Somatic mosaicism in a case of apparently sporadic Creutzfeldt-Jakob disease carrying a de novo...

33
For Peer Review Somatic mosaicism in a case of apparently sporadic Creutzfeldt-Jakob disease carrying a de novo D178N mutation in the PRNP gene Journal: American Journal of Medical Genetics Part B: Neuropsychiatric Genetics Manuscript ID: NPG-09-0272.R1 Wiley - Manuscript type: Research Article Date Submitted by the Author: Complete List of Authors: Alzualde, Ainhoa; BioDonostia Institute Moreno, Fermin; Hospital Donostia - Osakidetza, Neurology; CIBERNED Martinez-Lage, Pablo; Fundacion ACE Ferrer, Isidre; IDIBELL-Hospital Universitari de Bellvitge, Anatomical Pathology; CIBERNED Gorostidi, Ana; BioDonostia Institute, Neurosciences; CIBERNED Otaegui, David; BioDonostia Institute, Neurosciences Blazquez, Lorea; BioDonostia Institute, Neurosciences; CIBERNED Atares, Begoña; Hospital Txagorritxu - Osakidetza, Anatomical Pathology Cardoso, Sergio; University of the Basque Country, DNA Bank Martinez de Pancorbo, Marian; University of the Basque Country, DNA Bank Juste, Ramon; NEIKER-Tecnalia, Animal Health Rodriguez-Martinez, Ana Belen; NEIKER-Tecnalia, Animal Health Indakoetxea, Begoña; Hospital Donostia, Neurology; CIBERNED Lopez de Munain, Adolfo; Hospital Donostia - Osakidetza, Neurology; CIBERNED Keywords: prion protein, de novo mutation, sporadic CJD, genetic counseling John Wiley & Sons, Inc. American Journal of Medical Genetics Part B: Neuropsychiatric Genetics

Transcript of Somatic mosaicism in a case of apparently sporadic Creutzfeldt-Jakob disease carrying a de novo...

For Peer Review

Somatic mosaicism in a case of apparently sporadic Creutzfeldt-Jakob disease carrying a de novo D178N

mutation in the PRNP gene

Journal: American Journal of Medical Genetics Part B: Neuropsychiatric

Genetics

Manuscript ID: NPG-09-0272.R1

Wiley - Manuscript type: Research Article

Date Submitted by the Author:

Complete List of Authors: Alzualde, Ainhoa; BioDonostia Institute Moreno, Fermin; Hospital Donostia - Osakidetza, Neurology; CIBERNED Martinez-Lage, Pablo; Fundacion ACE Ferrer, Isidre; IDIBELL-Hospital Universitari de Bellvitge, Anatomical Pathology; CIBERNED Gorostidi, Ana; BioDonostia Institute, Neurosciences; CIBERNED Otaegui, David; BioDonostia Institute, Neurosciences Blazquez, Lorea; BioDonostia Institute, Neurosciences; CIBERNED Atares, Begoña; Hospital Txagorritxu - Osakidetza, Anatomical Pathology Cardoso, Sergio; University of the Basque Country, DNA Bank Martinez de Pancorbo, Marian; University of the Basque Country, DNA Bank Juste, Ramon; NEIKER-Tecnalia, Animal Health Rodriguez-Martinez, Ana Belen; NEIKER-Tecnalia, Animal Health Indakoetxea, Begoña; Hospital Donostia, Neurology; CIBERNED Lopez de Munain, Adolfo; Hospital Donostia - Osakidetza, Neurology; CIBERNED

Keywords: prion protein, de novo mutation, sporadic CJD, genetic counseling

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Somatic mosaicism in a case of apparently sporadic Creutzfeldt-Jakob disease

carrying a de novo D178N mutation in the PRNP gene.

Running head title: PRNP somatic mosaicism in an apparently sCJD

A. Alzualde1,7*

, F. Moreno 2,7*

, P. Martinez-Lage3, I. Ferrer

8,7, A. Gorostidi

1,7, D.

Otaegui 1

, L. Blázquez 1,7

, B. Atares, 4

S. Cardoso,5

M. Martínez de Pancorbo, 5

R. Juste

6, A.B. Rodríguez-Martínez

6, B. Indakoetxea

2,7, A. Lopez de Munain

1,2,7.

* Both authors contributed equally

Corresponding author:

Ainhoa Alzualde PhD

Ilundain Fundazioa- Instituto Biodonostia

Unidad Experimental, Edificio materno-infantil,-3 azul, Hospital Donostia,

Pº Dr. Beguiristain s/n, 20014, San Sebastián, Spain

e-mail: [email protected]

Telephone number: +34 943007061; Fax number: +34 943007061

1 Unidad Neurociencias, Instituto de Investigación Biodonostia, San Sebastián, Spain

2 Servicio de Neurología, Hospital Donostia, Osakidetza, San Sebastián, Spain

3Fundación ACE, Barcelona, Spain

4 Servicio de Anatomía Patológica, Hospital de Txagorritxu, Osakidetza, Vitoria, Spain

5 Departamento de Zoología y Dinámica Celular, Facultad de Farmacia, Banco de ADN,

Universidad del País Vasco- Euskal Herriko Unibertsitatea, Vitoria-Gasteiz, Spain

6Instituto Vasco de Investigación y Desarrollo Agrario, NEIKER, Derio, Spain

7CIBERNED (Centro de Investigación Biomédica en Red de Enfermedades

Neurodegenerativas), Instituto de Salud Carlos III, Spain

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8Institut de Neuropatologia, Servei Anatomia Patològica, IDIBELL-Hospital

Universitari de Bellvitge, Universitat de Barcelona, Hospitalet de LLobregat, Spain

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ABSTRACT

Transmissible spongiform encephalopathies (TSEs) are a group of rare fatal

neurodegenerative disorders. Creutzfeldt-Jakob disease (CJD) represents the most

common form of TSE and can be classified into sporadic, genetic, iatrogenic and variant

forms. Genetic cases are related to prion protein gene mutations but they only account

for 10-20% of cases. Here we report an apparently sporadic CJD case with negative

family history carrying a mutation at codon 178 of prion protein gene. This mutation is

a de novo mutation as the parents of the case do not show it. Furthermore the presence

of three different alleles (wild type 129M-178D and 129V-178D and mutated 129V-

178N), confirmed by different methods, indicates that this de novo mutation is a post-

zygotic mutation that produces somatic mosaicism. The proportion of mutated cells in

peripheral blood cells and in brain tissue was similar and was estimated at

approximately 97%, suggesting that the mutation occurred at an early stage of

embryogenesis. Neuropathological examination disclosed spongiform change mainly

involving the caudate and putamen, and the cerebral cortex, together with proteinase K-

resistant PrP globular deposits in the cerebrum and cerebellum. PrP typing was

characterized by a lower band of 21 kDa. This is the first case of mosaicism described

in prion diseases and illustrates a potential etiology for apparently sporadic

neurodegenerative diseases. In light of this case, genetic counseling for inherited and

sporadic forms of transmissible encephalopathies should take into account this

possibility for genetic screening procedures.

Keywords: sporadic CJD; prion protein; de novo mutation; genetic counseling

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INTRODUCTION

Transmissible spongiform encephalopathies (TSEs), also known as prion diseases,

comprise a group of rare fatal neurodegenerative disorders characterized by the

accumulation of a pathological isoform of the cellular prion protein (PrPC), called PrP

Sc

(PrP scrapie), generated by post-translational modification of PrPC (Prusiner ,1991).

Scrapie and bovine spongiform encephalopathy are the most frequent prion diseases in

sheep and cattle, respectively (Dearmond and Prusiner ,1995). Creutzfeldt-Jakob disease

(CJD) is the most common human TSE and may occur as sporadic (sCJD), genetic

(gCJD) and iatrogenic (iCJD) diseases (Budka et al., 2003; Ironside et al., 2008;

Ironside and Head ,2008; Ricketts and Pergami ,2003). Another form, the new variant

of CJD (vCJD), is caused by the transmission of the bovine spongiform encephalopathy

to humans (Ironside et al., 2003). Sporadic CJD accounts for 80 to 90% of all cases,

with an estimated incidence of 1-1.5 per million and year (Budka et al., 2003).

Genetic CJD is associated with various mutations within the human prion protein gene

(PRNP) (Dearmond and Prusiner ,1995; Parchi and Gambetti ,1995). One of the most

frequent mutations is located at codon 178 (Kovacs et al., 2005) and consists of an A →

G transition that results in an amino acid change from aspartic acid to asparagine. The

D178N point mutation is linked to two distinct phenotypes: Fatal Familial Insomnia

(FFI) which is associated with methionine at codon 129, and genetic Creutzfeldt-Jakob

disease D178N (gCJD D178N) when associated with a valine at codon 129 (Goldfarb et

al., 1992).

According to The European Creutzfeldt-Jakob disease Surveillance System a

collaborative surveillance project (Kovacs et al., 2005), 455 (10.2%) of all 4,441 TSE

cases registered in Europe between 1993 and 2002 were genetic. The D178N mutation

was present in 82 cases (18.02% of all genetic cases) including 16 with gCJD (D178N-

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129V) and 66 with FFI (D178N-129M). Interestingly, up to 47% of all genetic cases

showed no family history (Kovacs et al., 2005). In China, Zheng and colleagues found

PRNP mutations in 5 of 185 patients with sporadic neurodegenerative dementias (Zheng

et al., 2008). These sporadic-genetic cases could be explained partially by mutations

that appear de novo (Dagvadorj et al., 2002). Since de novo mutations can affect germ

lines and somatic cells, mosaicism may explain sCJD cases that carry a mutation in

PRNP. Somatic mosaicism has not yet been described in prion diseases.

Here we report the first description of a genetic CJD patient with a de novo mutation in

the 178 codon of PRNP showing a somatic mosaicism caused by a post-zygotic

mutation who presented a clinical phenotype of sCJD.

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MATERIAL AND METHODS

DNA was extracted from whole peripheral blood cells (PBC) by standard procedures

for genomic studies. DNA was also obtained from nine brain regions (frontal, temporal,

occipital and parietal cortices, cerebellum, caudate nucleus, brainstem, thalamus and

striatum) using QIAmp DNA mini kit (QIAGEN) following the recommendations of the

supplier.

PRNP amplification and sequencing

The PRNP open reading frame (ORF) was amplified by PCR in two different amplicons

using 5’ORF-PRNP Fw and Rev and 3’ORF-PRNP Fw and Rev primers (Table 1) and

Phusion® Hot Start High-Fidelity DNA Polymerase (Fynnzymes, Finland). PCR

products were sequenced in both directions using M13(-21) universal primers on an

ABI 3130 system with Big Dye v3.1 following the manufacturer’s protocol (Applied

Biosystems, USA).

Determination of the linkage phase of codons 178D/N-129M/V

A fragment of 300 bp was amplified using primers PORF-L and PORF-H (Table 1)

followed by double restriction enzyme digestion, using enzymes Tth111I and

HpyCH4IV (New England Biolabs, USA), as described elsewhere (Rodriguez-Martinez

et al., 2008).

To further characterise the genomic region surrounding the PRNP gene, four

microsatellite loci (MsP1, MsP2, MsP4 and MsP5) (Rodriguez-Martinez et al., 2005)

and five single nucleotide polymorphisms (rs2756271, rs6037932, rs13045348,

rs6116474 and rs6116475) (Rodriguez-Martinez et al., 2008) were analysed in the

patient and the parents.

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PCR product cloning and sequencing

A fragment of PRNP which includes the sequence for codon 129 and codon 178 was

amplified by PCR using primers that we designed (PRNP Fw and PRNP Rev) (Table 1).

The PCR product was A tailed, purified and ligated to a pGEM-T vector (pGEM-T and

pGEM-T Easy Vector Systems, Promega, USA). These vectors were transformed into

One Shot TOP 10 Competent E. coli (Invitrogen, USA) and cells were plated and

incubated in agar (1% ampicilin) at 37ºC overnight. The colonies were picked and

incubated in liquid media (1% ampicillin) 4-5 hours. A PCR was performed with

PGEM-T Fw and Rev primers (Table 1) and those that had the vector inserted were

sequenced on an ABI 3130 system.

Assessment of biological paternity

Paternity was verified by the analysis of 15 microsatellite loci (AmpFlSTR®

Identifiler™ PCR Amplification Kit, Applied Biosystems); 10 of them were further

confirmed using the AmpFlSTR® SGM Plus™ PCR Amplification Kit (Applied

Biosystems). The index of paternity was calculated from the probability of paternity

obtained by Familias v1.6 software (Egeland et al., 2000).

Allelic dosage

Two different methods were used to estimate the proportion between wild-type 129V-

178D and mutant 129V-178N alleles:

A. Quantitative PCR SNP detection. A fragment of PRNP was amplified as mentioned

in the paragraph PCR product cloning and sequencing. Amplification product was

digested by BsaAI restriction enzyme which cuts the amplified product corresponding

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to 129V, thus allowing discrimination between 129V and 129M allele fractions.

Digestion product was run and the DNA fragment of 311bp which corresponds to 129V

allele was purified from the agarose gel using QIAquick Gel Extraction Kit (Qiagen).

129V allele fractions were analyzed using a 7900HT (Applied Biosystems) and a

Custom TaqMan SNP genotyping assay (Applied Biosystems) to detect the D178N

mutation. An approach based on Ct numbers was used to calculate the percentage of

wild type (178D) and mutated alleles (178N) as follows (Bai and Wong ,2004):

proportion of mutant = 1/(1+1/2∆Ct

) where ∆Ct = Ctwild-type

- Ctmutant

). qPCR analyses

were performed in 9 independent PCRs for each tissue (brain and PBC) and in triplicate

for each PCR. The father’s sample was also processed in triplicate. The approach was

validated with experimental samples containing 80%, 60%, 40% and 20% of mutant

allele generated by mixing known amounts of cloned plasmid DNA. Likewise, controls

containing 100% of mutated and 100% of wild-type alleles were included.

B. AFLP analysis on ABI 3130 system. A labeled 129V allele fraction was obtained as

indicated above but using a tag PRNP Rev primer marked with HEX fluorochrome

instead of PRNP Rev primer. The labeled 129V allele population was digested for 3

hours with Tth111I restriction enzyme, which cuts the fragments corresponding to

178D. This digestion was analyzed on an ABI 3130 system, and the generated data with

GeneMapper software (Applied Biosystems).

Neuropathological study

At autopsy, most of the brain was fixed in buffered 10% formalin for a month

at room temperature. Then, selected tissue blocks were immersed in formic

acid for 1 h, post-fixed in formalin and embedded in paraffin. The sections

were stained with haematoxylin and eosin, periodic acid Shiff (PAS) and

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Klüver-Barrera, and processed for immunohistochemistry following the

EnVision + system peroxidase procedure (Dako, Dakopats, Barcelona, Spain)

for glial fibrillary acidic protein, CD68 for microglia, hyper-phosphorylated

tau epitopes (antibody AT8), phosphorylated neurofilament epitopes, β-

amyloid 1-40 and β-amyloid 1-42, α-synuclein, ubiquitin, TDP-43, αB-

crystallin, and prion protein (antibody 3F4) both without and with pre-

treatment with proteinase K.

Western blot analysis

Fresh frozen samples of the frontal, occipital and parietal cortices, cerebellum, and

striatum obtained at autopsy and stored at -80ºC until use were processed for gel

electrophoresis and western blotting (Hill et al., 2006) using the 3F4 monoclonal

antibody for specific staining of PrP. Samples were pre-incubated with proteinase K to

reveal PrPSc

.

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RESULTS

Case report

The patient was a 46-year-old lawyer, right-handed, and with no family history of

dementia. He presented with an 18-month history of anxiety, emotional lability,

depressed mood, irritability and insomnia. He responded well to treatment with

venlafaxine and gabapentin but one year later he started to show forgetfulness, difficulty

in recalling recent events, and occasional spatial disorientation. At the first visit, he

showed signs of left corticospinal failure, and he had difficulties performing the tandem

gait test. Formal testing showed reduced verbal fluency, mild anomia, moderate

memory deficits, severe deficit in visual-perspective and visual-constructive abilities,

and mild dysexecutive syndrome. Standard brain Magnetic Resonance Imaging (MRI)

and single photon emission computerized tomography were reported as normal. 18

FDG-

PET (18-Fluoro Deoxy Glucose-Positron Emission Tomography) scan showed cortical

and left thalamic hypometabolism (Supplementary Figure 1). CerebroSpinal fluid was

normal with negative 14-3-3 protein. A new brain MRI including diffusion-weighted

sequences showed cortical hyper-intensities involving frontal, cingulate, temporal,

parietal and occipital regions (Supplementary Figure 2). Two and a half years after the

onset, he developed generalized bradykinesia, postural-kinetic ataxia and tremor of the

left hand, focal myoclonus, and corticospinal signs with generalized brisk tendon

reflexes and left extensor plantar response. Gait was slightly impaired, and accompanied

by instability. Spontaneous speech was non-fluent with some hesitancy and dysprosody.

Electroencephalogram was unremarkable. He could no longer work and required

assistance for most instrumental activities of daily living. The patient deteriorated

during the following two years and he developed widespread spontaneous and action

myoclonus, progressive ataxia, more severe pyramidal signs and eventual akinetic

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mutism. He was clinically diagnosed as possible CJD although he would be diagnosed

as probable CJD following the new proposed criteria (Zerr et al., 2009). He died at the

age of 50 years of a respiratory tract infection. Post-mortem examination was performed

15 hours after death, only the brain was removed.

Genotyping of PRNP

PRNP genotyping showed a heterozygous D178N mutation and M129V polymorphism

by sequencing DNA extracted from both PBC and brain cells. The unaffected parents of

the proband were not carriers of the mutation. The genotypes were 129MV-178DD in

his father and 129VV-178DD in his mother. Paternity was confirmed by microsatellite

typing (LR=2.9 E9).

To further characterize this chromosome harboring the mutation, we analysed four

microsatellite loci and five single nucleotide polymorphisms surrounding the PRNP

gene (Figure 1). Disease-associated haplotype proved to be 33-20-C-T-T-T-A-129V-

178N-19-7.

Presence of three different alleles

The D178N mutation was determined to be in ligation phase with 129V by double

enzyme digestion of DNA extracted from PBC. Bands corresponding to the mutant

129V-178N and wild-type 129M-178D alleles were detected. In addition, two soft

bands appeared. One of them (300bp) corresponded to the 129M-178N allele but the

presence of this allele could not be confirmed by other techniques, suggesting it may

have been the consequence of partial digestions. The other band (152bp) corresponded

to the wild type 129V-178D allele (Figure 2). Cloning of PCR products of DNA

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extracted from PBC containing both 129 and 178 positions confirmed the presence of

three different alleles by sequencing 72 colonies: 129M-178D (40/72), 129V-178N

(30/72) and 129V-178D (2/72). Furthermore, enzymatic digestion with BsaA1 allowed

the selection of the 129V allele population. To confirm the presence of 129V-178D

allele, the fraction corresponding to 129V population was selected and sequenced. As a

result, the electropherogram of DNA extracted from PBC and brain tissue showed a

weak peak of G nucleotide corresponding to 178D overlapping the main A peak

corresponding to mutant 178N allele (Figure 3). The PRNP sequence of the parents

clearly showed only the wild type G peak.

Allele dosage

AFLP analyses failed to estimate the percentage of the two alleles, probably because of

the relaxed sequence recognition shown by Tth111I restriction endonuclease.

Quantitative PCR SNP detection technology (see Material and methods) showed a good

correlation coefficient between expected and observed values (R2=0.991). Then the

proportion of mutated allele in the 129V fraction, which is equal to the percentage of

cells carrying mutation assuming normal chromosomal composition of cells, was

obtained. The analysis showed that 96.7% (±5.5%) of PBC and 97.5% (± 3.3%) of brain

cells were mutated. Controls carrying only mutated or wild type alleles resulted in

99.999% (± 6.7 E-06%) and 2.4 E-10% (± 1.8 E-10%) of mutated alleles, respectively.

The sample from the father showed results within the range of the wild type of controls

(3.7 E-10% of mutated alleles).

Neuropathological study

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The brain weighed 1.390 g. The macroscopical examination did not show major

pathologic features. The microscopical examination disclosed variable neuron loss in

the cerebral cortex, accompanied by spongiform change characterized by small,

confluent microvacuoles (Figure 4 A-E). Lesions were more marked in the entorhinal

cortex followed by the frontal, temporal, parietal, occipital and insular cortices, and then

the subiculum. Discrete and focal spongiform degeneration was found in the CA1

region of the hippocampus, whereas the dentate gyrus was spared. The cerebellum

showed moderate loss of Purkinje cells and moderate spongiform change in the

molecular layer (Figure 4 F). Massive spongiform change occurred in the caudate and

putamen with confluent vacuoles and severe neuron loss (Figure 4 G, H). This was in

contrast with the apparent preservation of the globus pallidus (Figure 4 I). The thalamus

showed mild spongiosis.

Astrocytic gliosis was found in the cerebral cortex (Figure 5 A) but astrocytes were

practically absent in the caudate and putamen (Figure 5 B). αB-crystallin

immunohistochemistry disclosed large numbers of immunoreactive neurons in the deep

layers of the frontal and temporal cortex, whereas only weakly immunoreactive cellular

debris was present in the putamen (Fig. 5 C-E). Moderate to severe microgliosis was

similar to that seen in other CJD cases (data not shown).

PrPSc

immunohistochemistry revealed accumulation of PrP resistant to proteinase K in

the cerebral cortex, basal ganglia and cerebellum. PrPSc

deposition was characterized by

globular confluent deposits forming structures reminiscent of morulae. Isolated deposits

were manifested as globules, mainly in the inner layers of the cortex. Similar deposits

were seen in the different regions of the cerebral cortex, including neocortex and

subiculum, and in the cerebellum (Figure 5 F-I). These structures differed from more

common PrPres

deposits in the different forms of sCJD (Ironside et al., 2008). Florid and

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kuru-like plaques were absent. A fine, punctate PrP pattern was additionally observed in

sections not treated with proteinase K (data not shown).

β-amyloid plaques were absent. Neurofibrillary tangles and other hyper-phosphorylated

tau inclusions were not observed in any region. α-synuclein inclusions were absent.

TDP-43 immunohistochemistry disclosed no abnormalities in the cellular localization of

the antibody.

PrP typing

Immunoblotting showed positive signal for PrPSc

in all regions analyzed (Figure 6).

Occipital and temporal cortices were the regions with the most intense PrPSc

signal. The

molecular weight of the non-glycosylated band was 21 kDa and it was under-

represented compared with the glycosylated bands (Figure 6 and Supplementary Figure

3). Differences in the prion protein band intensity correlated with PrPSc

deposition as

revealed by immunohistochemistry; higher expression levels were found in the cerebral

cortex, whereas the striatum and cerebellum showed lower PrPSc

expression. Samples of

the proband were processed in parallel with samples from typical CJD PrP type I and

type II, FFI (PRNP D178N-129M) and Gerstmann-Sträussler-Scheinker disease (PRNP

Y218N). As seen in Figure 6, the pattern of the present PRNP D178N 129V mutation

differs from the pattern of other sporadic and inherited prion diseases.

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DISCUSSION

Here we report a case of apparently sporadic CJD carrying a de novo D178N mutation

in PRNP. The parents, whose paternity was genetically confirmed, did not carry the

mutation. Some authors have suggested that the global distribution of the D178N

mutation is determined by recurrent mutational events because of the hot-spot nature of

the sequence (Dagvadorj et al., 2002). The characterization in this case of

microsatellites-SNPs haplotypes formed by markers located close to or within PRNP

(expanding 107,3kbp around codon 178) may allow future comparisons with other

gCJD patients with D178N-129V, to clarify a founder effect.

Clinically, this patient did not differ from other cases of sCJD. The neuropathological

study revealed marked involvement of the caudate and putamen, and widespread

distribution of typical lesions in the cerebral cortex, as previously reported in gCJD

D178N-129V (Ironside et al., 2008; Parchi et al., 1996; Parchi et al., 2003). The

characteristics of the PrPSc

deposition are different from what is seen in the distinct

types of sCJD (Ironside et al., 2008). It is here characterized by the presence of small

globules, often confluently forming globular masses reminiscent of morulae that at a

low magnification may resemble patches. Prion typing also differs from typical patterns

encountered in sCJD. As previously reported in gCJD D178N-129V (Haik et al., 2004;

Parchi et al., 1999; Parchi et al., 2003; Parchi et al., 2009), the PrPres

pattern resembles

type I because of the size of the lower band of about 21 kDa, but this lower band is

under-represented in comparison with the glycosylated forms. This pattern is also

similar to that seen in gCJD E200K-129M because of the under-representation of the

lower band, but it is clearly distinct from the FFI profile (D178N-129M) and gCJD

E200K-129V in which the low band has 19 kDa in which the low and under-represented

band has 19 kDa (Gambetti et al., 2003; Parchi et al., 2003). Thus, the E200K and

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D178N mutations have opposite PrP types depending on the presence of valine or

methionine in codon 129.

In the present case, the D178N mutation in PRNP is mainly coupled with valine at

codon 129 (129V-178N), but there is a fraction of 129V allele population associated

with wild-type 178D (129V-178D). Therefore, this patient carried three different alleles:

the wild types 129M-178D and 129V-178D, and the mutant 129V-178N. The existence

of these three alleles was confirmed by robust techniques such as the cloning and

sequencing of PCR products. Furthermore, control samples were included in the

different analysis methods and the results were coherent. The mosaic nature implies that

this de novo mutation is a post-zygotic mutation. To our knowledge this patient

represents the first case of a defined somatic mosaicism of a mutation in PRNP.

Recently, it has been suggested that mosaicism is common in all genes throughout the

genome and that a few genetically altered cells in the body may influence diseases such

as cancer or neurodegeneration (Frank ,2009). Somatic mosaicism with development of

specific disease-associated mutations has been suggested as a potential cause of several

hereditary disorders. Thus, somatic mosaicism has been reported in 10-20% of sporadic

cases of retinoblastoma (Sippel et al., 1998), as well as in Duchenne muscular

dystrophy (Passos-Bueno et al., 1992; van Essen et al., 1992) and other diseases

(Ketterling et al., 1999; Leuer et al., 2001; Verhoef et al., 1999).

In our case, approximately 97% of cells of mesoderm-derived PBC and ectoderm-

derived brain cells harbored the D178N mutation. Unfortunately, no endoderm was

available for genetic study. The high, and similar, percentage of mutated cells among

cells developing from different embryonic layers suggests that the mutation occurred at

an early stage of embryogenesis. This is an important issue, as the offspring of a patient

suffering from gCJD has a 50% probability of inheriting the mutation. Yet the

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probability of transmission of a de novo PRNP mutation differs depending on pre- or

post-zygotic origin of the mutation. In the former case, 50% of the offspring will carry

the mutation, whereas in the latter the percentage depends on the distribution and

percentage of mutated cells. Therefore, the mutation analysis of PRNP in DNA

extracted from different germ layers becomes necessary. This notion could be

particularly useful for the study of possible mutations in apparently sporadic cases.

Regarding neurodegenerative diseases, including sCJD, it is important to obtain DNA

from ectodermal tissues such as the oral cavity mucosa (oral epithelial cells), hair roots

and cerebrospinal fluid, as they are embryologically related with the neural tissue.

Detection of somatic mosaicism with a low percentage of mutated cells may require

more precise techniques such as PCR product cloning and sequencing.

In conclusion, we report the first case of an apparently sporadic CJD with a somatic

mosaicism of a mutation in PRNP. In light of this case, the sequencing of PRNP is

compulsory even when the family history is negative, in order to give proper genetic

counseling in CJD cases.

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ACKNOWLEDGEMENTS

We thank Dr. Amets Saenz for her helpful advice and Concha Vidales for her technical

contribution. The technical work of Mrs. Margarita Carmona and Rosa Blanco is greatly

appreciated. We thank T. Yohannan for editorial assistance. The authors declare no

conflict of interests. This work was supported by Ilundain Fundazioa, Diputación Foral

de Gipuzkoa [expediente 76/08], the Basque Government (SAIOTEK program) and

Centro de Investigación Biomédica en Red sobre Enfermedades Neurodegenerativas

(CIBERNED). This work was also supported by Neuroprion (EU 2004 Food-CT-2004-

506579) and Brain Net II (EU 2004-CT-2004-503039).

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Figure legends

Figure 1: Haplotypes of microsatellites and SNPs of the patient and his parents. The

order of markers within the haplotype, according to position in chromosome 20, is as

follows: MsP1, MsP2, rs2756271, rs6037932, rs13045348, rs6116474, rs6116475,

codon 129, codon 178, MsP4 and MsP5. Hatched bar indicates haplotype of the parental

chromosome in which the mutation appeared. Filled bar represents the haplotype of the

mutated chromosome 178N in mosaicism with the wild-type chromosome 178D.

Figure 2: Double-enzyme digestion to determine ligation phase between 129MV and

178DN. A: The scheme shows the expected size of the fragments after double digestion

with enzymes HpYCH4 IV and Tth111 I depending on the amino acid encoded by

codon 129 to which the mutation D178N is associated; B: 3% agarose gel stained with

ethidium bromide of double digestion of amplified fragment of PRNP gene. 239bp and

61bp bands correspond to 129M-178D allele, and 213bp and 87bp bands to 129V-178N

allele. But there are two additional soft bands: a 300bp band that could result from

partial digestions and a 152bp band that corresponds to 129V-178D allele.

Figure 3: Electropherogram of codon 178 (in the box) and the flanking region of the

PRNP gene obtained by the sequencing the PCR fraction corresponding to 129V alleles.

This fraction is selected by digestion of PRNP PCR by BsaA1 restriction enzyme. A)

DNA extracted from PBC; B) DNA extracted from brain tissue.

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Figure 4: Neuron loss and spongiform change in the frontal (A), occipital (B), temporal

(C) cortex, subiculum (D), entorhinal cortex (E), cerebellum (F), caudate (G) and

putamen (H). Severe spongiform change is found in the caudate and putamen compared

with the other regions. Tissue shrinkage resulting from cell loss is apparent in the

entorhinal cortex. This is in striking contrast with the apparently normal morphology of

the globus pallidus (I). Paraffin sections, stained with hematoxylin and eosin, x400.

Figure 5: Marked astrocytic gliosis in the cerebral cortex (A) contrasts with the almost

complete disappearance of astrocytes in the putamen (B). αB-crystallin-immunoreactive

cells are found in the deep and middle layers of the frontal (C) and temporal (E)

cortices, whereas αB-crystallin remnants are observed in the putamen (E). PrP resistant

to proteinase K is manifested as confluent globular deposits forming plaques

reminiscent of morulae in the cerebellum (F), frontal cortex (G) and temporal cortex

(H). Linear laminar globules are present in the subiculum (I). Paraffin sections, A, B:

GFAP; C-E: αB-crystallin; and F-I: PrPres

immunohistochemistry, x400.

Figure 6: PrP blotting of sCJD type I, frontal cortex (I), sCJD type II, frontal cortex

(II), a case of Gerstmann-Sträussler-Scheinker (GSS) bearing the PRNP Y218N

mutation and one case of Fatal Familial Insomnia (FFI) bearing the 129 Met/Met PRNP

D178N mutation run in parallel with the case carrying the de novo PRNP D178N

mutation: 1: occipital cortex; 2: striatum; 3: cerebellum; 6: parietal cortex; 8: frontal

cortex.

Note that the lower band in the de novo mutation corresponds to PrP type I (about 21

kDa) and differs from that seen in FFI (type II; about 19 kDa). The PrP pattern in the de

novo mutation is reminiscent of type I of sporadic CJD.

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Table 1: Primer sequences (5′–3′), amplicon lengths (bp) and PCR conditions used for

PRNP amplification and sequencing (PRNP Fw and Rev), determination of the linkage

phase of codons 178-129 (PORF L and H) and PRNP product cloning and sequencing

(PGEM-T Fw and Rev).

Primer names Primer sequence (5’-3’) amplicon

length (bp)

PCR conditions

5’PRNP Fw TGTAAAACGACGGCCAGTGTCCTAAGTGCTTCAGA

5’PRNP Rev CAGGAAACAGCTATGACCTAGTACACTTGGTTGGGGTA

683

3’PRNP Fw TGTAAAACGACGGCCAGTGAACAAGCCGAGTAAGCCAA

3’ PRNP Rev CAGGAAACAGCTATGACCGGGGCTTGACCAGCATCTCA

692

96ºC, 3 min; 5 cycles (94ºC,

40’’; 55ºC, 40’’; 72ºC,60’’); 30

cycles (94ºC, 40’’:60ºC, 40’’,

72ºC, 60’’); 72ºC, 4 min

PRNP Fw GCCAAAAACCAACATGAAGC

PRNP Rev CATGCTCGATCCTCTCTGG

385 98ºC, 30s; 35 cycles (98ºC, 10s;

touch-down 63ºC-58ºC, 30s;

72ºC, 30s); 72ºC, 7 min

PORF-L CCTCTTCATTTTGCAGAGCA

PORF-H GATGGTGAAAACAGGAAGACC

300 95°C, 5 min; 35 cycles (94°C, 30

s; 63°C, 30 s; 72°C, 30 s); and

72°C, 5 min

pGEM-T Fw GGGCGAATTGGGCCCGACGT

pGEM-T Rev CCAAGCTATTTAGGTGACAC

535 95°C, 5 min; 35 cycles (95°C, 30

s; 60°C, 30 s; 72°C, 45 s); and

72°C, 5 min

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Figure 1: Haplotypes of microsatellites and SNPs of the patient and his parents. The order of markers within the haplotype, according to position in chromosome 20, is as follows: MsP1, MsP2, rs2756271, rs6037932, rs13045348, rs6116474, rs6116475, codon 129, codon 178, MsP4 and MsP5. Hatched bar indicates haplotype of the parental chromosome in which the mutation

appeared. Filled bar represents the haplotype of the mutated chromosome 178N in mosaicism with the wild-type chromosome 178D.

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Figure 2: Double-enzyme digestion to determine ligation phase between 129MV and 178DN. A: The scheme shows the expected size of the fragments after double digestion with enzymes HpYCH4 IV and Tth111 I depending on the amino acid encoded by codon 129 to which the mutation D178N is associated; B: 3% agarose gel stained with ethidium bromide of double digestion of amplified

fragment of PRNP gene. 239bp and 61bp bands correspond to 129M-178D allele, and 213bp and 87bp bands to 129V-178N allele. But there are two additional soft bands: a 300bp band that could

result from partial digestions and a 152bp band that corresponds to 129V-178D allele. 254x190mm (96 x 96 DPI)

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Figure 3: Electropherogram of codon 178 (in the box) and the flanking region of the PRNP gene obtained by the sequencing the PCR fraction corresponding to 129V alleles. This fraction is selected

by digestion of PRNP PCR by BsaA1 restriction enzyme. A) DNA extracted from PBC; B) DNA extracted from brain tissue. 254x190mm (96 x 96 DPI)

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Neuron loss and spongiform change in the frontal (A), occipital (B), temporal (C) cortex, subiculum (D), entorhinal cortex (E), cerebellum (F), caudate (G) and putamen (H). Severe spongiform change

is found in the caudate and putamen compared with the other regions. Tissue shrinkage resulting from cell loss is apparent in the entorhinal cortex. This is in striking contrast with the apparently

normal morphology of the globus pallidus (I). Paraffin sections, stained with hematoxylin and eosin, x400

150x112mm (381 x 381 DPI)

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Marked astrocytic gliosis in the cerebral cortex (A) contrasts with the almost complete disappearance of astrocytes in the putamen (B). αB-crystallin-immunoreactive cells are found in the deep and middle layers of the frontal (C) and temporal (E) cortices, whereas αB-crystallin remnants

are observed in the putamen (E). PrP resistant to proteinase K is manifested as confluent globular deposits forming plaques reminiscent of morulae in the cerebellum (F), frontal cortex (G) and

temporal cortex (H). Linear laminar globules are present in the subiculum (I). Paraffin sections, A, B: GFAP; C-E: αB-crystallin; and F-I: PrPres immunohistochemistry, x400

150x112mm (381 x 381 DPI)

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PrP blotting of sCJD type I, frontal cortex (I), sCJD type II, frontal cortex (II), a case of Gerstmann-Sträussler-Scheinker (GSS) bearing the PRNP Y218N mutation and one case of Fatal Familial

Insomnia (FFI) bearing the 129 Met/Met PRNP D178N mutation run in parallel with the case carrying the de novo PRNP D178N mutation: 1: occipital cortex; 2: striatum; 3: cerebellum; 6: parietal

cortex; 8: frontal cortex. Note that the lower band in the de novo mutation corresponds to PrP type I (about 21 kDa) and differs from that seen in FFI (type II; about 19 kDa). The PrP pattern in the de novo mutation is

reminiscent of type I of sporadic CJD, yet the the unglycosylated band is under-represented (compare lane 1 with lane 8 both corresponding to the frontal cortex), and this is particularly

marked in the striatum (lane 2). 254x190mm (96 x 96 DPI)

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