinean city of Mar del Plata (Galliari and
Pardinas 2000). In the maximum-parsimony analysis, N. o.scagliarum was recovered as monophyletic (JK ¼ 64), but in
the Bayesian analysis it was paraphyletic with respect to N. o.obscurus. Genetic distances among subspecies average 1.0%,
comparable to the distance among haplotypes of N. o.scagliarum (0.9%). In contrast, both specimens of N. o.obscurus, collected in localities about 80 km apart, share the
same haplotype. More specimens need to be analyzed to test
whether N. o. scagliarum has more genetic variation than N. o.obscurus or whether the observed pattern is caused by our
limited geographic sampling.
Our study also corroborates that at least 2 species of
Necromys inhabit the Chaco, one of the most poorly studied
ecoregions of South America. One of the species is N. lasiurus(JK ¼ 99, BS ¼ 7, PP ¼ 1.00), whose distribution encom-
passes a myriad of ecological regions. For convenience, the
2nd Chacoan species is here referred to as N. lenguarum (JK ¼100, BS ¼ 10, PP ¼ 1.00). This taxon is currently considered
a valid species, but at times it has been regarded as a synonym
of N. lasiurus (e.g., Macedo and Mares 1987). On average,
haplotypes of the 2 species differ by 5.4% (range 5.2–8.1%)
and the monophyly of each species is strongly supported (Figs.
2 and 3). N. lenguarum occurs in the Chaco of Bolivia and
Paraguay, and possibly in the Argentinean Chaco as well
(Galliari et al. 1996; J. P. Jayat, in litt.). Our assignment of the
eastern Bolivian and Paraguayan specimens (TK 62259) to N.lenguarum must be regarded with caution for the following
reasons: the validity of N. lenguarum was not properly tested
because we failed to analyze topotype specimens from
Waikthlatingwaialwa; the validity of tapirapoanus, a taxon
currently synonymized under N. lenguarum, was not tested,
although the type locality of this taxon is less than 400 km from
eastern Bolivia (localities 37 and 41); specimens of Necromyscollected in the general area of Waikthlatingwaialwa (localities
34 and 35) are all referable to N. lasiurus; and our only
specimen referable to lenguarum from Paraguay comes from
Laguna Placenta and has yet to be compared with the holotype
of lenguarum. Until these issues are resolved, the taxonomic
status of N. lenguarum will remain elusive. However, our
analyses confirm the identity of an additional species of
Necromys in the Chaco region.
Necromys lasiurus as a senior synonym to N. benefactus andN. temchuki.—One of the most relevant results of our study is
that N. lasiurus, a broadly distributed species, appears para-
phyletic with respect to 2 southern species, N. benefactus and
N. temchuki. Haplotypes of N. benefactus do not form
June 2008 785D’ELIA ET AL.—SYSTEMATICS OF NECROMYS (SIGMODONTINAE)
a monophyletic group, being related to different haplotypes of
N. lasiurus. Haplotypes of N. temchuki sensu stricto, which
come from 3 geographically proximate localities (including the
type locality) in Misiones, Argentina, are very similar to each
other and form a well-supported clade (JK¼ 96, PP¼ 1.00). The
haplotype assignable to N. t. liciae is not sister to the N. t.temchuki clade.
The lack of monophyly for N. benefactus, N. lasiurus, and N.temchuki may simply reflect a disagreement between the inferred
gene tree and the species tree. Random fixation of alternative
haplotypes via lineage sorting may result in a pattern like the one
presented here (Neigel and Avise 1986). This also may be a case
of introgression via hybridization of the mitochondrial genome
of 1 species into the nuclear background of a 2nd (e.g., Patton and
Smith 1994). Currently, however, there is no reason to assume
that the recovered gene tree does not reflect the species tree. We
support this assertion on 2 lines of reasoning. First, there is no
alternative data set amenable to comparison with the mitochon-
drial tree presented here; that is, no other Necromys data set has
been analyzed with an explicit historical approach that suggests
that the mitochondrial tree departs from the species tree. There-
fore, the gene tree should be accepted as the best available hypoth-
esis of taxonomic relationships (Brower et al. 1996). Second, the
3 species are phenotypically very similar and no discrete
morphological groups can be delimited (Galliari and Pardinas
2000; Macedo and Mares 1987; G. D’Elıa et al., in litt.); similarly,
cytogenetic evidence shows that N. lasiurus and N. temchukihave the same chromosome number and morphology as well as
the same C- and G-banding patterns (Vitullo et al. 1986).
The phenotypic similarity of N. temchuki, a poorly described
species of northwestern Argentina, to N. lasiurus was already
noted by several authors, some of which questioned its specific
identity (e.g., Galliari et al. 1996). Taken at face value, our
results suggest that N. benefactus, N. lasiurus, and N. temchukirepresent a single biological species. Therefore, we formally
synonymyze N. benefactus and N. temchuki under N. lasiurus,
the oldest available name for this clade. Thus, the type species
of Necromys, the fossil form N. conifer, is hereby also relegated
to a junior synonym of N. lasiurus.
As here understood, N. lasiurus has one of the largest
distributions within the Sigmodontinae. Geographic limits are
not totally clear, but we have specimens assigned to this species
from the Ilha do Arapiranga in the Brazilian state of Para
(approximately 18199S), from southern Buenos Aires Province
(38.78S), from close to the Brazilian Atlantic coast, and from
the Sierra de Ambato on the Argentinean Andes. Although our
sampling of N. lasiurus is extensive (33 specimens and 25
populations), large areas (especially central Brazil) within these
limits are not represented in our analyses, and many others are
represented by singletons. Nevertheless, a preliminary picture
of geographic structure and demographic history of N. lasiuruscan now be articulated.
Observed divergence ranges from 0% to 3.9% and from
1.3% to 6.3% at the intra- and interpopulation level, respec-
tively. These are large values, and the last one is larger than
some values corresponding to comparisons between haplotypes
of N. lenguarum and N. lasiurus (range 5.2–8.1%); however,
these species’ reciprocal monophyly is strongly supported
(Figs. 2 and 3). Within lasiurus we note 2 clades, 1 composed
of 4 specimens from localities as far from each other as the Ilha
do Arapiranga (in the Brazilian state of Para) and 2 Paraguayan
localities, and another that includes the remaining individuals
sampled including 1 specimen from the type locality for
lasiurus (Lagoa Santa, Minas Gerais, Brazil). Observed
divergence between haplotypes from both clades ranges from
3.2% to 6.3%. Support for both clades is weak: JK ¼ 62, BS ¼1, PP ¼ 0.67 and JK ¼ 84, BS ¼ 4, PP ¼ 0.66, respectively.
Remarkably, despite its large geographic distribution, N.lasiurus does not show significant phylogeographic structure;
for example, the 2 main clades of N. lasiurus overlap in
Paraguay, whereas different haplotypes recovered in 1 collect-
ing locality at Serranıas de San Luis National Park (locality
32), fall into the 2 main clades of N. lasiurus. Several other
examples of this lack of phylogeographic structuring are
evident.
When all haplotypes of N. lasiurus are analyzed together,
both Tajima’s (1989) and Fu’s (1997) tests of neutrality
provide negative and significant values (D ¼ �1.59, P ¼ 0.03;
Fs ¼ �12.20, P ¼ 0.002), indicating that N. lasiurus may have
recently experienced an increase in population size. In
combination with the lack of phylogeographic structure, these
results appear to indicate that N. lasiurus has recently invaded
several regions of the current distributional range. In addition,
given the relatively large observed genetic divergence (up to
6.3%) between some pairs of haplotypes of N. lasiurus, it is
tempting to suggest that the presumptive range expansion
occurred either from a past population that was both large and
stable or from .1 population. The fossil record of N. lasiurusshows that in the course of a few hundred years the
distributional range of this species has shifted markedly
(Galliari and Pardinas 2000; Pardinas 1999). This type of
dynamic scenario may produce the lack of equilibrium between
genetic drift and gene flow that we observe in N. lasiurus.
Further tests of these hypotheses require the analyses of more
individuals and of a locus not linked to the cytochrome-b gene.
A better understanding of the history of tropical and subtropical
open areas of South America is needed to compose a detailed
scenario for the dynamic of N. lasiurus.
The geographic origin of Necromys.—Necromys, in spite of
its moderate specific diversity, is among the most widely
distributed genera within the sigmodontine radiation. Its
geographic distribution encompasses large expanses of open
environments both south and north of the Amazon basin. In
terms of its general distribution, Necromys resembles the rodent
genus Calomys (contra Almeida et al. 2007:460); the main
difference between them is that the latter reaches Patagonia in
southern South America, whereas Necromys has a larger
Andean distribution.
Despite their similar geographic distributions, it appears that
Calomys and Necromys have differerent biogeographic
histories. The main difference involves the reciprocal mono-
phyly of the groups of lowland and highland species of
Calomys (although a lowland clade was not recovered in the
maximum-parsimony analysis of Almeida et al. [2007]). This
786 JOURNAL OF MAMMALOGY Vol. 89, No. 3
implies a single split between lowland and Andean species,
probably mediated by the uplift of the Andes. Lowland species
of Calomys south and north of the Amazonia would have
differentiated after the Amazonian forest expanded (Almeida
et al. 2007; Salazar-Bravo et al. 2001). We can rule out
a similar scenario for Necromys because N. urichi from the
South American grasslands north of the Amazon is not sister to
species from the southern lowlands (Figs. 2 and 3). In fact, N.urichi is most closely related to N. amoenus, and, therefore, we
can rule out a single split between lowland and highland
species in Necromys. Incorporation of N. punctulatus in future
analyses may require a revision of this interpretation.
The oldest known Necromys corresponds to N. bonapartei�from late Pliocene sediments (approximately 4–3.5 million
years ago) from southern Buenos Aires Province, Argentina
(Pardinas and Tonni 1998). From slightly younger beds of the
same area Reig (1978) described Dankomys�, an extinct genus
morphologically resembling Necromys. To date, there is no
a formal phylogenetic analysis involving Dankomys�, but if
Dankomys� and Necromys are closely related, it would imply
a Pampean radiation of Necromys-like sigmodontines in the
late Pliocene, which in turn may suggest a Pampean origin for
Necromys (see Pardinas 1995). However, we note that a clade
of southern lowland species sister to the remaining species of
Necromys was never recovered in our analyses. In addition, we
note that none of our analyses recovered a southern clade that
was paraphyletic with respect to the highland species, as the
hypothesis of a southern origin for Necromys would predict.
Clearly, additional studies are needed to assess the historical
biogeography of Necromys. The discoveries of new fossils that
constitute conclusive evidence of the presence of a taxon in
a specific geologic time and place would be key evidence. In
addition, and as a 1st step toward the clarification of the place
of the origin of Necromys, a fully resolved and well-supported
topology at the base of the Necromys clade is much needed.
RESUMEN
Presentamos el estudio mas amplio a la fecha sobre la
sistematica de Necromys, un genero de roedores distribuido en
las areas abiertas al norte y sur de la Amazonıa y en los
pastizales andinos. El estudio esta basado en secuencias del gen
que codifica para el citocromo b; las mismas fueron analizadas
mediante analisis de maxima parsimonia y bayesiano. Los
analisis se efectuaron sobre secuencias de 62 especimenes de 51
localidades de Argentina, Bolivia, Brasil, Colombia, Paraguay,
Peru, Uruguay y Venezuela. Excepto una, las restantes especies
actualmente consideradas como integrantes del genero estan
representadas en el estudio. Necromys fue recobrado monofiletico
con una politomıa basal que involucra a 3 linajes. Uno de estos
linajes esta formado por la especie andina N. lactens, que ademas
presento una marcada estructura filogeografica. El segundo clado
esta formado por N. urichi de los pastizales del norte de America
del Sur y N. amoenus de los Andes centrales. Los resultados
sugieren que cada uno de estos taxones podrıa estar constituido
por mas de una especie biologica. El tercer clado esta formado
por las especies de las tierras bajas al sur de la Amazonıa. Dentro
de este clado, N. obscurus es hermana de las restantes especies.
Los haplotipos recobrados en especimenes asignados a N.benefactus, N. temchuki y N. lasiurus forman un clado, pero
estos taxones no forman grupos recıprocamente monofileticos ni
el clado muestra estructura geografica. Estos resultados genea-
logicos, discutidos en el contexto de la variacion genetica, son la
base de consideraciones taxonomicas (e.g., N. benefactus y N.temchuki son considerados sinonimos subjetivos de N. lasiurus) y
biogeograficas.
ACKNOWLEDGMENTS
We acknowledge the following institutions for access to tissues and
specimens: Museum of Vertebrate Zoology (Berkeley, J. Patton),
Museum of Texas Tech University (Lubbock, R. J. Baker, R. Owen,
and H. Garner), National Museum of Natural History (Washington,
D.C., L. Emmons), University of New Mexico’s Division of Genetic
Resources, Museum of Southwestern Biology (Albuquerque, T. Yates
and C. Parmenter), Division de Mastozoologıa, Coleccion Boliviana
de Fauna (La Paz, J. Vargas), Museum National d’Histoire Naturelle
(Paris, M. Tranier), and Natural History Museum (London, P.
Jenkins). Additional tissue samples were provided by L. Geise, E.
Hingst-Zaher, D. Birochio, R. Gonzalez Ittig, and J. Marinho. We
thank R. Monk (American Museum of Natural History, New York) for
providing photos of the holotype of A. urichi and R. Harbord and
P. Jenkis for providing photos of the holotypes of A. orbus and
B. negrito. Two anonymous reviewers made valuable comments on an
earlier version of this study. Financial support was provided by the
Direccion de Investigacion de la Universidad de Concepcion (DIUC
206.113.073-1.0) to GD, Consejo Nacional de Investigaciones
Cientıficas y Tecnicas (CONICET) to UFJP, National Science
Foundation (INT-9417252) and Faculty Research Award from Texas
Tech University to JSB, and Fundacion ProYungas to JPJ.
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APPENDIX IThe specimens of Necromys, Akodon, Deltamys, Thalpomys, and
Thaptomys used in the present study are listed here. Accession
numbers are indicated for those specimens whose sequences were
retrieved from GenBank. See Fig. 1 for locality numbers and locations
of sites. Museum and collection acronyms and personal field numbers
are as follows. Argentina: Coleccion de Mamıferos del Centro
Nacional Patagonico, Puerto Madryn (CNP); Museo de Ciencias
Naturales y Tradicional de Mar del Plata, Mar del Plata (MMP); field
number of J. Pablo Jayat (JPJ, vouchers will be deposited in Coleccion
Mamıferos Lillo, Tucuman). Bolivia: VCC field number of Veronica
Chavez (VCC, vouchers will be deposited in Museo de Historia
Natural Noel Kempff Mercado, Santa Cruz). Brazil: Museu Nacional,
Rio do Janeiro (MN); field number of Lena Geise and field crew (CD,
voucher will be deposited at the Museu de Zoologia Universidade de
Sao Paulo, Brazil), MZUSP; field and laboratory numbers obtained
from Erika Hingst-Zaher (BlasLS052III, IA to be deposited at the
Museu Nacional, Brazil); field number of Jorge Marinho (JR, voucher
will be deposited at Colecao Zoologica da Universidade Regional de
Blumenau, Brazil). France: Museum National d’Histoire Naturelle,
Paris (MNHN). United Kingdom: The Natural History Museum,
London (BMNH). United States: American Museum of Natural
History, New York (AMNH); Museum of Southwestern Biology,
Albuquerque (MSB and NK: tissue accession prefix); Museum of
Vertebrate Zoology, University of California, Berkeley (MVZ); The
Museum, Texas Tech University, Lubbock (TK: tissue accession
prefix); University of Michigan Museum of Zoology, Ann Arbor
(UMMZ); National Museum of Natural History, Washington, D.C.
(USNM). Uruguay: field number of Guillermo D’Elıa (GD, vouchers
will be deposited at Museo Nacional de Historia Natural y
Antropologıa, Montevideo); field numbers of the Seccion Evolucion,
Facultad de Ciencias, Universidad de la Republica (EV, vouchers will
be deposited at Nacional de Historia Natural y Antropologıa,
Montevideo). An asterisk (*) or a pound symbol (#) indicates that
before this study the specimen in question was assigned to N.benefactus or N. temchuki, respectively; both taxa are here regarded as
junior synonyms of N. lasiurus. gb indicates that the sequence was
retrieved from GenBank; all others were generated in this study.
Necromys amoenus.—ARGENTINA: 1) Salta, Santa Victoria, 1
km ENE de Rodeo Pampa, km 59 de Ruta Provincial No. 7, 3,080 m,
22814947.70S, 658394.30W (JPJ 1318: EF531643). BOLIVIA: 2)
June 2008 789D’ELIA ET AL.—SYSTEMATICS OF NECROMYS (SIGMODONTINAE)
Tarija, Serrania del Sama, 3,200 m, 218279S, 648529W (MSB 67194:
AF159283 gb). PERU: 3) Cuzco, 20 km N (by road) Paucartambo, km
100, 3,580 m, 1381299.70S, 7084090.00W (MVZ 171563: AY273911
gb). 4) Puno, 12 km S Santa Rosa, 3,960 m, 1484399.40S, 7084798.90W
(MVZ 172878: M35711 gb; MVZ 172879: M35712 gb).
Necromys lactens.—ARGENTINA: 5) Catamarca, Ambato, Las
Chacritas, aprox. 28 km al NNW de Singuil, sobre Ruta Provincial No.
1, 1,888 m, 27842924.20S, 65854940.60W (JPJ 552: EF531646); 6)
Catamarca, Valle Viejo, aprox. 2 km al SE de Huaico Hondo, sobre
Ruta Provincial No. 42, al E del Portezuelo, 1,992 m, 28825910.90S,
65832940.50W (JPJ 419: EF531644); 7) Jujuy, Santa Barbara, La
Antena, Sierra del Centinela, al S de El Fuerte, 2,350 m,
24817956.460S, 6482399.30W (JPJ 953: EF531649); 8) Jujuy, Tum-
baya, Barcena, aprox. 3 km al S, sobre Ruta Nacional No. 9, 1,808 m,
2480920S, 65826951.60W (JPJ 630: EF531647); 9) Salta, Oran, Abra de
Cienaga Negra, aprox. 3 km al SE, 3,090 m, 238199490S, 648539320W
(JPJ 721: EF531648); 10) Salta, Santa Victoria, 1 km ENE de Rodeo
Pampa, km 59 de Ruta Provincial No. 7, 3,080 m, 22814947.70S,
658394.30W (JPJ 1315: EF531650); 11) Tucuman, Trancas, aprox. 10
km al S de Hualinchay, sobre el camino a Lara, 2,300 m,
26819920.20S, 65836945.50W (JPJ 447: EF531645).
Necromys lasiurus.—ARGENTINA: 12) Buenos Aires, Bahıa
Blanca, Bahıa Blanca, 388439S, 628169W (CNP 519*: EF531654;
CNP 520*: EF531655); 13) Buenos Aires, Campamento Base del
Cerro Ventana, 388049S, 628019W (BM 79.1665*: EF531651; CNP
472*: EF531652); 14) Buenos Aires, San Mateo, 388399340S,
60859930.60W (CNP 473*: EF531653); 5) Catamarca, Ambato, Las
Chacritas, aprox. 28 km al NNW de Singuil, sobre Ruta Provincial
No. 1, 1,888 m, 27842924.20S, 65854940.60W (JPJ 530: EF531661);
15) Formosa, 17 km W-SW de Colonia Mayor Villafane, 268129570S,
598159380W (CNP 533#: AY273913 gb); 16) Misiones, Estancia
Santa Ines, 278319320S, 558529190W (CNP 534#: EF531658; CNP
535#: AY273914 gb); 17) Misiones, Leandro N. Alem, 278369S,
558199W (CNP 795#: EF531659); 18) Misiones, Santa Ana, 278239S,
558359W (CNP 801#: EF531660); 19) Santa Fe, Berna, 298169S,
598529W (CNP 531*: EF531656; CNP 532*: EF531657). BRASIL:
20) Bahia, Lencois, Chapada Diamantina, Remanso, 509 m,
12836941.50S, 41821950.90W (CD 21: EF531689); 21) Bahia, Mucuge,
Parque Nacional da Chapada Diamantina, Rio Cumbuca, 1,002 m,
13829410S, 418209580W (MN 69862: EF531693); 22) Minas Gerais,
Caratinga, Fazenda Montes Claros, 198509S, 418509W (MN 48052:
EF531690); 23) Minas Gerais, Lagoa Santa, 198399S, 438549W
(LS052III: EF531688); 24) Para, Ilha de Arapiranga, 0 m, 18209S,
488349W (IA01: EF531691; IA042: EF531692); 25) Rio Grande do
Sul, Rondinha, Parque Estadual Florestal de Rondinha, 28844919.740S,
50816940.570W (JR 346: EF531662); 26) Sao Paulo, Tupi Paulista,
218229S, 518369W (NK 42164: EF531663). PARAGUAY: 27) Alto
Paraguay, Palmar de Las Islas, 19837947.30S, 608369450W (TK 65362:
EF531673); 28) Amambay: Bella Vista, Colonia Sargento Dure, 3 km E
by road of Rio Apa, 228109S, 56825915.240W (NK 27506: EF531664;
NK 27519: EF531665); 29) Canindeyu, Reserva Natural del Bosque
Mbaracayu, 24808.939S, 558189W (TK 61813: EF531666); 30)
Canindeyu, Reserva Natural del Bosque Mbaracayu, 24809.619S,
55816.999W (TK 63980: EF531668; TK 63982: EF531669); 31)
Canindeyu, Reserva Natural Privada Itabo, 24827.689S, 54838.339W
(TK 63511: EF531667); 32) Concepcion, Parque Nacional Serranıa de
San Luis, 22835.959S, 57821.289W (TK 64242: EF531670; TK 64268:
EF531671); 33) Concepcion, Parque Nacional Serranıa de San Luis,
22840.969S, 57821.529W (TK 64302: AY273912 gb); 34) Presidente
Hayes, 8 km NE Juan de Zalazar, 2386900S, 59818900W (UMMZ
134431: U03528 gb); 35) Presidente Hayes, Estancia Loma Pora,
2383295.30S, 57833938.30W (TK 64472: EF531672).
Necromys lenguarum.—BOLIVIA: 36) Chuquisaca, Rıo Limon,
1,300 m, 198329510S, 64847958.50W (NK 21680: EF531677); 37)
Santa Cruz, Velasco, Parque Nacional Noel Kempff Mercado,
Campamento Los Fierros, 215 m, 148339400S, 608559400W (VCC
113: EF531680; USNM 584530: EF531679); 38) Santa Cruz, Estancia
San Marcos, 6 km W Ascencion, approx. 400 m, 15853911.40S,
63811910.390W (NK 102253: EF531678); 39) Santa Cruz, 6 km N
Buen Retiro, 300 m, 17812950.90S, 63837958.40W (NK 12151:
EF531674); 40) Santa Cruz, 4.5 km N, 1.5 km E Cerro Amboro,
Rio Pitisama, 620 m, 178449S, 638409W (NK 14011: EF531676); 41)
Santa Cruz, 4 km N, 1 km W of Santiago de Chiquitos, 700 m,
188179510S, 59835958.130W (NK12315: EF531675). PARAGUAY:
42) Alto Paraguay, Laguna Placenta, 70 m, 2188937.10S, 59824951.50W
(TK 62259: EF531681).
Necromys obscurus.—ARGENTINA: 43) Buenos Aires, 1 km
aguas arriba puente sobre RP 11, arroyo de las Brusquitas,
388149080S, 578469520W (CNP 891: EF531684; CNP 892:
EF531685); 44) Buenos Aires, Mar del Plata, 0 m, 388009S,
578339W (MMP 4008: EF531686). URUGUAY: 45) Montevideo,
Parque Lecoq, 34848.1219S, W 56820.4609W (GD 754: EF531683);
46) San Jose, Estancia El Relincho, 348209S, 568599W (EV 1028:
EF531682).
Necromys urichi.—COLOMBIA: 47) Paramo de Choachi, alrede-
dores de Bogota, 48339N, 738409W (MNHN 2880: EF531687).
VENEZUELA: 48) Amazonas, Cerro Neblina, 0851924.170N,
65857913.570W (USNM 560661: U03549 gb); 49) Bolivar, 5.2 km
NE San Ignacio Yuruani (AMNH 257281: AY273918 gb); 50) Sucre,
Finca Vuelta Larga, 9.7 km (by road) SE Guaraunos, 10827959.780N,
63859510W (AMNH 257287: AY273919 gb).
Akodon boliviensis.—PERU: Puno, 12 km S Santa Rosa [De
Ayaviri]; elevation 3,950 m (MVZ 171607: M35691 gb).
Deltamys kempi.—ARGENTINA: Buenos Aires, La Balandra,
348549070S, 578459560W (CNP 893: AY 195861 gb).
Thalpomys cerradensis.—BRAZIL: Piauı, Estacao Ecologica de
Urucui-Una (MZUSP 30400: AY273915 gb).
Thaptomys nigrita.—BRAZIL: Sao Paulo, Salesopolis; Estacao
Biologica de Boraceia, 3 km E, 28 km SE Biritiba-Mirim, 850 m
(MVZ 1830 44: AF108666 gb).
790 JOURNAL OF MAMMALOGY Vol. 89, No. 3