Parallel evolution of larval morphology and habitat in the snail-killing fly genus Tetanocera
Transcript of Parallel evolution of larval morphology and habitat in the snail-killing fly genus Tetanocera
Parallel evolution of larval morphology and habitat in thesnail-killing fly genus Tetanocera
E. G. CHAPMAN,* B. A. FOOTE,* J. MALUKIEWICZ� & W. R. HOEH*
*Evolutionary, Population, and Systematic Biology Group, Department of Biological Sciences, Kent State University, Kent, OH, USA
�Program in Biological Anthropology, Department of Anthropology, Kent State University, Kent, OH, USA
Introduction
Detecting significant correlations among ecological and
morphological traits is one of the primary objectives of
comparative biology (Harvey & Pagel, 1991; Martins &
Hansen, 1996; Armbruster, 2002; Felsenstein,
2004). Phylogenetic comparative methods (e.g.
Felsenstein, 1985a; Maddison, 1990,2000; Pagel,
1994,1997,2000,2002; Martins, 2000; Maddison & Mad-
dison, 2003; Pagel et al., 2004), which allow statistically
rigorous testing of correlations among characters, help us
to gain insight into which morphological characters may
be adaptive in differing habitats. Few studies of dipteran
taxa have used phylogenetic comparative methods to
study morphological adaptations that occurred in concert
with or in response to habitat transitions (e.g. Scheffer &
Wiegmann, 2000). Fewer yet have attempted to unravel
the morphological adaptations that have facilitated or
accompanied transitions between aquatic and terrestrial
habitats. Although Vermeij & Dudley (2000) reported
that transitions between aquatic and terrestrial habitats
are rare in plants and animals (with the exception of
tetrapod vertebrates), there are a number of dipteran
families that have sublineages that must have made such
transitions (e.g. Chironomidae, Dolichopodidae, Empid-
idae, Ephydridae, Muscidae, Sarcophagidae, Sciomyzi-
dae, Stratiomyidae, Syrphidae, Tabanidae, and
Tipulidae). Our study, which used phylogenetic compar-
ative methods to explore morphological adaptations to
both aquatic and terrestrial habitats in the sciomyzid
genus Tetanocera, is one of the first to do so within a
dipteran lineage.
The genus Tetanocera (Diptera: Sciomyzidae: Tetanoce-
rini) displays significant potential for studying morpho-
logical adaptations that may have occurred in concert
with or in response to habitat transitions for two reasons:
Correspondence: E. G. Chapman, Department of Biological Sciences,
Cunningham Hall, Kent State University, Kent, OH 44242-0001, USA.
Tel.: (330) 672-2921; fax: (330) 672-3713;
e-mail: [email protected]
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Keywords:
parallel evolution;
phylogenetic comparative method;
phylogenetic niche conservatism;
Sciomyzidae;
Tetanocera.
Abstract
In this study, we sequenced one nuclear and three mitochondrial DNA loci to
construct a robust estimate of phylogeny for all available species of Tetanocera.
Character optimizations suggested that aquatic habitat was the ancestral
condition for Tetanocera larvae, and that there were at least three parallel
transitions to terrestrial habitat, with one reversal. Maximum likelihood
analyses of character state transformations showed significant correlations
between habitat transitions and changes in four larval morphological charac-
teristics (cuticular pigmentation and three characters associated with the
posterior spiracular disc). We provide evidence that phylogenetic niche
conservatism has been responsible for the maintenance of aquatic-associated
larval morphological character states, and that concerted convergence and/or
gene linkage was responsible for parallel morphological changes that were
derived in conjunction with habitat transitions. These habitat–morphology
associations were consistent with the action of natural selection in facilitating
the morphological changes that occurred during parallel aquatic to terrestrial
habitat transitions in Tetanocera.
doi:10.1111/j.1420-9101.2006.01132.x
(i) larvae of its ca. 39 currently recognized species inhabit
both aquatic and terrestrial habitats (Foote,
1996a,b,1999); (ii) Larvae of aquatic species share a suite
of morphological characteristics that differentiates them
from the terrestrial species (Fig. 1). Aquatic Tetanocera
larvae live just under the surface of the water, usually
against dark floating debris or plant stems (Foote, 1999),
whereas terrestrial Tetanocera larvae occupy habitats
ranging from damp near-shore to drier woodland habi-
tats (Foote, 1996a,b). Aquatic Tetanocera larvae are darkly
pigmented (nearly black), which is likely for crypsis. The
posterior spiracular disc is typically modified in three
ways: (i) the last abdominal segment is lengthened and
the disc is upturned; (ii) the spiracles have a ring of long,
branched, hydrophobic hairs (float hairs); and (iii) there
are elongated, hirsute ventrolateral and ventral lobes
extending from the disc (Fig. 1a, b). The upturned
spiracular disc enables the larvae to breathe while
remaining ca. horizontal under the surface of the water.
The float hairs perform two functions: Aquatic Tetanocera
larvae attack and eat aquatic snails just below the surface
of the water (Foote, 1999). When a prey item dies or
flees, it sometimes loses contact with the surface of the
water, and drops through the water column, pulling the
feeding Tetanocera larva down with it. When this hap-
pens, the float hairs fold over the spiracles, trapping a
bubble of air (Foote, 1999). As the larva contacts the
surface, the hydrophobic float hairs break the surface
tension of the water and hold the spiracles (which
protrude slightly from the spiracular disc) above the
surface (Foote, 1999). The elongated hairy lobes around
the spiracular disc likely aid in keeping the disc at the
surface (B. A. Foote, unpublished data). In contrast,
terrestrial Tetanocera larvae are translucent (the nonpig-
mented cuticle is clear; the larvae appear white to tan).
The last abdominal segment is not lengthened and
terminates in a rear-facing posterior spiracular disc, and
the lobes and float hairs are greatly reduced (Fig. 1c, d).
The distribution of these two distinct suites of larval
character states, in multiple Tetanocera species, could be
the result of either a single habitat shift and subsequent
speciation or multiple shifts and parallel evolution in
larval morphology.
There are a number of interesting evolutionary ques-
tions one can ask about Tetanocera. Do the aquatic and
terrestrial species each comprise distinct lineages, or were
there multiple independent habitat transitions? The
answer to this question would allow us to address
whether the aforementioned morphological differences
between aquatic and terrestrial larvae were the result of a
single habitat transition and subsequent speciation, or if
multiple independent habitat transitions were each
accompanied by the same morphological changes as a
result of parallel evolution. If the latter were true, it
would be consistent with the hypothesis that adaptation
played a significant role in the transitions. Another
evolutionary question deals with the polarity and order
of larval character state transitions that occurred during
Tetanocera phylogenesis: what was the ancestral larval
habitat of Tetanocera? Did the lineage originate with
aquatic larvae, subsequently transitioning to terrestrial
habitats, or the reverse scenario? The nearly equal
number of aquatic and terrestrial species (of the
28 species with known life cycles, 13 are aquatic, 14 are
terrestrial and one is facultative) indicates that either
hypothesis should be considered plausible until they can
be evaluated using robust phylogenetic methods. This
study has four principal objectives: (i) use DNA sequences
to construct a robust estimate of phylogeny for all
available species of Tetanocera, (ii) estimate the polarity
and order of evolutionary transitions in larval habitat that
have occurred during Tetanocera phylogenesis, (iii) test
whether there is a significant correlation between larval
habitat and morphology and (iv) evaluate the hypothesis
that parallel habitat transitions were accompanied by
parallel state shifts in four larval morphological charac-
ters. Phylogenetic comparative methods have allowed us
to detect evolutionary phenomena such as parallel
evolution, concerted convergence/gene linkage, and
phylogenetic niche conservatism within Tetanocera.
Fig. 1 Illustrations of third instar Tetanocera
larvae: (a) Lateral view of Tetanocera ferrugi-
nea (aquatic larva); (b) Posterior spiracular
disc (rear view) of T. ferruginea; (c) lateral
view of T. melanostigma (terrestrial larva);
(d) posterior spiracular disc (rear view) of
T. melanostigma. Figures from Foote (1961).
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Materials and methods
Taxon sampling
The Sciomyzidae contains two subfamilies, with over
99% of the >500 species belonging to the Sciomyzinae
(Marinoni & Mathis, 2000; Knutson & Vala, 2002). The
Sciomyzinae is comprised of two tribes (Sciomyzini and
Tetanocerini). All of the Sciomyzini have terrestrial
larvae, whereas 14 tetanocerine genera have aquatic
larvae. A recent phylogenetic analysis of sciomyzid
morphological data suggests that the Sciomyzinae and
associated tribes are monophyletic (Marinoni & Mathis,
2000). Therefore, phylogenetic analyses were per-
formed on DNA sequences from four loci obtained
from 31 Tetanocera individuals (representing 17 species)
and 23 individuals representing eight outgroup genera
(six from the Tetanocerini and two from the Sciomy-
zini; Table 1). For 11 of the 17 Tetanocera species,
multiple individuals were available and sequenced for
replicate sampling purposes. In all but one case (the
Sciomyza simplex terminal), the four DNA loci sequenced
used to represent a particular terminal taxon were
obtained from the same individual. However, one
individual of S. simplex provided the three mtDNA-
encoded DNA sequences while another contributed the
28S sequence.
Tetanocera larvae feed on (i) nonoperculate pulmonate
aquatic snails in the water, (ii) nonoperculate pulmonate
aquatic snails on the shoreline, (iii) slugs (genera:
Deroceras, Pallifera, Philomycus), (iv) semi-terrestrial snails
in the family Succineidae and (v) terrestrial snails
(Knutson & Vala, 2002). Only those species that belong
to group no. 1 (above) have truly aquatic larvae. The
genus is Holarctic in distribution with 18 Nearctic, nine
Palaearctic and 12 Holarctic species. Eight of the
Tetanocera species analysed herein have aquatic larvae,
and nine have terrestrial larvae (two in group no. 2,
three in group no. 3, two in group no. 4, and two in
group no. 5). Together, these 17 species span the range of
morphological variation among known Tetanocera larvae
for the characters listed above.
Table 1 List of species analysed in this study with GenBank accession numbers and collecting locality information.
Tribe Species Habitat 28S 16S COI COII Locality
Tetanocerini Tetanocera bergi Steyskal, 1954 A AY875135 AY875104 AY875166 AY875197 USA: AK: Kanai
Tetanocera ferruginea Fallen, 1820 A AY875137 AY875106 AY875168 AY875199 USA: OH: Portage County
Tetanocera latifibula Frey, 1924 A AY875140 AY875109 AY875171 AY875202 Canada: MB: Churchill
Tetanocera mesopora Steyskal, 1959 A AY875142 AY875111 AY875173 AY875204 USA: ID: Buffalo River
Tetanocera montana Day, 1881 A AY875143 AY875112 AY875174 AY875205 Canada: AB; Banff NP
Tetanocera plumosa Loew, 1847 A AY875146 AY875115 AY875177 AY875208 USA: CO: Teller County
Tetanocera robusta Loew, 1847 A AY875147 AY875116 AY875178 AY875209 USA: CO: Teller County
Tetanocera vicina Macquart, 1843 A AY875150 AY875119 AY875181 AY875212 USA: OH: Geauga County
Tetanocera fuscinervis (Zetterstedt, 1838) T AY875138 AY875107 AY875169 AY875200 USA: CO: Teller County
Tetanocera silvatica Meigen, 1830 T AY875148 AY875117 AY875179 AY875210 Germany
Tetanocera kerteszi Hendel 1901 T AY875139 AY875108 AY875170 AY875201 USA: CO: Teller County
Tetanocera phyllophora Melander, 1920 T AY875144 AY875113 AY875175 AY875206 Germany: Ludvika
Tetanocera clara Loew, 1862 T AY875136 AY875105 AY875167 AY875198 USA: OH: Muskingum County
Tetanocera plebeja Loew, 1862 T AY875145 AY875114 AY875176 AY875207 USA: CO: Teller County
Tetanocera valida Loew, 1862 T AY875149 AY875118 AY875180 AY875211 USA: WV: Tucker County
Tetanocera arrogans Meigen, 1830 T AY875134 AY875103 AY875165 AY875196 Ireland
Tetanocera melanostigma Steyskal, 1959 T AY875141 AY875110 AY875172 AY875203 USA
Elgiva connexa Steyskal, 1954 A AY875122 AY875091 AY875153 AY875184 Canada: MB: Churchill
Elgiva solicita (Harris, 1780) A AY875123 AY875092 AY875154 AY875185 USA: OH
Hedria mixta Steyskal, 1954 A AY875124 AY875093 AY875155 AY875186 Canada: MB: Churchill
Limnia bosci Robineau-Desvoidy, 1830 T AY875125 AY875094 AY875156 AY875187 USA: MN: Cass County
Limnia ottawensis Melander, 1920 ? AY875126 AY875095 AY875157 AY875188 USA: SD: Custer Co. Custer SP
Limnia sandovalensis Fisher & Orth, 1978 ? AY875127 AY875096 AY875158 AY875189 Canada: AB; Banff NP
Renocera amanda (Cresson 1920) A AY875128 AY875097 AY875159 AY875190 USA: OH: Summit County
Renocera johnsoni (Cresson, 1920) A AY875129 AY875098 AY875160 AY875191 USA: CO: Teller County
Sepedon armipes Loew, 1859 A AY875130 AY875099 AY875161 AY875192 USA: OH: Portage County
Sepedon fuscipennis Loew, 1859 A AY875131 AY875100 AY875162 AY875193 USA: ND: Bottineau County
Sepedon praemiosa Giglio-Tos, 1893 A AY875132 AY875101 AY875163 AY875194 USA: ID: Bear Lake County
Trypetoptera canadensis (Macquart, 1843) T AY875133 AY875102 AY875164 AY875195 Canada: SK: Maple Creek
Sciomyzini Atrichomelina pubera (Loew, 1862) T AY875120 AY875089 AY875151 AY875182 Canada: SK: Cypress Hills
Sciomyza simplex Fallen, 1820 T AY875121 AY875090 AY875152 AY875183 Canada: AB: Banff NP
Habitat designations: A, aquatic; T, terrestrial. Park abbreviations: NP, National Park; SP, State Park.
Parentheses around the author and year indicates that the species was described under a different genus name. No parentheses indicates that
the species was described under the current genus.
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Laboratory protocols
Field collections of adult specimens were preserved
immediately in 95–100% nondenatured ethanol. In the
lab, specimens were transferred to vials containing 100%
hexamethyldisilazane (HMDS) for at least 24 h, after
which the liquid was decanted, and the specimens were
allowed to dry under a hood. In preparation for total
DNA isolation, the head, legs, wings, and abdomen of
each specimen were removed from the thorax. Total
DNA was isolated from each thorax, and the remaining
body parts (which contain the morphological characters
necessary for species determination) were stored as
vouchers in a vial containing 95–100% ethanol. Each
specimen was given a unique number, and species
identification, collecting locality information, and habitat
notes were recorded in a database.
Total DNA was isolated, using Qiagen DNeasy Tissue
Kits, from each of the terminal taxa (¼sciomyzid species)
in the analyses. Each of the DNA isolates was PCR-
amplified using the primer pairs listed in Table 2. The
mitochondrial and nuclear amplicons were characterized
by cycle sequencing analysis using the PCR amplification
primers listed in Table 2. The protocols for sequencing
template purification and cycle sequencing of the frag-
ments are as presented in Folmer et al. (1994). These
protocols include sequencing template purification in
low-melting point agarose gels and cycle sequencing of
both strands of each purified template using labelled
primers. The separation of cycle sequencing reaction
products was done in 3.7% and 5.5% polyacrylamide
gels on LI-COR 4200L-2 and 4200S-2 automated DNA
sequencers respectively. The resulting sequences were
aligned initially using ALIGNIRALIGNIR (ALIGNIR V2.0ALIGNIR V2.0, LI-COR
Inc.) with subsequent refinement done manually using
MACCLADE V. 4.0MACCLADE V. 4.0 (Maddison & Maddison, 2000). All
sequences presented in this study have been deposited in
the GenBank database (see Table 1 for accession num-
bers). The alignment of the COI and COII sequences were
straightforward, as no indels have been detected in the
sciomyzid sequences generated to date from these loci.
While the 28S sequences contain some indels, we have
found no regions that align ambiguously. However,
indels that do present alignment ambiguities have been
detected in the sciomyzid 16S sequences. Therefore, to
avoid arbitrarily derived topologies, phylogenetic analy-
ses were carried out with both (i) a ‘best’ alignment
containing all of the 16S nucleotides, and (ii) an
alignment with the ambiguous 16S characters deleted.
Phylogenetic analyses
The mtDNA-encoded COI, COII, 16S and the nucleus-
encoded 28S sequences (nuDNA) were analysed using
the maximum likelihood (ML) and maximum parsimony
(MP) algorithms contained in PAUPPAUP* (v.4.0b10; Swofford,
2001). Bayesian inference (BI) analyses were carried out
with MRBAYES V3.1MRBAYES V3.1 (Huelsenbeck & Ronquist, 2001;
Ronquist & Huelsenbeck, 2003). The parsimony-based
ILD test (Farris et al., 1994), as implemented in PAUPPAUP*,
was used to test for incongruence between the mtDNA
and nuDNA datasets. The COI, COII, 16S, and 28S
sequences were analysed simultaneously, as recent
literature indicates that a total evidence approach can
produce the best tree topologies (Collin, 2003; Creer
et al., 2003; Hassanin & Douzery, 2003; Schwarz et al.,
2003). Thus, the total evidence-based trees were used as
the best estimates of the phylogenetic relationships
among Tetanocera species. MODELTESTMODELTEST (V. 3.6:V. 3.6: Posada &
Crandall, 1998) was used to determine which model best
fit the concatenated sequence data. The GTR + G + I
model was used in all BI and ML analyses. Atrichomelina
pubera (Sciomyzini) sequences were used to root the
trees. The ML algorithm in PAUPPAUP*, using the parameters
from the output of MODELTESTMODELTEST, was implemented to
judge which of the 1001 trees sampled from the Bayesian
analysis had the highest log likelihood value and, thus,
represented the best topology.
A total of 54 specimens, representing 31 species, were
included in the initial BI analysis (four chains, two
million generations, 50 000 generation burn-in,
GTR + I + G), after which duplicate individuals for each
Table 2 Genes/primer information used in
this study.Gene primer pair References
Amplicon
size (bp) Notes
Mitochondrial loci
16S LR-N-13398/LR-J-12887 Simon et al. (1994) �550 Primer sequences identical to
those of ‘Locust’
COI LCO1490/HCO2198 Folmer et al. (1994) �700 Together, both COI
COI C1-J-2183/TL2-N-3014 Simon et al. (1994) �800 primer pairs encompass nearly
the entire gene
COII TL2-J-3034/TK-N-3785 Simon et al. (1994)
J.B. Hobbs, UBC
(personal communication)
�800 Amplifies all of COII
Nuclear locus
28S D1F/D6R Park & O’Foighil (2000) �1100
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species were pruned (as all conspecific individuals
formed monophyletic groups with 100% posterior prob-
abilities). Four independent Bayesian analyses were
performed to explore whether they all would arrive at
the same topology. Subsequent MP and ML analyses
were carried out with the pruned dataset, to investigate
whether the use of other tree building algorithms
resulted in congruent or conflicting topologies. Multiple
random terminal taxa addition sequence runs, combined
with global branch rearrangement options, were
employed when generating topologies from the ML and
MP algorithms. These options increased the probability of
finding the actual best topology under each of these two
optimality criteria (e.g. Hendy et al., 1988; Maddison,
1991). Standard bootstrap (Felsenstein, 1985b) analyses
were carried out to evaluate the level of support for
particular nodes obtained from the ML (100 bootstrap
replicates) and MP (10 000 bootstrap replicates) analyses.
Pairwise uncorrected p-distances were calculated, using
PAUPPAUP*, for each gene. To test for significant differences in
topologies between the best unconstrained tree and a
topology produced by constraining the terrestrial Tetano-
cera species to be monophyletic, we used (i) PAUPPAUP* to do
the parsimony-based Kishino-Hasegawa test (KH;
Kishino & Hasegawa, 1989), Templeton test (Wilcoxon
signed-ranks test; Templeton, 1983) and winning sites
(sign) test (Prager & Wilson, 1988) and (ii) CONSEL
(Shimodaira & Hasegawa, 2001) to do the likelihood-
based approximately unbiased (AU, Shimodaira, 2002),
Kishino-Hasegawa (KH), Shimodaira-Hasegawa (SH;
Shimodaira & Hasegawa, 1999), weighted Kishino-
Hasegawa (WKH), and weighted Shimodaira–Hasegawa
(WSH; Shimodaira, 2002) tests. The estimation of ances-
tral character states, based on our best estimate of
phylogeny, was carried out using equally weighted
parsimony methods (e.g. Scheffer & Wiegmann, 2000;
Jousselin et al., 2003; Pauly et al., 2004) and with ML
methods, both using MESQUITEMESQUITE (V.1.05V.1.05; Maddison &
Maddison, 2003). Although Tetanocera plumosa can be
found in both aquatic and wet shoreline (terrestrial)
habitats, it is principally aquatic (Foote, 1961) and was
scored as such in all character optimization procedures.
For the ML optimizations, both the ‘Markov k-state 1
parameter model’ (MK1 model in which ‘forward’ and
‘backward’ transition rates are equal) and the ‘Asym-
metrical Markov k-state 2 parameter model’ (AsymmMK
model in which ‘forward’ and ‘backward’ transition rates
can be different) were used. The asymmetry likelihood
ratio test was used to determine whether the AsymmMK
model was significantly better than the MK1 model.
Tests of correlated evolution
The maximum-likelihood program DISCRETEDISCRETE (Pagel,
1994,1997,1999a,b) was used to test for correlated
evolution between ecological and morphological charac-
ters (omnibus test). This test utilizes a Markov model in a
ML framework, taking branch length information into
account, but does not rely on ancestral character state
reconstruction. Given a pair of binary characters and a
tree topology, the program calculates the log-likelihoods
for two models: (i) a model in which the two characters
are allowed to evolve independently (independent
model) and (ii) a model in which the two characters
evolve in a correlated manner (dependent model: Fig. 2).
A Monte Carlo simulation study, in which character
states are repeatedly assigned independently and ran-
domly to the terminals of the tree, approximates the null
hypothesis distribution for the characters at hand. The
outcome of the simulation is used to determine whether
the independent or dependent model of character evo-
lution best fits the data, via a likelihood ratio test. If the
dependent model (correlated evolution model) fits the
data significantly better than the independent model,
then the null hypothesis that the two traits evolved
independently is rejected. The omnibus test was also used
to test for correlated evolution among morphological
characters. When evidence for correlated evolution was
found, DISCRETEDISCRETE was used to test whether a given trait
changes from state 0 to state 1 before the other (temporal
order test). This is also tested via a likelihood ratio test
that compares the log-likelihood of the full eight-
parameter (dependent) model to that of a seven-param-
eter model in which q12 and q13 are set to be equal to one
another (see Fig. 2). In other words, if two times the
difference in log-likelihoods between the two models is
larger than 3.84 (v2 value with one degree of freedom;
a ¼ 0.05), then the null hypothesis that neither charac-
ter tends to change before the other can be rejected.
Rejecting the null hypothesis of the omnibus test,
combined with failure to reject the null hypothesis of
Fig. 2 Flow diagram showing how habitat [aquatic (AQ) and
terrestrial (T)] and a given morphological character [morphology
typical of aquatic species (Maq) and morphology typical of terrestrial
species (MT)] may evolve in a correlated fashion. The eight qij values
are ‘forward’ and ‘backward’ transition rate parameters estimated
from the data. It is assumed that both traits do not change at the
same time (i.e. q14, q41, q23, and q32 all equal zero).
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the temporal order test indicates that while the two traits
are evolving in a correlated fashion, it is not possible to
tell which trait changes first. When two morphological
traits are being tested, this result indicates that the two
traits are linked by (i) pleiotropy, (ii) indirect selection
through another trait or (iii) concerted evolution
(Armbruster, 2002), but other methods are necessary to
distinguish between these.
We tested whether there were significant correlations
among all possible combinations of larval habitat and the
four morphological characters outlined above. These tests
were conducted on both the entire phylogeny and the
Tetanocera portion only. As Tetanocera plumosa can be
found in both habitats, and the spiracular disc orientation
of T. silvatica could not be determined, all possible
scenarios involving these taxa were tested. All variables
were scored as discrete binary characters as there is a
clear distinction between each scored character’s char-
acter states; [coding: larvae with pigmented cuticle ¼ 0,
unpigmented larvae ¼ 1; float hairs long (extending well
beyond the base of the spiracular tube), branched,
conspicuous ¼ 0, short (not or barely extending beyond
the base of the spiracular tube), unbranched ¼ 1; ven-
trolateral lobes longer than width at base ¼ 0, shorter/
equal to basal width ¼ 1; posterior spiracular disc
upturned ¼ 0, posterior spiracular disc not upturned ¼1]. Larval character states and habitat designations were
obtained from Foote (1959,1961,1971,1976, unpublished
data), Foote et al. (1960), Knutson (1963), Knutson &
Berg (1964), Neff & Berg (1966), and Knutson & Vala
(2002). The sequential Bonferroni technique (Rice,
1989) was used to minimize type I statistical error, the
likelihood of which is increased when performing multi-
ple statistical tests (also see Holm, 1979).
Results
Phylogenetic analyses
Pairwise uncorrected p-distances for 16S and 28S rDNA
sequences are given in Table 3, and those for COI and
COII are given in Table 4. The tree topologies obtained
from the three phylogenetic analyses of the concatenated
dataset were largely congruent, with the BI tree fully
resolved (Fig. 3) and the MP and ML bootstrap trees (not
shown) recovering the same major clades as indicated in
the BI analysis (albeit with lower intra-clade resolution).
All four independent BI analyses converged on the same
topology. The best BI (as judged by ML) and ML trees
were identical (Ln L ¼ )37275.65). The MP analysis of
1217 parsimony-informative characters in the concaten-
ated dataset, produced two equally parsimonious trees
(Ln L ¼ )37322.21 and )37323.07 as judged by ML)
which had identical topologies within Tetanocera, only
differing from the BI and ML trees in the placement of
T. latifibula and T. mesopora: In the MP trees, T. latifibula is
sister to T. montana + T. kerteszi, and T. mesopora is sister to
a clade comprised of the three aforementioned species,
whereas T. latifibula and T. mesopora are sister taxa on the
BI and ML trees. As T. kerteszi is the only terrestrial
species among these four (L.V. Knutson, personal com-
munication), either topology would give nearly identical
results with respect to both character optimizations and
correlated evolution tests. Concatenating the nuDNA and
mtDNA sequences was legitimized by the lack of signi-
ficant incongruence between the datasets (as indicated
by the ILD test, P ¼ 0.974). In the BI analysis, of the
29 internal nodes, 23 were supported by posterior
probabilities ‡0.90, three were between 0.80 and 0.89,
and there was one each in the 0.70, 0.60 and 0.50s
(lowest pp ¼ 0.59).
Tetanocera is clearly supported as a monophyletic group
based on very high nodal support values (BI posterior
probability ¼ 1.00; ML bootstrap percentage ¼ 100; MP
bootstrap percentage ¼ 90; Fig. 3). Within Tetanocera,
three well-supported subclades were inferred, each con-
taining at least one aquatic and one terrestrial species
(Fig. 3 and Table 1). The robusta-silvatica clade (BI pp ¼1.00, ML bootstrap percentage ¼ 100, MP bootstrap
percentage ¼ 100) is sister to the remaining Tetanocera
species. It contains two species: one aquatic and one
terrestrial. The plumosa-mesopora clade (BI pp ¼ 1.00, ML
bootstrap percentage ¼ 82, MP bootstrap percentage ¼65) contains four aquatic, one terrestrial, and one species
(T. plumosa) that can be found both in water and on
shorelines (Foote, 1961). The phyllophora-valida clade (BI
pp ¼ 1.00, ML bootstrap percentage ¼ 97, MP bootstrap
percentage ¼ 74) contains two aquatic and seven ter-
restrial species.
Larval habitats (aquatic vs. terrestrial) of the sciomyzid
species were mapped onto the BI topology using ML
(Fig. 4) and parsimony (Fig. 5) methods. The asymmetry
likelihood ratio test showed that the AsymmMK model
was not significantly better than the MK1 model. Of the
25 internal nodes on the tree, 19 had ancestral states that
were statistically significant as judged by the AsymmMk
optimization model (nodes with an asterisk on Fig. 4a),
and 13 had ancestral states that were statistically signifi-
cant as judged by the MK1 optimization model (nodes
with an asterisk on Fig. 4b). From this analysis, it can be
inferred that the ancestral larvae of Tetanocera was very
likely aquatic (AsymmMk ML estimate ¼ 0.97; MK1 ML
estimate ¼ 0.82). From this ancestral condition, there
were at least three independent transitions to terrestrial
existence, with one reversal (also see parsimony optimi-
zation in Fig. 5). Since the evidence supporting a terrest-
rial ancestral state for the phyllophora-valida clade is
relatively weak (AsymmMk ML estimate ¼ 0.54; MK1
ML estimate ¼ 0.64) as it is for the subsequent node after
T. phyllophora arose (AsymmMk ML estimate ¼ 0.62;
MK1 ML estimate ¼ 0.72), it is possible that the ancestor
of the phyllophora-valida clade was, in fact, aquatic. If this
were true, then terrestrial existence arose five times
independently within Tetanocera, with no reversals.
1464 E. G. CHAPMAN ET AL.
ª 2 0 0 6 T H E A U T H O R S 1 9 ( 2 0 0 6 ) 1 4 5 9 – 1 4 7 4
J O U R N A L C O M P I L A T I O N ª 2 0 0 6 E U R O P E A N S O C I E T Y F O R E V O L U T I O N A R Y B I O L O G Y
Tab
le3
Pair
-wis
eu
nco
rrect
ed
p-d
ista
nce
sbetw
een
scio
myzi
dsp
eci
es
appeari
ng
inTable
1.
Sp
ecie
s1
23
45
67
89
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
1.
Atr
ichom
elin
ap
ub
era
–0.0
20
0.0
52
0.0
59
0.0
54
0.0
54
0.0
58
0.0
54
0.0
65
0.0
63
0.0
57
0.0
54
0.0
56
0.0
51
0.0
54
0.0
53
0.0
55
0.0
50
0.0
53
0.0
52
0.0
48
0.0
57
0.0
47
0.0
54
0.0
59
0.0
51
0.0
48
0.0
52
0.0
56
0.0
60
0.0
49
2.
Scio
myz
asi
mp
lex
0.0
33
–0.0
46
0.0
54
0.0
50
0.0
48
0.0
57
0.0
48
0.0
62
0.0
55
0.0
53
0.0
53
0.0
50
0.0
48
0.0
51
0.0
49
0.0
53
0.0
45
0.0
50
0.0
50
0.0
45
0.0
54
0.0
44
0.0
52
0.0
55
0.0
50
0.0
44
0.0
49
0.0
51
0.0
54
0.0
45
3.
Elg
iva
connexa
0.0
96
0.1
04
–0.0
20
0.0
20
0.0
22
0.0
25
0.0
22
0.0
40
0.0
36
0.0
32
0.0
30
0.0
29
0.0
19
0.0
20
0.0
20
0.0
22
0.0
16
0.0
19
0.0
21
0.0
20
0.0
28
0.0
18
0.0
24
0.0
25
0.0
19
0.0
15
0.0
24
0.0
24
0.0
27
0.0
18
4.
Elg
iva
solic
ita0.0
98
0.1
00
0.1
10
–0.0
32
0.0
36
0.0
38
0.0
36
0.0
51
0.0
48
0.0
37
0.0
38
0.0
36
0.0
33
0.0
32
0.0
30
0.0
36
0.0
27
0.0
29
0.0
32
0.0
31
0.0
39
0.0
30
0.0
35
0.0
36
0.0
31
0.0
28
0.0
34
0.0
35
0.0
40
0.0
31
5.
Hed
ria
mix
ta0.0
90
0.0
78
0.1
07
0.0
96
–0.0
09
0.0
21
0.0
09
0.0
39
0.0
33
0.0
35
0.0
32
0.0
32
0.0
07
0.0
20
0.0
18
0.0
21
0.0
14
0.0
15
0.0
21
0.0
18
0.0
26
0.0
15
0.0
24
0.0
23
0.0
19
0.0
15
0.0
23
0.0
22
0.0
26
0.0
18
6.
Lim
nia
bosc
i0.1
08
0.1
10
0.1
33
0.1
13
0.0
86
–0.0
25
0.0
00
0.0
39
0.0
30
0.0
33
0.0
31
0.0
32
0.0
05
0.0
23
0.0
22
0.0
25
0.0
18
0.0
19
0.0
23
0.0
20
0.0
29
0.0
18
0.0
26
0.0
26
0.0
23
0.0
17
0.0
25
0.0
19
0.0
27
0.0
20
7.
Lim
nia
ott
aw
ensi
s0.1
32
0.1
18
0.1
37
0.1
27
0.0
93
0.1
06
–0.0
25
0.0
49
0.0
42
0.0
41
0.0
37
0.0
38
0.0
23
0.0
18
0.0
16
0.0
19
0.0
15
0.0
15
0.0
25
0.0
19
0.0
25
0.0
17
0.0
27
0.0
19
0.0
16
0.0
17
0.0
19
0.0
23
0.0
26
0.0
19
8.
Lim
nia
sand
ova
lensi
s0.1
08
0.1
10
0.1
33
0.1
13
0.0
86
0.0
00
0.1
06
–0.0
39
0.0
30
0.0
33
0.0
31
0.0
32
0.0
05
0.0
23
0.0
22
0.0
25
0.0
18
0.0
19
0.0
23
0.0
20
0.0
29
0.0
18
0.0
26
0.0
26
0.0
23
0.0
17
0.0
25
0.0
19
0.0
27
0.0
20
9.
Renocera
am
and
a0.1
17
0.1
05
0.1
14
0.1
18
0.1
02
0.1
14
0.1
36
0.1
14
–0.0
43
0.0
49
0.0
41
0.0
47
0.0
37
0.0
37
0.0
39
0.0
38
0.0
35
0.0
37
0.0
37
0.0
37
0.0
45
0.0
35
0.0
40
0.0
42
0.0
36
0.0
32
0.0
40
0.0
40
0.0
45
0.0
35
10.
Renocera
johnso
ni
0.0
92
0.0
96
0.1
31
0.1
14
0.1
18
0.1
12
0.1
22
0.1
12
0.1
24
–0.0
43
0.0
46
0.0
44
0.0
28
0.0
32
0.0
31
0.0
34
0.0
29
0.0
31
0.0
32
0.0
30
0.0
38
0.0
28
0.0
35
0.0
36
0.0
34
0.0
27
0.0
33
0.0
27
0.0
40
0.0
29
11.
Sep
ed
on
arm
ipes
0.1
28
0.1
26
0.1
32
0.1
36
0.1
35
0.1
58
0.1
43
0.1
58
0.1
60
0.1
35
–0.0
24
0.0
04
0.0
30
0.0
29
0.0
32
0.0
34
0.0
30
0.0
31
0.0
34
0.0
32
0.0
34
0.0
30
0.0
37
0.0
36
0.0
28
0.0
28
0.0
35
0.0
34
0.0
38
0.0
31
12.
Sep
ed
on
fusc
ipennis
0.1
25
0.1
33
0.1
35
0.1
28
0.1
36
0.1
39
0.1
61
0.1
39
0.1
63
0.1
41
0.1
04
–0.0
21
0.0
29
0.0
27
0.0
30
0.0
32
0.0
27
0.0
29
0.0
29
0.0
29
0.0
31
0.0
27
0.0
32
0.0
32
0.0
24
0.0
24
0.0
31
0.0
30
0.0
35
0.0
25
13.
Sep
ed
on
pra
em
iosa
0.1
34
0.1
32
0.1
34
0.1
48
0.1
37
0.1
68
0.1
45
0.1
68
0.1
72
0.1
43
0.0
91
0.0
94
–0.0
30
0.0
26
0.0
30
0.0
31
0.0
27
0.0
30
0.0
32
0.0
29
0.0
32
0.0
27
0.0
34
0.0
34
0.0
25
0.0
24
0.0
33
0.0
33
0.0
37
0.0
27
14.
Try
peto
pte
racanad
ensi
s0.1
32
0.1
22
0.1
45
0.1
22
0.1
07
0.1
18
0.0
83
0.1
18
0.1
28
0.1
33
0.1
46
0.1
45
0.1
33
–0.0
20
0.0
19
0.0
22
0.0
15
0.0
16
0.0
20
0.0
17
0.0
27
0.0
15
0.0
23
0.0
23
0.0
20
0.0
14
0.0
22
0.0
17
0.0
25
0.0
17
15.
Try
peto
pte
raarr
ogans
0.1
38
0.1
36
0.1
69
0.1
56
0.1
47
0.1
54
0.1
74
0.1
54
0.1
64
0.1
46
0.1
80
0.1
76
0.1
85
0.1
61
–0.0
10
0.0
11
0.0
07
0.0
11
0.0
15
0.0
12
0.0
13
0.0
10
0.0
17
0.0
13
0.0
08
0.0
08
0.0
15
0.0
18
0.0
17
0.0
10
16.
Try
peto
pte
rab
erg
i0.1
12
0.1
26
0.1
36
0.1
42
0.1
44
0.1
50
0.1
69
0.1
50
0.1
50
0.1
43
0.1
63
0.1
52
0.1
56
0.1
51
0.1
27
–0.0
14
0.0
04
0.0
10
0.0
16
0.0
11
0.0
18
0.0
10
0.0
19
0.0
12
0.0
10
0.0
08
0.0
12
0.0
13
0.0
18
0.0
10
17.
Try
peto
pte
racla
ra0.1
38
0.1
38
0.1
56
0.1
60
0.1
49
0.1
47
0.1
61
0.1
47
0.1
52
0.1
45
0.1
88
0.1
66
0.1
79
0.1
47
0.1
12
0.1
16
–0.0
10
0.0
14
0.0
21
0.0
16
0.0
15
0.0
14
0.0
24
0.0
17
0.0
11
0.0
12
0.0
18
0.0
20
0.0
13
0.0
15
18.
Try
peto
pte
rafe
rrugin
ea
0.1
12
0.1
26
0.1
36
0.1
42
0.1
44
0.1
50
0.1
69
0.1
50
0.1
48
0.1
43
0.1
61
0.1
52
0.1
54
0.1
51
0.1
29
0.0
02
0.1
16
–0.0
07
0.0
12
0.0
08
0.0
14
0.0
06
0.0
15
0.0
10
0.0
07
0.0
04
0.0
10
0.0
11
0.0
14
0.0
07
19.
Teta
nocera
fusc
inerv
is0.1
30
0.1
38
0.1
34
0.1
59
0.1
72
0.1
62
0.1
77
0.1
62
0.1
59
0.1
53
0.1
71
0.1
56
0.1
64
0.1
75
0.1
51
0.1
08
0.1
20
0.1
06
–0.0
15
0.0
10
0.0
18
0.0
09
0.0
18
0.0
14
0.0
11
0.0
09
0.0
15
0.0
16
0.0
19
0.0
11
20.
Teta
nocera
kert
esz
i0.1
16
0.1
20
0.1
36
0.1
25
0.1
26
0.1
46
0.1
49
0.1
46
0.1
43
0.1
29
0.1
49
0.1
54
0.1
42
0.1
46
0.1
18
0.1
14
0.1
18
0.1
12
0.1
20
–0.0
09
0.0
24
0.0
07
0.0
03
0.0
20
0.0
13
0.0
09
0.0
18
0.0
18
0.0
25
0.0
10
21.
Teta
nocera
latifi
bula
0.1
33
0.1
29
0.1
40
0.1
45
0.1
42
0.1
52
0.1
62
0.1
52
0.1
45
0.1
34
0.1
63
0.1
64
0.1
64
0.1
54
0.1
33
0.1
22
0.1
31
0.1
20
0.1
22
0.0
85
–0.0
16
0.0
03
0.0
12
0.0
16
0.0
12
0.0
05
0.0
14
0.0
13
0.0
20
0.0
07
22.
Teta
nocera
mela
nost
igm
a0.1
39
0.1
42
0.1
43
0.1
61
0.1
59
0.1
65
0.1
72
0.1
65
0.1
62
0.1
59
0.1
98
0.1
95
0.1
91
0.1
76
0.1
61
0.1
38
0.1
45
0.1
39
0.1
33
0.1
37
0.1
41
–0.0
17
0.0
27
0.0
19
0.0
14
0.0
16
0.0
22
0.0
24
0.0
20
0.0
17
23.
Teta
nocera
meso
pora
0.1
39
0.1
39
0.1
39
0.1
55
0.1
40
0.1
51
0.1
68
0.1
51
0.1
35
0.1
30
0.1
60
0.1
53
0.1
46
0.1
48
0.1
30
0.1
15
0.1
15
0.1
14
0.1
17
0.0
81
0.0
89
0.1
43
–0.0
09
0.0
14
0.0
10
0.0
02
0.0
12
0.0
11
0.0
18
0.0
04
24.
Teta
nocera
monta
na
0.1
26
0.1
34
0.1
40
0.1
35
0.1
36
0.1
54
0.1
57
0.1
54
0.1
55
0.1
37
0.1
53
0.1
58
0.1
46
0.1
54
0.1
19
0.1
20
0.1
24
0.1
18
0.1
26
0.0
18
0.0
89
0.1
43
0.0
93
–0.0
23
0.0
16
0.0
11
0.0
21
0.0
21
0.0
28
0.0
13
25.
Teta
nocera
phyl
lop
hora
0.1
12
0.1
12
0.1
42
0.1
58
0.1
40
0.1
42
0.1
59
0.1
42
0.1
39
0.1
23
0.1
73
0.1
64
0.1
63
0.1
45
0.1
31
0.0
93
0.1
30
0.0
91
0.1
12
0.1
14
0.1
14
0.1
24
0.1
04
0.1
20
–0.0
11
0.0
13
0.0
15
0.0
19
0.0
20
0.0
16
26.
Teta
nocera
ple
beja
0.1
39
0.1
49
0.1
63
0.1
59
0.1
58
0.1
62
0.1
87
0.1
62
0.1
44
0.1
38
0.1
80
0.1
85
0.1
87
0.1
74
0.1
36
0.1
17
0.1
34
0.1
18
0.1
25
0.1
23
0.1
34
0.1
50
0.1
10
0.1
29
0.1
19
–0.0
09
0.0
14
0.0
17
0.0
17
0.0
11
27.
Teta
nocera
plu
mosa
0.1
51
0.1
47
0.1
49
0.1
49
0.1
48
0.1
45
0.1
72
0.1
45
0.1
41
0.1
56
0.1
71
0.1
72
0.1
68
0.1
64
0.1
53
0.1
44
0.1
31
0.1
42
0.1
50
0.1
07
0.1
25
0.1
62
0.1
05
0.1
13
0.1
40
0.1
42
–0.0
11
0.0
12
0.0
17
0.0
02
28.
Teta
nocera
rob
ust
a0.1
18
0.1
18
0.1
18
0.1
29
0.1
31
0.1
44
0.1
61
0.1
44
0.1
33
0.1
29
0.1
59
0.1
64
0.1
61
0.1
53
0.1
13
0.1
20
0.1
18
0.1
20
0.1
14
0.1
04
0.0
98
0.1
26
0.0
95
0.1
02
0.1
08
0.1
31
0.1
23
–0.0
17
0.0
21
0.0
14
29.
Teta
nocera
silv
atic
a0.1
47
0.1
35
0.1
37
0.1
42
0.1
45
0.1
59
0.1
68
0.1
59
0.1
39
0.1
58
0.1
58
0.1
76
0.1
85
0.1
64
0.1
57
0.1
38
0.1
56
0.1
36
0.1
42
0.1
18
0.1
23
0.1
56
0.1
09
0.1
32
0.1
30
0.1
44
0.1
39
0.1
14
–0.0
24
0.0
15
30.
Teta
nocera
valid
a0.1
35
0.1
31
0.1
57
0.1
60
0.1
53
0.1
61
0.1
74
0.1
61
0.1
54
0.1
31
0.1
71
0.1
71
0.1
70
0.1
65
0.1
32
0.1
11
0.1
04
0.1
11
0.1
24
0.1
08
0.0
92
0.1
43
0.1
02
0.1
16
0.1
03
0.1
19
0.1
36
0.1
17
0.1
38
–0.0
18
31.
Teta
nocera
vicin
a0.1
37
0.1
35
0.1
46
0.1
43
0.1
56
0.1
46
0.1
72
0.1
46
0.1
53
0.1
48
0.1
62
0.1
70
0.1
72
0.1
62
0.1
42
0.1
39
0.1
23
0.1
37
0.1
38
0.1
03
0.1
23
0.1
53
0.1
25
0.1
11
0.1
41
0.1
50
0.0
79
0.1
02
0.1
33
0.1
22
–
Low
er
left
,16S
rDN
Ap-d
ista
nce
s;u
pper
righ
t,28S
p-d
ista
nce
s.
Habitat correlated parallel evolution 1465
ª 2 0 0 6 T H E A U T H O R S 1 9 ( 2 0 0 6 ) 1 4 5 9 – 1 4 7 4
J O U R N A L C O M P I L A T I O N ª 2 0 0 6 E U R O P E A N S O C I E T Y F O R E V O L U T I O N A R Y B I O L O G Y
Tab
le4
Pair
wis
eu
nco
rrect
ed
p-d
ista
nce
sbetw
een
scio
myzi
dsp
eci
es
appeari
ng
inTable
1.
Sp
ecie
s1
23
45
67
89
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
1.
Atr
ichom
elin
ap
ub
era
–0.1
14
0.1
88
0.1
69
0.2
35
0.1
97
0.1
97
0.1
99
0.2
34
0.2
35
0.1
97
0.1
91
0.1
87
0.2
23
0.2
70
0.2
26
0.2
57
0.2
32
0.2
48
0.2
37
0.2
20
0.2
59
0.2
09
0.2
37
0.2
38
0.2
38
0.2
05
0.1
84
0.2
33
0.2
74
0.2
35
2.
Scio
myz
asi
mp
lex
0.1
22
–0.2
08
0.1
88
0.2
35
0.2
15
0.2
08
0.2
14
0.2
30
0.2
32
0.2
00
0.2
15
0.2
18
0.2
36
0.2
65
0.2
29
0.2
71
0.2
35
0.2
68
0.2
46
0.2
35
0.2
68
0.2
24
0.2
51
0.2
59
0.2
68
0.2
09
0.1
94
0.2
42
0.2
65
0.2
33
3.
Elg
iva
connexa
0.1
72
0.1
78
–0.1
82
0.2
02
0.1
96
0.2
02
0.1
94
0.2
36
0.2
23
0.2
08
0.2
14
0.1
81
0.2
06
0.2
35
0.2
20
0.2
18
0.2
18
0.2
26
0.2
07
0.1
97
0.2
60
0.1
85
0.2
34
0.2
31
0.2
40
0.1
96
0.1
99
0.2
11
0.2
44
0.2
24
4.
Elg
iva
solic
ita0.1
66
0.1
63
0.1
68
–0.2
00
0.2
02
0.1
82
0.2
03
0.2
38
0.2
21
0.1
81
0.1
72
0.1
79
0.1
84
0.2
52
0.2
15
0.2
51
0.2
20
0.2
27
0.2
29
0.2
03
0.2
44
0.2
00
0.2
22
0.2
29
0.2
49
0.1
96
0.1
82
0.2
26
0.2
44
0.2
18
5.
Hed
ria
mix
ta0.1
96
0.1
80
0.1
78
0.1
76
–0.2
11
0.1
90
0.2
09
0.2
63
0.2
33
0.2
12
0.2
27
0.2
21
0.1
84
0.2
59
0.2
36
0.2
62
0.2
30
0.2
68
0.2
43
0.2
36
0.2
59
0.2
30
0.2
59
0.2
49
0.2
61
0.2
30
0.2
12
0.2
56
0.2
53
0.2
30
6.
Lim
nia
bosc
i0.1
81
0.1
73
0.1
83
0.1
84
0.1
84
–0.1
93
0.0
01
0.2
41
0.2
14
0.2
15
0.2
23
0.2
03
0.2
02
0.2
59
0.2
35
0.2
51
0.2
39
0.2
48
0.2
55
0.2
24
0.2
63
0.2
32
0.2
69
0.2
41
0.2
53
0.2
26
0.2
29
0.2
54
0.2
65
0.2
39
7.
Lim
nia
ott
aw
ensi
s0.1
68
0.1
59
0.1
80
0.1
56
0.1
73
0.1
65
–0.1
91
0.2
22
0.2
12
0.1
79
0.1
99
0.1
96
0.1
42
0.2
49
0.2
26
0.2
54
0.2
27
0.2
21
0.2
25
0.1
85
0.2
56
0.1
90
0.2
11
0.2
20
0.2
67
0.1
79
0.1
72
0.2
11
0.2
33
0.1
93
8.
Lim
nia
sand
ova
lensi
s0.1
83
0.1
76
0.1
87
0.1
84
0.1
85
0.0
05
0.1
68
–0.2
39
0.2
12
0.2
17
0.2
21
0.2
02
0.2
03
0.2
61
0.2
36
0.2
53
0.2
41
0.2
47
0.2
53
0.2
23
0.2
62
0.2
30
0.2
68
0.2
40
0.2
52
0.2
24
0.2
27
0.2
56
0.2
63
0.2
38
9.
Renocera
am
and
a0.2
12
0.2
01
0.2
10
0.2
10
0.2
09
0.2
24
0.2
00
0.2
23
–0.2
38
0.2
29
0.2
20
0.2
10
0.2
45
0.2
70
0.2
36
0.2
48
0.2
35
0.2
54
0.2
34
0.2
08
0.2
56
0.2
15
0.2
28
0.2
44
0.2
66
0.2
42
0.2
26
0.2
51
0.2
47
0.2
47
10.
Renocera
johnso
ni
0.2
04
0.1
91
0.1
97
0.1
84
0.2
05
0.1
90
0.1
84
0.1
90
0.2
27
–0.2
20
0.2
32
0.2
26
0.2
27
0.2
61
0.2
32
0.2
42
0.2
38
0.2
44
0.2
42
0.2
42
0.2
72
0.2
24
0.2
54
0.2
45
0.2
65
0.2
24
0.2
11
0.2
32
0.2
54
0.2
30
11.
Sep
ed
on
arm
ipes
0.1
77
0.1
77
0.1
86
0.1
79
0.1
99
0.1
89
0.1
56
0.1
94
0.2
12
0.1
95
–0.1
82
0.1
67
0.2
03
0.2
59
0.2
23
0.2
72
0.2
27
0.2
21
0.2
37
0.2
30
0.2
36
0.2
00
0.2
28
0.2
08
0.2
50
0.2
02
0.2
00
0.2
08
0.2
45
0.2
21
12.
Sep
ed
on
fusc
ipennis
0.1
84
0.1
61
0.1
87
0.1
73
0.1
98
0.1
95
0.1
61
0.1
94
0.2
12
0.1
94
0.1
51
–0.1
84
0.2
05
0.2
53
0.2
30
0.2
60
0.2
35
0.2
36
0.2
26
0.2
16
0.2
47
0.1
93
0.2
11
0.2
41
0.2
34
0.2
03
0.1
85
0.2
35
0.2
62
0.2
15
13.
Sep
ed
on
pra
em
iosa
0.1
88
0.1
84
0.1
90
0.1
79
0.2
00
0.1
93
0.1
61
0.1
95
0.2
15
0.2
00
0.1
47
0.1
60
–0.2
33
0.2
56
0.2
32
0.2
54
0.2
35
0.2
30
0.2
29
0.2
24
0.2
65
0.1
88
0.2
32
0.2
40
0.2
64
0.2
09
0.2
03
0.2
21
0.2
56
0.2
17
14.
Try
peto
pte
racanad
ensi
s0.1
98
0.1
86
0.1
91
0.1
79
0.1
87
0.1
80
0.1
51
0.1
80
0.2
25
0.2
02
0.2
04
0.1
98
0.1
98
–0.2
44
0.2
21
0.2
69
0.2
21
0.2
50
0.2
44
0.1
93
0.2
72
0.2
11
0.2
37
0.2
38
0.2
46
0.2
08
0.1
97
0.2
14
0.2
51
0.2
06
15.
Try
peto
pte
raarr
ogans
0.2
20
0.2
08
0.2
12
0.2
14
0.2
17
0.2
24
0.2
05
0.2
21
0.2
36
0.2
27
0.2
27
0.2
11
0.2
25
0.2
16
–0.2
38
0.2
62
0.2
40
0.2
80
0.2
61
0.2
52
0.2
71
0.2
49
0.2
63
0.2
64
0.2
48
0.2
45
0.2
53
0.2
50
0.2
82
0.2
74
16.
Try
peto
pte
rab
erg
i0.1
99
0.1
95
0.1
88
0.1
78
0.1
91
0.1
99
0.1
92
0.1
98
0.2
17
0.1
88
0.1
99
0.1
70
0.1
94
0.2
08
0.2
07
–0.2
45
0.0
10
0.2
08
0.2
10
0.1
94
0.2
60
0.2
14
0.2
35
0.2
20
0.2
11
0.1
82
0.2
15
0.1
93
0.2
36
0.2
08
17.
Try
peto
pte
racla
ra0.2
34
0.2
13
0.2
13
0.2
03
0.2
07
0.2
21
0.2
11
0.2
21
0.2
31
0.1
89
0.2
23
0.2
04
0.2
28
0.2
21
0.2
05
0.2
10
–0.2
41
0.2
45
0.2
40
0.2
45
0.2
57
0.2
23
0.2
49
0.2
45
0.2
53
0.2
44
0.2
50
0.2
51
0.2
21
0.2
47
18.
Try
peto
pte
rafe
rrugin
ea
0.2
01
0.1
92
0.1
89
0.1
79
0.1
94
0.1
97
0.1
92
0.1
96
0.2
20
0.1
89
0.2
00
0.1
73
0.1
96
0.2
11
0.2
10
0.0
11
0.2
10
–0.2
03
0.2
13
0.1
97
0.2
60
0.2
20
0.2
36
0.2
25
0.2
05
0.1
90
0.2
18
0.2
02
0.2
42
0.2
05
19.
Teta
nocera
fusc
inerv
is0.2
04
0.1
93
0.1
93
0.1
88
0.1
96
0.1
85
0.1
83
0.1
85
0.2
28
0.2
10
0.2
00
0.1
88
0.2
01
0.2
04
0.2
03
0.1
77
0.2
05
0.1
77
–0.2
25
0.2
12
0.2
26
0.2
29
0.2
26
0.2
04
0.2
51
0.1
93
0.2
06
0.2
32
0.2
50
0.1
96
20.
Teta
nocera
kert
esz
i0.2
18
0.2
13
0.1
93
0.1
93
0.1
94
0.2
10
0.2
00
0.2
13
0.2
17
0.2
03
0.2
11
0.1
98
0.2
18
0.2
19
0.2
18
0.1
97
0.1
91
0.1
97
0.1
87
–0.1
98
0.2
45
0.1
99
0.1
36
0.2
25
0.2
46
0.1
99
0.2
08
0.2
23
0.2
44
0.2
23
21.
Teta
nocera
latifi
bula
0.2
04
0.2
04
0.1
86
0.1
85
0.1
83
0.1
92
0.1
75
0.1
91
0.2
06
0.1
94
0.1
93
0.1
93
0.2
03
0.2
04
0.2
06
0.1
68
0.1
89
0.1
72
0.1
87
0.1
68
–0.2
35
0.1
61
0.1
96
0.2
11
0.2
38
0.1
66
0.1
87
0.1
96
0.2
38
0.1
91
22.
Teta
nocera
mela
nost
igm
a0.2
58
0.2
43
0.2
34
0.2
30
0.2
31
0.2
34
0.2
40
0.2
38
0.2
62
0.2
24
0.2
58
0.2
43
0.2
53
0.2
42
0.2
13
0.2
29
0.2
17
0.2
29
0.2
26
0.2
24
0.2
26
–0.2
39
0.2
50
0.2
53
0.2
75
0.2
59
0.2
32
0.2
62
0.2
36
0.2
53
23.
Teta
nocera
meso
pora
0.1
90
0.1
97
0.1
88
0.1
81
0.1
87
0.1
98
0.1
80
0.1
97
0.2
07
0.1
89
0.1
94
0.1
86
0.1
97
0.2
04
0.2
16
0.1
81
0.1
99
0.1
79
0.1
86
0.1
76
0.1
62
0.2
34
–0.2
01
0.2
02
0.2
46
0.1
66
0.2
03
0.1
88
0.2
32
0.1
78
24.
Teta
nocera
monta
na
0.2
14
0.2
11
0.1
85
0.1
93
0.1
94
0.2
11
0.1
91
0.2
12
0.2
19
0.2
01
0.2
08
0.1
96
0.2
15
0.2
12
0.2
10
0.1
81
0.1
88
0.1
79
0.1
90
0.1
02
0.1
68
0.2
27
0.1
67
–0.2
17
0.2
69
0.1
90
0.2
11
0.2
10
0.2
56
0.2
22
25.
Teta
nocera
phyl
lop
hora
0.2
12
0.2
04
0.1
92
0.1
88
0.2
05
0.1
95
0.1
82
0.1
99
0.2
23
0.1
90
0.1
90
0.1
86
0.2
04
0.2
03
0.2
16
0.1
81
0.1
96
0.1
81
0.1
90
0.1
91
0.1
74
0.2
29
0.1
70
0.1
92
–0.2
50
0.1
98
0.2
14
0.1
95
0.2
39
0.2
13
26.
Teta
nocera
ple
beja
0.2
19
0.2
02
0.1
99
0.2
16
0.1
98
0.1
88
0.1
99
0.1
92
0.2
38
0.2
17
0.2
17
0.2
14
0.2
21
0.2
16
0.2
00
0.1
88
0.2
10
0.1
88
0.1
92
0.2
06
0.1
99
0.2
28
0.2
04
0.2
06
0.1
95
–0.2
41
0.2
49
0.2
34
0.2
69
0.2
56
27.
Teta
nocera
plu
mosa
0.1
97
0.1
86
0.1
82
0.1
82
0.1
91
0.1
88
0.1
81
0.1
90
0.2
13
0.1
92
0.1
91
0.1
88
0.1
93
0.2
04
0.2
16
0.1
70
0.2
01
0.1
71
0.1
92
0.1
86
0.1
63
0.2
27
0.1
62
0.1
74
0.1
82
0.1
99
–0.1
70
0.1
78
0.2
45
0.1
70
28.
Teta
nocera
rob
ust
a0.1
74
0.1
66
0.1
65
0.1
62
0.1
77
0.1
77
0.1
57
0.1
79
0.2
07
0.1
88
0.1
81
0.1
75
0.1
88
0.1
89
0.2
21
0.1
81
0.1
91
0.1
80
0.1
74
0.1
81
0.1
68
0.2
26
0.1
67
0.1
79
0.1
72
0.1
99
0.1
72
–0.2
08
0.2
21
0.1
66
29.
Teta
nocera
silv
atic
a0.1
85
0.1
72
0.1
70
0.1
70
0.1
79
0.1
88
0.1
61
0.1
90
0.2
13
0.1
86
0.1
86
0.1
90
0.1
84
0.1
87
0.2
03
0.1
80
0.2
08
0.1
79
0.1
79
0.1
79
0.1
85
0.2
21
0.1
75
0.1
84
0.1
84
0.2
01
0.1
79
0.1
59
–0.2
27
0.1
99
30.
Teta
nocera
valid
a0.2
19
0.1
95
0.2
00
0.1
96
0.2
00
0.2
00
0.1
91
0.2
00
0.2
27
0.1
92
0.2
19
0.1
95
0.2
16
0.2
16
0.2
07
0.1
94
0.1
95
0.1
95
0.1
90
0.1
96
0.2
01
0.2
23
0.1
86
0.1
87
0.1
88
0.1
95
0.1
94
0.1
95
0.1
95
–0.2
39
31.
Teta
nocera
vicin
a0.1
90
0.1
77
0.1
76
0.1
81
0.1
84
0.1
91
0.1
74
0.1
94
0.2
05
0.1
90
0.1
89
0.1
84
0.1
86
0.2
02
0.2
09
0.1
77
0.2
02
0.1
77
0.1
96
0.1
90
0.1
62
0.2
20
0.1
74
0.1
77
0.1
81
0.2
09
0.1
51
0.1
76
0.1
75
0.1
86
–
Low
er
left
,C
OI
p-d
ista
nce
s;u
pper
righ
t,C
OII
p-d
ista
nce
s.
1466 E. G. CHAPMAN ET AL.
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To further test the robustness of our phylogenetic
inferences, we performed a variety of topology tests
comparing the best unconstrained tree topology with a
tree in which the terrestrial Tetanocera were constrained to
be monophyletic. The best ML constrained tree was
identical to the unconstrained ML topology, except for
the arrangement of Tetanocera species (tree not shown).
All tests strongly rejected the null hypothesis that the
difference between the two trees was no greater than
expected from sampling error (P < 0.0001 for all; Table 5).
Habitat-morphology correlations
Figure 5 shows four mirror trees visualizing the correla-
tions between larval habitat (left side of each tree) and
each of four morphological characters: (i) larval colour
(Fig. 5a), (ii) float hair length (Fig. 5b), (iii) ventrolateral
lobe length ratios (Fig. 5c), (iv) and orientation of the
posterior spiracular disc (Fig. 5d), each on the right side
of their respective trees. The parsimony-inferred ances-
tral character states for Tetanocera are (i) aquatic habitat,
(ii) dark colour, (iii) long float hairs, (iv) relatively long
ventrolateral lobes and (v) lengthened last abdominal
segment with upturned spiracular disc (Fig. 5; the
orientation of the spiracular disc in Tetanocera silvatica
could not be determined, therefore was coded as
unknown in Fig. 5d). Thus, the initial direction of change
for the polarized characters within Tetanocera was from (i)
aquatic to terrestrial habitat, (ii) dark to light colour, (iii)
long to short float hairs, (iv) from relatively long to
Fig. 3 Best tree topology (as judged by ML)
from a sample of 1001 trees from a Bayesian
analysis of the concatenated dataset, show-
ing posterior probabilities above the lines and
ML bootstrap and MP bootstrap values below
the lines, the latter in parentheses. Numbers
in parentheses after the taxon names indi-
cate how many specimens of each species
were sequenced and analysed. Genus
abbreviations from top to bottom: Sciomyz-
ini: Atrichomelina (A); Sciomyza (S); Tetan-
ocerini: Sepedon (S); Elgiva (E); Hedria (H);
Limnia (L); Trypetoptera (T); Renocera (R);
Tetanocera (T).
Habitat correlated parallel evolution 1467
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relatively short ventrolateral lobes and (v) from upturned
to rear-facing spiracular disc.
The trees in Fig. 5 illustrate the relatively tight corre-
lations we observed between habitat and morphology.
Dark colour is perfectly correlated with aquatic habitat
within Tetanocera; the outgroup genus Sepedon is the
exception (Fig. 5a). The only exception to a perfect
correlation between aquatic habitat and long float hairs
occurs if Tetanocera plumosa (Fig. 5b) is considered aqua-
tic. There is a perfect correlation between aquatic habitat
and relatively long ventrolateral lobes throughout the
entire phylogeny (Fig. 5c). Finally, the orientation of the
spiracular disc has two mismatches among the outgroup
genera (Hedria and Renocera) and a single mismatch
within Tetanocera (T. fuscinervis; Fig. 5d).
The correlated evolution tests between habitat and the
above four morphological characters all yielded signifi-
cant correlations (P £ 0.01), as did tests of correlations
among morphological characters (P £ 0.02; Table 6). All
correlations were significant, and all remained significant
after applying the sequential Bonferroni test. Further-
more, of the 18 possible temporal order tests among the
four morphological characters (coding T. silvatica with or
without an upturned spiracular disc, and examining both
the entire phylogeny and the Tetanocera portion), only
one was significant: cuticular pigmentation is reduced
before float hair length is shortened on the entire
phylogeny (v21 ¼ 4.76, P ¼ 0.029). Of the 20 possible
temporal order tests between habitat and the four
morphological characters (coding T. silvatica with or
without an upturned spiracular disc, coding T. plumosa
aquatic or terrestrial, and examining both the entire
phylogeny and the Tetanocera portion), only one was
significant: habitat changes from aquatic to terrestrial
before cuticular pigmentation is reduced on the entire
phylogeny if T. plumosa is coded as terrestrial (v21 ¼ 5.17,
P ¼ 0.023). Neither of these results remained significant
after applying the sequential Bonferroni test.
Discussion
The results of our phylogenetic and correlated evolution
analyses indicate that larval habitat changes are robustly
linked to larval pigmentation, float hair length, spiracular
disc orientation, and ventrolateral lobe length. These
analyses are consistent with the hypothesis that terrest-
rial habitat preference and the morphological character
states typical of terrestrial Tetanocera species all arose at
least three times independently (Figs 3 and 4). Knutson
& Vala (2002) conclude ‘terrestrial behaviour and mor-
phology in the Tetanocerini are apomorphic features of
that tribe’. Our species-level phylogeny, ancestral char-
acter state optimizations, and topology tests clearly
support this conclusion with respect to Tetanocera.
Habitat–morphology correlations
Because our optimization analyses (Figs 3 and 4) indicate
at least three independent transitions from aquatic to
terrestrial larval habitat within Tetanocera, and all corre-
lated evolution tests were significant, we are able to infer
that changes in habitat preference were typically accom-
panied by morphological transitions in four larval char-
acters. All four of these morphological character state
changes can be viewed as transitions to more vestigial
conditions, as they are either a reduction of cuticular
pigmentation or a reduction in the size of the structure. In
his comprehensive work on the breeding habits and
immature stages of cyclorrhaphan Diptera (the division to
which the Sciomyzidae belongs), Ferrar (1987) stated that
Fig. 4 Maximum likelihood optimizations of
habitat analysed with MESQUITEMESQUITE: (a) asym-
metrical two-parameter model, (b) MK1
model. An asterisk (*) to the left of a node
indicates significance (ancestral states with
raw likelihood scores >2.0).
1468 E. G. CHAPMAN ET AL.
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Fig. 5 Mirror trees showing the correlations between habitat and (a) larval colour, (b) float hair length, (c) ventrolateral lobe ratios and (d)
orientation of the posterior spiracular disc. Character optimizations done using equally weighted parsimony methods in MESQUITEMESQUITE.
Table 5 Results of the parsimony-based Kishino-Hasegawa (KH), Templeton (Wilcoxon signed-ranks) and winning sites (sign) tests calculated
using PAUPPAUP*, and the likelihood-based approximately unbiased (AU), Kishino–Hasegawa (KH), Shimodiara-Hasegawa (SH), weighted Kishino-
Hasegawa (WKH), and weighted Shimodiara-Hasegawa (WSH) tests calculated using CONSEL. Trees compared were the best topology from the
unconstrained Bayesian analysis vs. an analysis where the terrestrial Tetanocera were constrained to be monophyletic.
Tree
Test
Length Difference KH Templeton Winning sites
Parsimony-based tests
Unconstrained 8506
Terrestrials constrained 8719 213 P < 0.0001 P < 0.0001 P < 0.0001
)Ln L Difference AU KH SH WKH WSH
Likelihood-based tests
Unconstrained )37275.65
Terrestrials constrained )37587.04 311.39 P ¼ 3e)22 P ¼ 0 P ¼ 0 P ¼ 0 P ¼ 0
Habitat correlated parallel evolution 1469
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‘I still believe that to some extent one can draw conclu-
sions on [phylogenetic] relationship from immature
stages, but I now consider that larval morphology is
predominantly functional and that larvae show a number
of interesting examples of parallel evolution’. Our analy-
ses of Tetanocera phylogenesis and character evolution,
which quite strikingly corroborate Ferrar’s conclusion,
indicate at least three instances where larval morphology
changed in the same way during habitat shifts.
Table 7 lists the character states of the Tetanocera
species with known habitat preferences that we were
unable to include in the analyses presented herein. Upon
examination of these data, it is clear that no matter
where these species eventually insert into the phylogeny
of Tetanocera, they will only render our highly significant
habitat–morphology correlations stronger. Furthermore,
given the high nodal support values for the three
Tetanocera subclades and the highly significant results of
the constrained/unconstrained topology tests, it seems
very unlikely that the addition of these taxa would
rearrange the phylogeny such that the aquatic and/or
terrestrial species would form monophyletic groups.
Thus, the parallel evolution of terrestrial habit and
associated morphological changes appears to be the best
explanation for the observed character distributions
within Tetanocera.
Because of the tight correlations among the morpho-
logical characters examined (i.e. all temporal order tests
were nonsignificant after applying the sequential Bon-
ferroni test), we were not able to distinguish among three
possible scenarios regarding these correlations: (i) plei-
otropy, (ii) indirect selection via another trait, or (iii)
concerted evolution. However, the two habitat–mor-
phology mismatches within Tetanocera may be indicative
of the general ordering of larval morphological character
state transitions or of current adaptation to novel
habitats. Tetanocera plumosa has larvae that are principally
aquatic but can also be found in shoreline (¼terrestrial)
situations (Foote, 1961). This species exhibits one mor-
phological character state (short float hairs) that is
typically found in terrestrial larvae. Tetanocera fuscinervis,
a shoreline predator, has an upturned spiracular disc,
Table 6 Tests for correlated evolution using DISCRETEDISCRETE (omnibus test) showing likelihood ratios (LR) and associated P-values for each test.
Habitat–morphology correlations Habitat vs.
Scenario Pigmentation Float hair length Ventrolateral lobe length Spiracular disc orientation
Tetanocera plumosa coded aquatic
Entire phylogeny LR ¼ 10.40, P < 10)6 LR ¼ 13.77, P < 10)6 LR ¼ 13.44, P < 10)6 LR ¼ 10.11, P < 10)6
Tetanocera portion only LR ¼ 10.59, P < 10)6 LR ¼ 8.09, P < 10)6 LR ¼ 10.59, P < 10)6 LR ¼ 8.06, P < 10)6
T. plumosa coded terrestrial
Entire phylogeny LR ¼ 6.86, P < 10)6 LR ¼ 16.21, P < 10)6 LR ¼ 10.42, P < 10)6 LR ¼ 8.30, P < 10)6
Tetanocera portion only LR ¼ 8.02, P < 10)6 LR ¼ 9.86, P < 10)6 LR ¼ 8.11, P < 10)6 LR ¼ 6.57, P < 10)6
T. silvatica with upturned disc
Entire phylogeny N/A N/A N/A LR ¼ 6.70, P £ 0.01
Tetanocera portion only N/A N/A N/A LR ¼ 5.34, P £ 0.01
T. silvatica with rear-facing disc
Entire phylogeny N/A N/A N/A LR ¼ 8.30, P < 10)6
Tetanocera portion only N/A N/A N/A LR ¼ 6.37, P < 10)6
Morphology–morphology correlations
Scenario Pigmentation Float hair length Ventrolateral lobe length
Float hair length
Entire phylogeny LR ¼ 10.46, P < 10)6 – –
Tetanocera portion only LR ¼ 8.09, P < 10)6 – –
Ventrolateral lobe length
Entire phylogeny LR ¼ 11.62, P < 10)6 LR ¼ 10.42, P < 10)6 –
Tetanocera portion only LR ¼ 10.43, P < 10)6 LR ¼ 8.11, P < 10)6 –
Spiracular disc orientation
T. silvatica with upturned disc
Entire phylogeny LR ¼ 6.03, P < 10)6 LR ¼ 6.70, P < 10)6 LR ¼ 8.38, P < 10)6
Tetanocera portion only LR ¼ 6.37, P < 10)6 LR ¼ 5.33, P £ 0.02 LR ¼ 6.38, P £ 0.01
T. silvatica with rear-facing disc
Entire phylogeny LR ¼ 8.33, P < 10)6 LR ¼ 8.30, P < 10)6 LR ¼ 8.38, P < 10)6
Tetanocera portion only LR ¼ 8.08, P < 10)6 LR ¼ 6.57, P < 10)6 LR ¼ 8.07, P < 10)6
Top half, correlation tests between habitat (aquatic or terrestrial) and four morphological characters under a number of different possible scenarios.
Correlated evolution tests were conducted on both the entire phylogeny and the Tetanocera portion only. Because T. plumosa can be found in both
aquatic and shoreline habitats, both scenarios were tested. Because the spiracular disc orientation of T. silvatica could not be determined, both
character states were tested. Each test was repeated to insure accuracy; Bottom half, correlation tests between morphological characters.
1470 E. G. CHAPMAN ET AL.
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which is the typical character state in aquatic species.
These two exceptions to the rule could represent the two
ends of an aquatic-to-terrestrial transition series. For
example, the reduction of float hair length and the
evolution of a posterior-facing spiracular disc could be
the first and last, respectively, of the four characters to
change during the evolutionary transition to a terrestrial
larval habit in Tetanocera. This interpretation suggests that
the larval stage of T. plumosa may be in the initial phase of
transitioning to land and thus the short float hairs
represent an adaptation to the much drier shoreline
habitat. Furthermore, T. fuscinervis larvae could be
viewed as being in the penultimate phase of transitioning
to land with the upturned spiracular disc being viewed as
historical baggage. The observation that the two, possibly
transitional, Tetanocera species possessing mismatched
character states occur in shoreline situations is consistent
with a stepping stone role for this habitat in aquatic to
terrestrial habitat transitions. Alternatively, these hab-
itat–morphology mismatches may represent currently
advantageous characteristics for specialized ecological
circumstances. This hypothesis seems reasonable due to
the ecotonal nature of the shoreline habit in these two
species. For example, the upturned spiracular disc in
T. fuscinervis could allow this species to breathe during
periodic flooding of its shoreline habitat, enabling it to
swim back to the shoreline. Ongoing, taxonomically
more inclusive, phylogenetic/PCM studies within the
Sciomyzidae, combined with evaluations of current
utility for the mismatched character states within Tetano-
cera, offer possible means to evaluate these hypotheses.
Both ancestral character state optimization methods
suggested one reversal from terrestrial to aquatic habit in
Tetanocera (Figs 4 and 5). Three parallel shifts to terrest-
rial habit plus one reversal is a more parsimonious
explanation than the five parallel shifts to terrestrial habit
that would be required if the ancestor to the phyllophora-
valida clade were aquatic. Considering that the four
morphological character states of the two species in
question (T. ferruginea and T. bergi) closely resemble those
of other aquatic species, this habitat reversal suggests that
this lineage, minimally, reacquired cuticular pigmenta-
tion, long float hairs and long ventrolateral lobes. As a
lengthened last abdominal segment with upturned spir-
acular disc occurs in the extant shoreline-inhabiting
T. fuscinervis (the sister taxon to T. bergi + T. ferruginea), it
may be that the T. ferruginea + T. bergi lineage moved to
the shoreline and then back into the water without ever
changing this character. Whiting et al. (2003) demon-
strated that fully developed wings re-evolved in as many
as four independent lineages of stick insects. His study
demonstrated that a complex structure such as wings,
requiring interactions between nerves, muscles, sclerites,
and wing blades, could be lost and subsequently reac-
quired. In this light, the reacquisition of aquatic habitat-
associated morphologies in Tetanocera is not surprising,
especially if the genes responsible for the formation of
these traits are not functionally ‘degraded’ during and
after previous habitat transitions.
Phylogenetic niche conservatism
Pigmented cuticle, long float hairs, long ventrolateral
lobes, and a lengthened last abdominal segment with an
upturned spiracular disc are the plesiomorphic character
states for Tetanocera (Fig. 5a–d). There are two possible
explanations for the retention of plesiomorphic traits
within a lineage: (i) phylogenetic constraint (McKitrick,
1993; Brooks & McLennan, 1994) or (ii) phylogenetic
niche conservatism (Harvey & Pagel, 1991). McKitrick
(1993) defined phylogenetic constraint as ‘any result or
component of the phylogenetic history of a lineage that
prevents an anticipated course of evolution in that
lineage’. Phylogenetic constraint may result from the
lack of genetic variation for a given trait, from coadap-
tation among traits that impose a genetic burden on the
trait of interest, or from developmental correlations
among traits (Wagner, 1995; Givnish, 1997). These
constraints often result in a lag between environmental
shifts and phenotypic change (Johnson et al., 1999). On
the other hand, phylogenetic niche conservatism
involves the action of stabilizing selection on phenotypic
traits when ancestral ecological conditions are main-
tained within a lineage (Lord et al., 1995). Given that (i)
there was a minimum of three independent shifts to
terrestrial habit within Tetanocera, each accompanied by
Table 7 Character states of the Tetanocera species with known
habitat preference not included in the phylogeny presented herein.
Length Pigmentation
Float hair
length
Ventrolateral
lobe length
Spiracular
disc
orientation
Aquatic species
T. annae 0 0 0 0
T. loewi 0 0 0 0
T. obtusifibula 0 0 0 0
T. punctifrons 1 0 0 0
T. soror 0 0 0 0
T. spreta 0 0 0 0
T. stricklandi 0 0 0 0
Terrestrial species
T. elata 1 1 1 1
T. hyalipennis 1 1 1 ?
T. oxia 1 1 1 1
T. rotundicornis 1 1 1 1
T. spirifera 1 1 1 1
State 0, darkly pigmented, long float hairs, long ventrolateral lobes,
and lengthened terminal abdominal segment with upturned disc;
State 1, unpigmented (appearing white), very short float hairs, short
ventrolateral lobes, and terminal abdominal segment not length-
ened, disc not upturned. Data from Foote (1961); unpublished data)
and Knutson (1963).
Habitat correlated parallel evolution 1471
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the same changes in these four morphological characters
(clearly demonstrating the ability to evolve), (ii) all
temporal order tests of habitat and morphology were
nonsignificant and (iii) each plesiomorphic character
state is apparently fundamental to aquatic existence, it
seems apparent that phylogenetic niche conservatism,
rather than phylogenetic constraint, continues to main-
tain these ancestral morphologies in the extant aquatic
Tetanocera species.
Adaptation to terrestrial existence
Multiple parallel morphological character state changes
accompanying a given habitat shift can be considered as
evidence that the characters are adaptive (Baum &
Larson, 1991; Brooks & McLennan, 1991,1994; Givnish,
1997; Patterson & Givnish, 2002). We are interpreting
these multiple parallel changes in Tetanocera larval
morphology, which are significantly correlated with
habitat, as evidence consistent with an adaptation hypo-
thesis. Extrapolation from a correlative to a cause-and-
effect relationship is difficult in historical evolutionary
studies as random associations of character states can
potentially account for any observed pattern. However,
we hypothesize that the inferred changes in the four
morphological characters that accompanied the three
transitions from the aquatic to the terrestrial habitat
represent adaptive peak shifts, as each of the aquatic
character states may typically be selected against in the
terrestrial setting (e.g. Harvey & Pagel, 1991, Martins,
2000). For instance, the long ventrolateral lobes and
upturned posterior spiracular discs of aquatic Tetanocera
larvae may generally be impediments to prey-seeking
movements in the vegetative tangles of the terrestrial
habitat. An alternative cause-and-effect relationship, in
which changes in larval morphology caused habit
transitions, seems highly unlikely due to the physiologi-
cal requirements of aquatic sciomyzid larvae.
Studies of Anolis lizards in the Greater Antilles demon-
strated that distinct lineages evolved similar morphologies
as they made similar habitat shifts on different islands
(Losos, 1992; Losos et al., 1994,1998). At least 17 parallel
habitat transitions resulted in similar communities on
each island. This landmark work demonstrated that
similar solutions to similar evolutionary problems can
be arrived at multiple times independently. Tetanocera
exhibits a comparable phenomenon in that multiple
lineages have transitioned to terrestrial larval foraging
during phylogenesis (Figs 3 and 4) with each transition
typically accompanied by the same four changes in larval
morphology. These derived character states likely repre-
sent adaptations to the terrestrial environment.
One of the interesting evolutionary questions gener-
ated by this study is ‘why did the larvae of multiple
Tetanocera lineages leave the water for a terrestrial
existence?’ This is not a general evolutionary tendency
for the tribe as several tetanocerine genera have
exclusively aquatic larvae (e.g. Dictya, Elgiva, and Sepedo-
nea). There are biotic and abiotic factors that may have
been involved in these habitat transitions. Potential biotic
factors for the transition from the aquatic to the terrest-
rial larval habit in Tetanocera include the following: (i)
eliminating competition with other aquatic pulmonate
snail predators, (ii) escaping aquatic predators/parasi-
toids, (iii) compensating for prolonged declines in aquatic
pulmonate snail populations and (iv) low dispersal
ability. Very little is known about the current levels of
competition, predation, and dispersal ability, let alone
about the historical levels, that act or have acted upon
the larval stages of Tetanocera.
An abiotic factor that could influence transitions from
aquatic to terrestrial habitats is a generally drying
climate. This could markedly affect the fitness of aquatic
Tetanocera larvae directly by reducing the amount of
suitable aquatic habitat. Wiegmann et al. (2003) estima-
ted that the Schizophora [the dipteran subclade (series)
to which the Sciomyzidae belongs] arose between
142 and 70 mya with the oldest known fossil sciomyzid
dated to the Eocene/Oligocene epochs (55-24 mya;
Hennig, 1965) and the oldest known fossil Tetanocera
from the Oligocene epoch (34-24 mya; Theobald, 1937;
Forster, 1891). The time period between the beginning of
the Cenozoic era through the end of the Pliocene epoch
(65-5 mya) is generally characterized by an increasingly
cooler and drier climate. As wetlands began to dry (or at
least change from permanent to temporary wetlands),
sciomyzid lineages were likely pressured to cope with
such conditions, and some populations may have
responded by gradually shifting to more and more
terrestrial habitats. The multiple aquatic-to-terrestrial
larval habitat transitions identified herein for Tetanocera
may have occurred during this time period in response to
this general climatic trend. Additionally, because not all
tetanocerine genera display aquatic to terrestrial habitat
transitions (e.g. Dictya), factors intrinsic to Tetanocera may
also be potentiating the changes (e.g. dispersal ability).
However, lineages such as Dictya may have diversified
after the drying time period, but the lack of fossils for
such lineages prevents us from speculating further.
Subsequent phylogenetic/comparative investigations,
including those concentrating on dating the behavioural,
ecological, and morphological changes we have des-
cribed, will likely be of significant utility in further
elucidating the causal processes responsible for these
evolutionary transitions.
Acknowledgments
We thank Lita Greve-Jensen, Lloyd Knutson, Wayne
Mathis, Rory McDonnell, Joe Keiper, Ladislav Roller, and
Rudolph Rozkosny for donating specimens for this
project. We thank Diana Senyo, Judy Santmire, and
Jennifer Walker for helping with lab work. We thank
Bob Androw, Steve Chordas III, Laura Lawler-Chapman,
1472 E. G. CHAPMAN ET AL.
ª 2 0 0 6 T H E A U T H O R S 1 9 ( 2 0 0 6 ) 1 4 5 9 – 1 4 7 4
J O U R N A L C O M P I L A T I O N ª 2 0 0 6 E U R O P E A N S O C I E T Y F O R E V O L U T I O N A R Y B I O L O G Y
Joe Keiper, Austin Richards and Rob Roughley for
assistance in the field. This work was partially funded
by NSF grant DEB-0237175 (to W.R.H.), and by a Kent
State University Graduate Student Senate research grant.
We thank Ferenc DeSzalay, Joe Keiper, Patrick Lorch,
Austin Richards, Andrea Schwarzbach, and Jennifer
Walker for reviewing drafts of this manuscript. Finally,
we thank Allen Moore and the anonymous reviewer for
their comments on the manuscript.
References
Armbruster, W.S. 2002. Can indirect selection and genetic
context contribute to trait diversification? A transition-prob-
ability study of blossom-colour evolution in two genera.
J. Evol. Biol. 15: 468–486.
Baum, D.A. & Larson, A. 1991. Adaptation reviewed: a
phylogenetic methodology for studying character macroevo-
lution. Syst. Zool. 40: 1–18.
Brooks, D.L. & McLennan, D.A. 1991. Phylogeny, Ecology, and
Behavior: A Research Program in Comparative Biology. The
University of Chicago Press, Chicago, IL.
Brooks, D.L. & McLennan, D.A. 1994. Historical ecology as a
research programme: scope, limitations, and the future. In:
Phylogenetics and Ecology (P. Eggleton & R. Vane-Wright, eds),
pp. 1–27. Academic Press, London.
Collin, R. 2003. Phylogenetic relationships among calyptraeid
gastropods and their implications for the biogeography of
marine speciation. Syst. Biol. 52: 618–640.
Creer, S., Malhotra, A. & Thorpe, R.S. 2003. Assessing the
phylogenetic utility of four mitochondrial genes and a nuclear
intron in the Asian pit viper genus, Trimeresurus: separate,
simultaneous and conditional data combination analysis. Mol.
Biol. Evol. 20: 1240–1251.
Farris, J.S., Kallersjo, M., Kluge, A.G. & Bult, C. 1994. Testing
significance of incongruence. Cladistics. 10: 315–319.
Felsenstein, J. 1985a. Phylogenies and the comparative method.
Am. Nat. 125: 1–15.
Felsenstein, J. 1985b. Confidence limits on phylogenies: an
approach using the bootstrap. Evolution 39: 783–791.
Felsenstein, J. 2004. Inferring Phylogenies. Sinauer Assoc., Inc.,
Sunderland, MA.
Ferrar, P. 1987. A guide to the breeding habits and immature
stages of Diptera Cyclorrhapha (part 1: text), Sciomyzidae, p.
329–340 (part 2: figures), Sciomyzidae. In: Entomonograph.
(L. Lyneborg, ed.), pp. 815–827. Vol 8, E. J. Brill/Scandan-
avian Science Press, Leiden & Copenhagen.
Folmer, O., Black, M., Hoeh, W.R., Lutz, R. & Vrijenhoek, R.
1994. DNA primers for amplification of mitochondrial
cytochrome c oxidase subunit I from diverse metazoan
invertebrates. Mol. Mar. Biol. Biotechnol. 3: 294–299.
Foote, B.A. 1959. Biology and life history of the snail-killing flies
belonging to the genus Sciomyza Fallen (Diptera). Ann. Ento-
mol. Soc. Am. 52: 31–43.
Foote, B.A. 1961. Biology and Immature Stages of the Snail-
killing Flies Belonging to the Genus Tetanocera (Diptera:
Sciomyzidae), PhD thesis. Cornell University, Ithaca, NY.
Foote, B.A. 1971. Biology of Hedria mixta (Diptera: Sciomyzi-
dae). Ann. Entomol. Soc. Am. 64: 931–941.
Foote, B.A. 1976. Biology and larval feeding habits of three
species of Renocera (Diptera: Sciomyzidae) that prey on
fingernail clams (Mollusca: Sphaeriidae). Ann. Entomol. Soc.
Am. 69: 121–133.
Foote, B.A. 1996a. Biology and immature stages of snail-killing
flies belonging to the genus Tetanocera (Insecta: Diptera:
Sciomyzidae). 1. Introduction and life histories of predators
of shoreline snails. Ann. Carnegie Mus. 65: 1–12.
Foote, B.A. 1996b. Biology and immature stages of snail-killing
flies belonging to the genus Tetanocera (Insecta: Diptera:
Sciomyzidae). 2. Life histories of predators of snails of the
family Succineidae. Ann. Carnegie Mus 65: 153–166.
Foote, B.A. 1999. Biology and immature stages of snail-killing
flies belonging to the genus Tetanocera (Insecta: Diptera:
Sciomyzidae) 3. Life histories of the predators of aquatic
snails. Ann. Carnegie Mus. 68: 151–174.
Foote, B.A., Neff, S.E. & Berg, C.O. 1960. Biology and immature
stages of Atrichomelina pubera (Diptera: Sciomyzidae). Ann.
Entomol. Soc. Am. 53: 192–199.
Forster, B. 1891. Die Insekten des ‘Plattigen Steinmergels’ von
Brunstatt. Abh. Geol. Spez.-Karte Elsass-Lotheringen 3: 333–594.
Givnish, T.J. 1997. Adaptive radiation and molecular systemat-
ics: issues and approaches. In: Molecular Evolution and Adaptive
Radiation (T. J. Givnish & K. J. Systma, eds), pp. 1–54.
Cambridge University Press, Cambridge.
Harvey, P.H. & Pagel, M. 1991. The Comparative Method in
Evolutionary Biology. Oxford University Press, Oxford.
Hassanin, A. & Douzery, E. 2003. Molecular and morphological
phylogenies of Ruminantia and the alternative position of the
Moschidae. Syst. Biol. 52: 206–228.
Hendy, M.D., Steel, M.A., Penny, D. & Henderson, I.M. 1988.
Families of trees and consensus. In: Classification and Related
Methods of Data Analysis (H. H. Bock, ed.), pp. 355–362.
Elsevier, Amsterdam.
Hennig, W. 1965. Die Acalyptratae des baltischen Bernsteins
und ihre Bedeutung fur die Erforschung der phylogenetischen
Entwicklung dieser Dipteren-Gruppe. Stuttg. Beitr. Naturkd.
145: 1–215.
Holm, S. 1979. A simple sequentially rejective multiple test
procedure. Scand. J. Stat. 6: 65–70.
Huelsenbeck, J.P. & Ronquist, F. 2001. MrBayes: Bayesian
inference of phylogeny. Bioinformatics 17: 754–755.
Johnson, K.P., McKinney, F. & Sorenson, M.D. 1999. Phyloge-
netic constraint on male parental care in the dabbling ducks.
Proc. R. Soc. Lond. B 266: 759–763.
Jousselin, E., Rasplus, J.-Y. & Kjellberg, F. 2003. Convergence
and coevolution in a mutualism: evidence from a molecular
phylogeny of Ficus. Evolution 57: 1255–1269.
Kishino, H. & Hasegawa, M. 1989. Evaluation of the maximum
likelihood estimate of the evolutionary tree topologies from
DNA sequence data, and the branching order of the
Hominoidea. J. Mol. Evol. 29: 170–179.
Knutson, L.V. 1963. Biology and Immature Stages of Snail-
killing Flies of Europe (Diptera: Sciomyzidae). PhD thesis, pp.
390.Cornell University, Ithaca, NY.
Knutson, L.V. & Berg, C.O. 1964. Biology and immature stages
of snail-killing flies: the genus Elgiva (Diptera: Sciomyzidae).
Ann. Entomol. Soc. Am. 57: 173–192.
Knutson, L.V. & Vala, J.C. 2002. An evolutionary scenario of
Sciomyzidae and Phaeomyiidae (Diptera). Ann. Soc. Entomol.
France 38: 145–162.
Lord, J., Westoby, M. & Leishman, M. 1995. Seed size and
phylogeny in six temperate floras: constraints, niche con-
servatism, and adaptation. Am. Nat. 146: 349–364.
Habitat correlated parallel evolution 1473
ª 2 0 0 6 T H E A U T H O R S 1 9 ( 2 0 0 6 ) 1 4 5 9 – 1 4 7 4
J O U R N A L C O M P I L A T I O N ª 2 0 0 6 E U R O P E A N S O C I E T Y F O R E V O L U T I O N A R Y B I O L O G Y
Losos, J.B. 1992. The evolution of convergent structure in
Caribbean Anolis communities. Syst. Biol. 41: 403–420.
Losos, J.B., Duncan, J.I. & Schoener, T.W. 1994. Adaptation and
constraint in the evolution of specialization of Bahamian
Anolis lizards. Evolution 48: 1786–1798.
Losos, J.B., Jackman, T.R. Larson, A., de Qqeiroz, K. &
Rodriguez-Schettino, L. 1998. Contingincy and determinism
in replicated adaptive radiations of island lizards. Science 279:
2115–2118.
Maddison, W.P. 1990. A method for testing the correlated
evolution of two binary characters: are gains or losses
concentrated on certain branches of a phylogenetic tree?
Evolution 44: 539–557.
Maddison, D.R. 1991. The discovery and importance of multiple
islands of most-parsimonious trees. Syst. Zool. 40: 315–328.
Maddison, W.P. 2000. Testing character correlation using pair-
wise comparisons on a phylogeny. J. Theor. Biol. 202: 195–204.
Maddison, W.P. & Maddison, D.R. 2000. MacClade: Analysis of
Phylogeny and Character Evolution. Sinauer Association Inc.,
Sunderland, MA.
Maddison, W.P. & Maddison, D.R. 2003. Mesquite: a modular
system for evolutionary analysis. Version 1.05 http://mesquite-
project.org..
Marinoni, L. & Mathis, W.N. 2000. A cladistic analysis of
Sciomyzidae Fallen (Diptera). Proc. Entomol. Soc. Wash. 113:
162–209.
Martins, E.P. 2000. Adaptation and the comparative method.
Trends Ecol. Evol. 15: 296–299.
Martins, E.P. & Hansen, T.F. 1996. A microevolutionary link
between phylogenies and comparative data. In: New Uses for
New Phylogenies (P. H. Harvey, A. J. L. Brown, J. M. Smith & S.
Nee, eds), pp. 273–288. Oxford University Press, Oxford.
McKitrick, M.C. 1993. Phylogenetic constraint in evolutionary
theory: has it any explanatory power? Ann. Rev. Ecol. Syst. 24:
307–330.
Neff, S.E. & Berg, C.O. 1966. Biology and immature stages of
malacophagous Diptera of the genus Sepedon (Sciomyzidae).
Va. Agr. Exp. Stat. B. 566: 1–113.
Pagel, M. 1994. Detecting correlated evolution on phylogenies: a
general method for the comparative analysis of discrete
characters. Proc. Roy. Soc. Lond. B 255: 37–45.
Pagel, M. 1997. Inferring evolutionary processes from phyloge-
nies. Zool. Scr. 26: 331–348.
Pagel, M. 1999a. Inferring the historical patterns of biological
evolution. Nature 401: 877–884.
Pagel, M. 1999b. The maximum likelihood approach to recon-
structing ancestral character states on phylogenies. Syst. Biol.
48: 612–622.
Pagel, M. 2000. Discrete, Version 4.0. A computer program
distributed by the author.
Pagel, M. 2002. Multistate, Version 0.6. A computer program,
distributed by the author.
Pagel, M., Meade, A. & Barker, D. 2004. Bayesian estimation of
ancestral character states on phylogenies. Syst. Biol. 53: 673–
684.
Park, J-K. & O’Foighil, D. 2000. Sphaeriid and corbiculid clams
represent separate heterodont bivalve radiations into fresh-
water environments. Mol. Phylogenet. Evol. 14: 75–88.
Patterson, T.B. & Givnish, T.J. 2002. Phylogeny, concerted
convergence, and phylogenetic niche conservatism in the core
Liliales: insights from rbcL and ndhF sequence data. Evolution
56: 233–252.
Pauly, G.B., Hillis, D.M. & Cannatella, D.C. 2004. The history of
a Nearctic colonization: molecular phylogenetics and biogeo-
graphy of the Nearctic toads (Bufo). Evolution 58: 2517–2535.
Posada, D. & Crandall, K.A. 1998. Modeltest: testing the model
of DNA substitution. Bioinformatics 14: 817–818.
Prager, E.M. & Wilson, A.C. 1988. Ancient origin of lactabumin
from lysozyme: analysis of DNA and amino acid sequences.
J. Mol. Evol. 27: 326–335.
Rice, W.R. 1989. Analyzing tables of statistical tests. Evolution 43:
223–225.
Scheffer, S.J. & Wiegmann, B.M. 2000. Molecular phylogenetics
of the holly leafminers (Diptera: Agromyzidae: Phytomyza):
species limits, speciation, and dietary specialization. Mol.
Phylogenet. Evol. 17: 244–255.
Schwarz, M.P., Bull, N.J. & Cooper, S.J.B. 2003. Molecular
phylogenetics of allodapine Bees, with implications for the
evolution of sociality and progressive rearing. Syst. Biol. 52:
1–14.
Shimodaira, H. 2002. An approximately unbiased test of phy-
logenetic tree selection. Syst. Biol. 51: 492–508.
Shimodaira, H. & Hasegawa, M. 1999. Multiple comparisons of
log-likelihoods with applications to phylogenetic inference.
Mol. Biol. Evol. 16: 1114–1116.
Shimodaira, H. & Hasegawa, M. 2001. CONSEL: for assessing the
confidence of phylogenetic tree selection. Bioinformatics 17:
1246–1247.
Simon, C., Frati, F., Beckenbach, A., Crespi, B., Liu, H. & Flook,
P. 1994. Evolution, weighting, and phylogenetic utility of
mitochondrial gene sequences and a compilation of conserved
polymerase chain reaction primers. Ann. Entomol. Soc. Am. 87:
651–701.
Swofford, D.L. 2001. PAUP*. Phylogenetic Analysis Using Parsimony
(*and other Methods). Sinauer Associates, Sunderland, MA.
Templeton, A.R. 1983. Phylogenetic inference from restriction
endonuclease cleavage site maps with particular reference to
the humans and apes. Evolution 37: 221–244.
Theobald, N. 1937. Les insectes fossiles des terrains oligocenes de
France. G. Thomas, Nancy. 473 + [1] p.
Vermeij, G.J. & Dudley, R. 2000. Why are there so few
evolutionary transitions between aquatic and terrestrial
ecosystems. Biol. J. Linn. Soc. 70: 541–554.
Wagner, P.J. 1995. Testing evolutionary constraints hypotheses
with early Paleozoic gastropods. Paleobiology 21: 248–272.
Whiting, M.F., Bradler, S. & Maxwell, T. 2003. Loss and recovery
of wings in stick insects. Nature 421: 264–267.
Wiegmann, B.M., Yeates, D.K., Thorne, J.L. & Kishino, H. 2003.
Time flies, a new molecular time scale for brachyceran fly
evolution without a clock. Syst. Biol. 52: 745–756.
Received 21 November 2005; revised 3 March 2006; accepted 9 March
2006
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