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Molecular detection of nematicidal crystalliferousBacillus thuringiensis strains of Iran andevaluation of their toxicity on free-living andplant-parasitic nematodes
Gholamreza Salehi Jouzani, Ali Seifinejad, Abbas Saeedizadeh, Amin Nazarian,Majid Yousefloo, Saeed Soheilivand, Maryam Mousivand, Rosa Jahangiri,Mehdi Yazdani, Reza Maali Amiri, and Sepideh Akbari
Abstract: The characterization of nematode-effective strains and cry genes in the Iranian Bacillus thuringiensis (Bt) col-lection (70 isolates) is presented. Characterization was based on PCR analysis using 12 specific primers for cry5, cry6,cry12, cry13, cry14, and cry21 genes encoding proteins active against nematodes, crystal morphology, and protein bandpatterns as well as their nematicidal activity on root-knot nematode (Meloidogyne incognita) and two free-living nema-todes (Chiloplacus tenuis and Acrobeloides enoplus). PCR results with primers for these genes showed that 22 isolates(31.5%) contain a minimum of one nematode-active cry gene. Strains containing the cry6 gene were the most abundantand represent 22.8% of the isolates. Bt strains harboring cry14 genes were also abundant (14.2%). cry21 and cry5 geneswere less abundant, found in 4.2% and 2.8% of the strains, respectively. In total, six different nematode-active cry geneprofiles were detected in this collection. Four isolates did not show the expected PCR product size for cry5, cry6, andcry21 genes; they might contain potentially novel insecticidal crystal protein genes. Twenty-two Bt isolates containingnematode-active cry genes were selected for preliminary bioassays on M. incognita. Based on these bioassays, four isolateswere selected for detailed bioassays. Isolates YD5 and KON4 at 2 � 108 CFU/mL concentrations showed 77% and 81%toxicity on M. incognita, respectively. The free-living nematodes C. tenuis and A. enoplus were more susceptible and thehighest mortality was observed within 48 h of incubation at all of the concentrations tested. Maximum mortality was re-corded for isolates SN1 and KON4 at 2 � 108 CFU/mL concentrations and resulted in 68% and 77% adults deaths of C.tenuis and 68% and 72% for A. enoplus, respectively. Our results showed that PCR is a useful technique for toxicity pre-diction of nematicidal Bt isolates.
Key words: Acrobeloides enoplus, Bacillus thuringiensis, cry gene, Meloidogyne incognita, Chiloplacus tenuis.
Resume : La caracterisation de souches de Bacillus thuringiensis (Bt) efficaces contre les nematodes et des genes cry, apartir d’une collection de Bt iraniennes (70 isolats), est presentee. La caracterisation a ete realisee par une analyse en PCRa l’aide de 12 amorces specifiques aux genes cry5, cry6, cry12, cry13, cry14 et cry21 codant des proteines actives contreles nematodes, par l’analyse de la morphologie des cristaux et par les patrons de bandes proteiques, ainsi que par leur acti-vite nematicide envers un nematode des racines (Meloidogyne incognita) et deux nematodes libres (Chiloplacus tenuis etAcrobeloides enoplus). Les resultats en PCR avec les amorces correspondant a ces genes ont montre que 22 isolats(31,5 %) contiennent au moins un gene cry actif contre les nematodes. Les souches contenant le gene cry6 etaient les plusabondantes et representaient 22,8 % de tous les isolats. Les souches de Bt comportant le gene cry14 etaient aussi abondan-tes (14,2 %). Les genes cry21 et cry5 etaient les moins abondants, etant trouves chez 4,2 % et 2,8 % des souches, respecti-vement. Au total, six profils de genes cry actifs contre les nematodes ont ete detectes dans cette collection. Quatre isolatsne possedant aucun des produits PCR de tailles attendues pour les genes cry5, cry6 et cry 21 pourraient contenir de nou-veaux genes codant des proteines cristallines insecticides. Vingt-deux isolats de Bt contenant un gene cry actif contre les
Received 7 May 2008. Revision received 21 June 2008. Accepted 18 July 2008. Published on the NRC Research Press Web site atcjm.nrc.ca on 17 September 2008.
G. Salehi Jouzani,1 A. Seifinejad, A. Nazarian, S. Soheilivand, M. Mousivand, R. Jahangiri, and S. Akbari. Department ofMicrobial Biotechnology and Biosafety, Agricultural Biotechnology Research Institute of Iran, Mahdasht Road, P.O. Box 21525-1897,Karaj, Iran.A. Saeedizadeh and M. Yousefloo. Department of Plant Protection, Faculty of Horticultural Sciences and Plant Protection, UniversityCollege of Agriculture and Natural Resources, University of Tehran, Karaj, Iran.M. Yazdani and R.M. Amiri. Department of Agronomy and Plant Breeding, Faculty of Agronomy and Animal Sciences, UniversityCollege of Agriculture and Natural Resources, University of Tehran, Karaj, Iran.
1Corresponding author (e-mail: [email protected]).
812
Can. J. Microbiol. 54: 812–822 (2008) doi:10.1139/W08-074 # 2008 NRC Canada
nematodes ont ete choisis pour realiser des essais preliminaires envers M. icognita. A partir de ces essais, quatre de cesisolats ont ete choisis pour des essais biologiques detailles. Les isolats YD5 et KON4 utilises a des concentrations de 2 �108 CFU/mL etaient toxiques a 77 % et 81 % respectivement envers M. incognita. Les nematodes libres C. tenuis et A.enoplus etaient plus sensibles, la mortalite la plus forte etant observee en moins de 48 h d’incubation a toutes les concen-trations testees. La mortalite maximale a ete enregistree avec les isolats SN1 et KON4 a des concentrations de 2 �108 CFU/mL qui avaient cause 68 % et 77 % de mortalite chez C. tenuis adulte et 68 % et 72 % de mortalite chez A. eno-plus, respectivement. Nous resultats demontrent que la PCR est une technique utile pour predire la toxicite d’isolats de BTnematicides.
Mots-cles : Acrobeloides enoplus, Bacillus thuringiensisi, genes cry, Meloidogynes incognita, Chiplacus tenuis.
[Traduit par la Redaction]
______________________________________________________________________________________
IntroductionPlant-parasitic nematodes are found as pests of crops
throughout the world with many having a severe economiceffect. The cost imparted on world agriculture by plant-parasitic nematodes was estimated to be around US$125 bil-lion in 2003 (Chitwood 2003). The most economically im-portant species are the sedentary endoparasites of the genusMeloidogyne, also called root-knot nematodes because oftheir characteristic galling effect on roots (Dubreuil et al.2007), and the genera Heterodera and Globodera (cyst nem-atodes) (Lilley et al. 2007).
Biological control of plant-parasitic nematodes has longbeen considered as an alternative to nematicides, especiallybecause of the environmental and health concerns associatedwith these chemicals. In the past, research into the biologi-cal control of plant-parasitic nematodes has focused mainlyon predatious (e.g., nematophagous fungi) and parasitic(e.g., Pasteuria penetrans) microorganisms (Aalten et al.1998; Khan et al. 2003; Castillo et al. 2006; Rodrıguez-Romero et al. 2008).
Previously, it was shown that some Bacillus thuringiensis(Bt) strains had significant toxicity on eggs and larvae ofplant-parasitic and free-living nematodes (Osman et al.1988; Bradfish et al. 1991; Devidas and Rehberger 1992;Mozgovaya et al. 2002; Tian et al. 2007). Bt is a Gram-positive soil bacterium that is characterized by the produc-tion of insecticidal crystal proteins, which are known to betoxic to a wide range of insect species in the orders Lepi-doptera, Diptera, Coleoptera, and Hymenoptera (Maagd etal. 2001; Seifinejad et al. 2008). Some Cry proteins are alsotoxic to other invertebrates such as nematodes, mites, andprotozoans (Feitelson et al. 1992; Schnepf et al. 1998). Todate, there are six Cry protein families (Cry5, Cry6, Cry12,Cry13, Cry14, and Cry21) known to be toxic to larvae of anumber of free-living or parasitic nematodes (Bravo et al.1998; Crickmore et al. 1998; Marroquin et al. 2000; Wei etal. 2003; Crickmore 2005; Kotze et al. 2005; Tian et al.2007). On the basis of amino acid sequence homology, thesenematode-affecting Cry proteins (except for Cry6A) wereassigned to a single cluster in the main Cry lineage, parallelto other main groups (Bravo 1997; Marroquin et al. 2000).Separate phylogenetic analysis of the three domains of Cryprotein also generated a consensus tree result. The domain Iand domain II trees showed that nematode-specific toxins(Cry5, Cry12, Cry13, Cry14, and Cry21) were arranged to-gether in a single branch. Domain III from all the nematode-specific toxin trees are also clustered together (Bravo 1997).
Nematicidal and insecticidal toxins of Bt are believed toshare similar modes of action. Cry protein exerts its effectsby forming lytic pores in the cell membrane of gut epithelialcells. After ingestion of toxin by target nematode larvae, thecrystals dissolve within the gut of the nematode, and this isfollowed by proteolytic activation (Crickmore 2005). Crytoxicity is directed against the intestinal epithelial cells ofthe midgut and leads to vacuole and pore formation, pitting,and eventual degradation of the intestine (Marroquin et al.2000). The binding of pore forming toxin to a receptor inthe epithelial cell is a major event. A detailed understandingof how the Bt toxins interact with nematodes should facili-tate the production of more effective Bt biocontrol agents.Other than Cry toxin, previous studies using Bacillus thurin-giensis var. israelensis, Bacillus thuringiensis var. kurstakiand another parasporal crystal-forming bacterium, Bacillussphaericus, showed that some strains had significant activityon the eggs and larvae of animal-parasitic nematodes(Bottjer et al. 1986; Bowen et al. 1986a, 1986b; Bowen andTinelli 1987; Meadows et al. 1989).
The search for native strains with activity against plant-parasite nematodes could have an impact on the control ofnematodes worldwide. In this study, we evaluated thenematode-active cry genes contents of the native Bt strainsand used these findings for prediction of nematicidal activityof these isolates. The selected isolates showed high toxicityon plant-parasitic (Meloidogyne incognita) and free-living(Acrobeloides enoplus and Chiloplacus tenuis) nematodes.Bt strains containing some of the previously describednematode-active cry genes as well as potentially novel Cryproteins were identified.
Materials and methods
Bacterial strainsSeventy native Bt strains stored in the GenBank collection
of the Agricultural Biotechnology Research Institute of Iranwere used. These strains were originally isolated from soilsamples collected from different fields within three climatezones of Iran, Cold or Moderate Mountainous, Caspianic,and Dry and Semidry zones as previously described (SalehiJouzani et al. 2008). Known strains, including Bacillus thur-ingiensis var. darmstadiensis, Bacillus thuringiensis var. gal-leriae, Bacillus thuringiensis var. sotto, and Bacillusthuringiensis var. roskildiensis, that served as references fornematode-specific cry genes were supplied by DSMZ Com-pany (the German Resource Centre for Biological Material,
Salehi Jouzani et al. 813
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Braunschweig, Germany). Cultures of Bt strains were grownat 28 8C in nutrient broth (Difco) with vigorous shaking oron nutrient broth agar.
Oligonucleotide primers and PCR analysisFor detection of six nematode-specific active cry genes,
cry5, cry6, cry12, cry13, cry14, and cry21, six pairs of spe-cific primers from regions of related genes were synthesizedas previously described (Ejiofor and Johnson 2002; Porcarand Juarez-Perez 2003) (Table 1). Oligonucleotides weresynthesized in a DNA synthesizer (Microsyn 1450A; SystecInc.) as specified by the manufacturer. Total DNA was ex-tracted and purified following the method described byFerrandis et al. (1999). PCR was conducted for 250 ng oftotal Bt DNA with 2.5 U of Taq DNA polymerase,200 nmol/L each dNTP, 1 mmol/L each primer, and3 mmol/L MgCl2 in a final volume of 50 mL. Amplificationwas done in a Bio-Rad thermal cycler under the followingconditions: 5 min of denaturation at 94 8C followed by 25cycles of amplification with a 1 min denaturation at 94 8C,45 s of annealing at 45 8C, and 2 min of extension at 72 8C.An extra extension step of 10 min at 72 8C was added aftercompletion of the 25 cycles (Juarez-Perez et al. 1997). PCRproducts were analyzed by 1% agarose gel electrophoresis.PCR products were confirmed for genes of interest by re-striction analysis or sequencing. The distribution frequencyof a cry gene in Bt strains was defined as the percentage ofthe Bt isolates containing this gene among all of the isolatesaccording to Wang et al. (2003).
Production and characterization of parasporal inclusionsThe strains containing nematode-specific active cry genes
were cultured in the standard Bt medium (UG) containingbactopeptone (7 g/L), glucose, and salts as reported byLecadet and Dedonder (1971) at 28–30 8C for 72 h. By theend of growth, the bacterial density reached 1– 2 �109 CFU/mL. The percentage of vegetative cells was about1%. Spore–crystal mixtures were washed (10 000g for10 min at 41 8C) once in 0.5 mol/L NaCl and then twice incold sterile water. Two-millilitre samples of lysed cultureswere washed by centrifugation and resuspended once in2 mL of 0.5 mol/L NaCl and then twice in cold sterilizedwater containing 1 mmol/L protease inhibitor phenylmethyl-sulfonyl fluoride. Crystal proteins were solubilized with
10 mmol/L 2-mercaptoethanol at 37 8C for 4 h and centri-fuged at 10 000 g, suspended in sterile tap water, and finallystored at –20 8C until use. Parasporal inclusions of each iso-late were classified through phase-contrast and light micro-scopy.
Protein electrophoresisThe protein content of spore–crystal mixtures of the
strains containing nematode-specific active cry genes wasdetermined by SDS–PAGE analysis, as described byLaemmli (1970), using 10% or 12.5% acrylamide separatinggels. Samples (5–15 mg) of washed spore–crystal mixtures,prepared as described by Thomas and Ellar (1983), wereplaced in two concentrated sample buffers and heated at80 8C for 10 min, as described by Lecadet et al. (1992),and loaded onto the gel immediately before electrophoresis.Gels were stained with a solution containing 50% (v/v) etha-nol, 10% (v/v) acetic acid, and 0.1% (w/v) Coomasie bril-liant blue R250 for 40 min and then destained with asolution containing 6.75% (v/v) glacial acetic acid and9.45% (v/v) ethanol.
Preparation of M. incognita and bioassaysThe source of nematode inoculum was a culture of M. in-
cognita isolated originally from roots of eggplants (Solanummelongena) in fields of the Karaj region (Tehran Province)and maintained on tomato seedlings (Lycopersicum esculen-tum). The egg mass and adult females were separated fromthe root galls. To identify the species, perineal pattern offemales was prepared and the egg mass of identified spe-cies was first transferred to water for 24–48 h at 20–22 8Cuntil the second-stage juveniles (J2s) were hatched. Theywere then added to pots with pasteurized soil and newlyplanted tomato seedlings. Nematode eggs were extractedfrom 8-week-old nematode-infected roots, disrupted in 1%sodium hypochlorite by the procedure described by Husseyand Barker (1973), and used as inocula in the bioassays.Preliminary bioassays with high concentrations of spore–crystal suspensions (extracted spore–crystal mixtures wereused without any dilution) of the strains containingnematode-specific cry genes were performed with M. in-cognita. Four strains with high toxicity on M. incognitawere selected for detailed bioassays. Two treatments wereused in which a volume of 6 mL of the spore–crystal mix-
Table 1. Characteristics of specific primers for cry5, cry6, cry12, cry13, cry14, and cry21 genes.
Primer Sequence Positions Gene(s) recognizedProductsize Accession No(s).
cry5(+) 5’-taagcaaagcgcgtaacctc-3’ 2459–2478 cry5Aa1, Ab1, Ac1, Ba1 322 L07025, L07026, I34543, U19725cry5(–) 5’-gctcccctcgatgtcaatg-3’ 2780–2762 .cry6(+) 5’-tggcgtagaggctgttcaagta-3’ 609–630 cry6Aa1, Aa2, Ba1 302 L07022, AF499736, L07024cry6(–) 5’-tgtcgagttcatcattagcagtgt-3’ 910–887 .cry12(+) 5’-ctcccccaacattccatcc-3’ 2555–2573 cry12Aa1 363 L07027cry12(–) 5’-aattacttacacgtgccatacctg-3’ 2917–2894 .cry13(+) 5’-ctttgattatttaggtttagttcaa-3’ 225–250 cry13Aa1 313 L07023cry13(–) 5’-ttgtagtacaggcttgtgattc-3’ 537–515 .cry14(+) 5’-ataatgcgcgacctactgttgt-3’ 1634–1655 cry14Aa1 456 U13955cry14(–) 5’-tgccgttatcgccgttatt-3’ 2089–2071 .cry21(+) 5’-atacagggataggatttcaag-3’ 1112–1132 cry21Aa1, Aa2, Ba1 453 I32932, I66477, AB088406cry21(–) 5’-atccccattttctataagtgtct-3 ’ 1564–1542 .
814 Can. J. Microbiol. Vol. 54, 2008
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ture of each Bt strain with a concentration of 1 � 108 and2 � 108 CFU/mL was added to the 10 mL Petri dishes. Inthe control Petri dishes, sterile tap water was added. Therewere four replicates of each treatment and controls. Fivehundred eggs were placed into each Petri dish filled withthe two considered concentrations of spore–crystal mixturesand incubated at 25 8C (Franks et al. 2003). The percent-age of mortality (numbers of live J2s, dead J2s, and non-hatched eggs) was scored after 5 days in comparison witha parallel control in which eggs were dipped in sterile dis-tilled water instead of bacterial suspension. The data mor-tality were corrected with Abbott’s (1925) formula.
Preparation of free- living nematodes (C. tenuis andA. enoplus) and bioassays
Bioassays with spore–crystal suspensions of the strainscontaining nematode-specific cry genes also were performedwith field-collected free-living nematodes, including C. ten-uis and A. enoplus. For isolation of these nematodes, severalsoil samples were collected from tomato and eggplant fieldsof the Karaj region. These nematodes were extracted fromsoil samples with a centrifugal floatation technique andidentified according to De Grisse (1969). The adults wereused as inocula in the bioassays. Two treatments were usedin which a volume of 6 mL of the spore–crystal mixture ofeach Bt strain with a concentration of 1 � 108 and 2 �108 CFU/mL was added to the 10 mL Petri dishes. In thecontrol Petri dishes, sterile tap water was added. Then, 10adult nematodes from each species were transferred to10 mL Petri dishes filled with one of the two concentrationsof Bt spore–crystal extracts (Franks et al. 2003). There werefour replicates of each treatment and controls. Scoring ofpercentage of mortality (numbers of live and dead nema-todes) was started after 2 days in comparison with parallelcontrols. The data mortality were corrected with Abbott’s(1925) formula.
Statistical methodsFor all investigated parameters, ANOVA was performed
using the Minitab statistical software (version 13.20). Themeasurements of treatments were compared and grouped us-ing Duncan’s multiple range tests at the 0.01 significancelevel.
ResultsThe Bt strain collection used in this study was previously
characterized by different methodologies for detection andcharacterization of Lepidoptera- and Diptera-active strains(Salehi Jouzani et al. 2008; Seifinejad et al. 2008). In thisstudy, the distribution of nematode-effective cry genesamong these native Bt strains was evaluated, and finally,based on PCR and bioassays, the most nematode-effectivestrains were selected.
The PCR methodology described here utilized 12 primersto detect six different nematode-active cry genes, cry5, cry6,cry12, cry13, cry14, and cry21, described to codify for pro-teins active against nematodes (Table 1). Figure 1 showssome PCR products obtained with the strains. Knownstrains, including Bt var. darmstadiensis, Bt var. galleriae,Bt var. sotto, and Bt var. roskildiensis, that served as refer-
ences for nematode-specific cry genes showed the expectedPCR products with primers for the expected cry genes(Fig. 1). Each known cry gene should produce a PCR prod-uct with a unique molecular mass. Therefore, strains withPCR products of sizes other than those predicted are alsocandidates for harboring putative novel cry genes.
PCR results showed that 22 native strains contained aminimum of one nematode-active cry gene (31.5%). Fournematode-active cry genes, cry5, cry6, cry14, and cry21,were found in the isolates. Strains containing the cry6 genewere the most abundant and represent 16 of the 70 Bt iso-lates (22.8%) (Fig. 2). Bt strains harboring the cry14 genewere also abundant (14.2%). The cry21 and cry5 geneswere less abundant, found in 4.2% and 2.8% of the strains,respectively. None of the isolates contained more than twonematode-active cry genes. Six different nematode-activecry gene profiles were detected in this collection. The mostcommon profile of nematode-active cry genes containedonly the cry6 gene (11.5%) (Table 2). Finally, 68.5% of thestrains did not give any PCR product when assayed with pri-mers of the nematode-active genes (Fig. 2). It is importantto note that we previously showed that these isolates containother cry genes (Salehi Jouzani et al. 2008; Seifinejad et al.2008) (Table 2). Four native isolates containing nematode-active cry genes, S82, KH4, GON3, and GON7, did notshow the expected PCR product size for the cry5, cry6, andcry21 genes; they might contain potentially novel insecti-cidal crystal protein genes. Characterization and cloning ofthe potentially novel cry genes and the search for additionalnovel genes will be continued.
Microscopic studies of 22 nematode-active cry gene con-taining isolates showed that about 50% of the isolates con-tained more than one type of crystal. These strainscommonly showed bipyramidal, cuboidal, rhomboidal,spindly, and spherical forms of parasporal inclusions(Table 2). The diameter of the crystals was 0.7–1.5 mm.The isolates containing nematode-active cry genes were fur-ther characterized by SDS–PAGE of the crystal proteinproducts. The results revealed that these isolates synthesizeproteins with a molecular mass between 28 and 140 kDa(Fig. 3). The isolates produced two to six proteins withbands in this vicinity. All 22 isolates showed more than oneband.
Preliminary in vitro bioassays showed that high concen-trations of spore–crystal mixtures of 22 selected nativestrains had 0%–100% toxicity against M. incognita (datanot shown). The most effective strains, YD5, SN1, KON4,and GN5, were selected for more detailed bioassays. In thefollowing bioassays, two concentrations, 1 � 108 and 2 �108 CFU/mL, of spore crystal mixtures extracted from thesefour selected strains were used. After 24 h of incubation,none of the treatments affected the hatched nematodes. Theobservations were continued for 96 h. After 4 days, treatedeggs with spore–crystal mixtures either did not hatch orhatched and the larvae were dead. All preparations showednematicidal activity against M. incognita with up to 81%nematode mortality by days 3–4 (Table 3). Four strainsshowed significant nematicidal effects at probability 0.01 onM. incognita in comparison with the control. The toxicityrate of 2 � 108 CFU/mL for all isolates was about 10%more than that for 1 � 108 CFU/mL. Strains YD5 and
Salehi Jouzani et al. 815
# 2008 NRC Canada
KON4 (2 � 108 CFU/mL) showed 77% and 81% toxicity onM. incognita, respectively. It is important to note that allpreparations inhibited hatching of nematode eggs. The fourtested isolates inhibited egg hatching to varying degrees(Table 3). The highest inhibition of hatching of root-knotnematode eggs was observed for YD5 and KON4 with a46% and 45% inhibition rate, respectively.
The free-living nematodes C. tenuis and A. enoplus weremore susceptible and the highest mortality was observedwithin 48 h of incubation at all concentrations tested. Twopreparations of the four strains showed significant nemati-cidal effects, killing the adults of C. tenuis and A. enoplusto a varying degree (Table 4). Maximum mortality was re-
corded where 2 � 108 CFU/mL of strain SN1 and KON4was used and resulted in 68% and 77% adult deaths, respec-tively, of C. tenuis and 68% and 72%, respectively, for A.enoplus. Strain YD5 also produced 41% mortality of larvalC. tenuis (Table 4). It is important to note that our micro-scopic observations of inoculated nematodes showed that Bttoxins disrupted and blacked the digestive tract in threestudied nematodes after 3–4 days (data not shown).
Discussion
Recent reports on the frequency of occurrence of Bt iso-lates in natural environments indicate a high possibility of
Fig. 1. Agarose gel (1.2%) electrophoresis of PCR products amplified from native Bt strains. (A) Electrophoresis with cry5 primers: lane 1,Bt var. darmstadiensis as positive control; lanes 2–4, native Bt strains (S54, GN5, and GN3, respectively); M, molecular mass marker(1 kb); (B) electrophoresis with cry6 primers: lanes 1–5, native Bt strains (GN15, S54, GN5, GN3, and GN4, respectively); (C) electro-phoresis with cry14 primers: lane 1, QM2; lane 2, Bt var. sotto as positive control; lanes 3–6, native Bt strains (AL11, KON4, MI1, andYD5, respectively); (D) electrophoresis with cry21 primers: 1, Bt var. roskildiensis as positive control; lanes 2–4, native Bt strains (YD5,KH7, and QM2, respectively).
816 Can. J. Microbiol. Vol. 54, 2008
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Tab
le2.
Cry
stal
prot
ein
and
gene
feat
ures
of22
Bt
isol
ates
cont
aini
ngne
mat
ode-
activ
ecr
yge
nes.
Stra
inC
ryst
alfo
rma
Prot
ein
size
(s)
(kD
a)b
Nem
atod
e-ac
tive
gene
(s)
Lep
idop
tera
-act
ive
gene
(s)
dete
cted
byPC
R(S
eifi
neja
det
al.
2008
)D
ipte
ra-a
ctiv
ege
ne(s
)de
tect
edby
PCR
(Sal
ehi
Jouz
ani
etal
.20
08)
S54
Rm
35,
70,
135
cry5
cry4
B,
cry1
0,cr
y11,
cry2
4K
H5
Bp,
Rm
95,
50,
35cr
y6cr
y1A
a,cr
y1A
c,cr
y1C
,cr
y1D
,cr
y1F
,cr
y1I,
cry2
Ab,
cry9
B,
cry9
D,
vip3
Aa
cry2
Ab,
cry4
B,
cry1
0,cr
y11,
cry2
4,cy
t2
KH
7B
p,Sp
135,
95,
70cr
y6,
cry2
1cr
y1A
a,cr
y1A
b,cr
y1A
c,cr
y1C
,cr
y1D
,cr
y1F
,cr
y1I,
cry2
Aa,
cry9
B,
cry9
D,
vip3
Aa
cry2
Aa,
cry4
B,
cry1
0,cr
y11,
cry2
1,cr
y24
GN
1Sp
,C
b50
,70
,80
cry6
cry2
Ab,
cry4
Cor
D,
cry1
0G
N3
Cb,
Rm
17,
28,
50,
65cr
y6cr
y2A
b,cr
y10,
cry1
1,cr
y17,
cyt2
GN
4B
p,C
b13
5,12
0,63
,60
cry6
cry1
Aa,
cry1
Ab,
cry1
Ac,
cry1
C,
cry1
D,
cry1
E,
cry1
F,
cry1
I,vi
p3A
acr
y2A
a,cr
y10,
cry1
1,cy
t2
GN
5C
b28
,30
,35
,50
,13
5cr
y5cr
y2A
b,cr
y4B
,cr
y10,
cry1
1,cr
y17,
cry1
9,cy
t1,
cyt2
GN
15C
b,R
m28
,35
,50
,70
cry6
cry9
cry2
Ab,
cry4
Cor
D,
cry1
0,cr
y11,
cry2
4,cy
t2A
GI8
Rm
,C
b,B
p28
,50
,70
,12
0cr
y6cr
y1A
a,cr
y1A
c,cr
y1C
,cr
y1D
,cr
y1F
,cr
y1I
cry2
Ab,
cry1
7,cy
t1,
cyt2
KO
N1
Bp,
Cb
120,
95,
35cr
y14,
cry2
1cr
y1A
a,cr
y1C
,cr
y1D
,cr
y1E
,cr
y1F
,cr
y1I,
cry9
B,
cry9
D,
vip3
Aa
cry1
0,cr
y21,
cry2
4
YD
5B
p,R
m70
,13
5cr
y6,
cry1
4cr
y1A
a,cr
y1A
b,cr
y1A
c,cr
y1C
,cr
y1D
,cr
y1F
,cr
y1I,
cry2
Aa,
vip3
Aa
cry4
Cor
D,
cry1
0,cr
y11,
cry2
4
KH
9E
l,B
p17
,35
,50
,90
cry6
,cr
y14
cry1
Aa,
cry1
Ab,
cry1
Ac,
cry1
C,
cry1
F,
cry1
Icr
y2A
b,cr
y10,
cry1
7A
GI2
El,
Bp
50,
70,
135
cry6
cry1
Aa,
cry1
Ab,
cry1
Ac,
cry1
C,
cry1
D,
cry1
Icr
y2A
a,cr
y17
SN1
El
130
cry6
KO
N4
Bp,
Cb
135,
95cr
y14
cry1
Aa,
cry1
Ab,
cry1
Ac,
cry1
C,
cry1
D,
cry1
E,
cry1
F,
cry1
I,cr
y2A
,cr
y9D
,vi
p3A
aK
ON
6B
p,E
l24
,35
,50
,70
,12
0cr
y6,
cry1
4G
ON
4C
b,B
p,E
l50
,70
,12
0cr
y6,
cry1
4cr
y2A
bQ
M2
Bp,
Sl70
,13
5cr
y6,
cry2
1cr
y2,
cry2
1,cr
y24
AL
10B
p,C
b,Sp
120,
70cr
y6,
cry1
4cr
y1A
a,cr
y1A
b,cr
y1A
c,cr
y1C
,cr
y1D
,cr
y1E
,cr
y1F
,cr
y1I,
cry2
Ab,
vip3
Aa
cry2
Ab
AL
11B
p,C
b13
5,64
,43
cry1
4cr
y1A
a,cr
y1A
b,cr
y1A
c,cr
y1C
,cr
y1D
,cr
y1E
,cr
y1F
,cr
y1I,
cry2
Aa,
vip3
Aa
cry2
Aa
MI1
Bp,
Sl50
,90
,12
0cr
y14
cry2
Ab
AG
I1B
p,E
l13
5,95
cry6
,cr
y14
cry1
Aa,
cry1
Ab,
cry1
Ac,
cry1
Ad,
cry1
C,
cry1
D,
cry1
E,
cry1
F,
cry1
I,cr
y2A
a,vi
p3A
acr
y2A
a,cy
t2
aR
m,
rhom
boid
al;
Bp,
bipy
ram
idal
;Sp
,sp
heri
cal;
Sl,
spin
dle;
Cb,
cubo
idal
;E
l,el
liptic
al.
bM
ajor
prot
ein
band
son
SDS–
PAG
Ege
ls.
Salehi Jouzani et al. 817
# 2008 NRC Canada
being able to isolate novel strains of cry genes (Ben-Dov etal. 1997; Hansen et al. 1998; Ejiofor and Johnson 2002;Porcar and Juarez-Perez 2003; Wang et al. 2003). In this pa-per, the characterization of nematode-active Bt strains iso-lated from different agroecological regions of Iran ispresented. These results are useful for understanding the dis-tribution of cry genes and for prediction of toxicity and maylead to the identification of novel candidate genes for bio-engineered crop protection. Many researchers have utilizeda wide variety of techniques to identify and characterizecry-gene-carrying Bt isolates. For example, Brown andWhiteley (1992) employed molecular characterization toidentify two novel crystal protein genes from Bacillus thur-ingiensis var. thompsoni. They cloned and sequenced thecrystal proteins of this strain in Escherichia coli and usedthe electrophoretic mobilities to predict the molecularmasses of amino acid sequences. This method has been use-ful to characterize fully the insecticidal crystal proteins ofisolates. Recently, many workers have turned to PCR(Juarez-Perez et al. 1997; Ejiofor and Johnson 2002; Porcarand Juarez-Perez 2003; Arrieta et al. 2004) or a combination
of this technique with other methods, such as serology (Kim2000), SDS–PAGE for the detection and characterization ofcry genes from their isolates, and insecticidal activity(Porcar and Caballero 2000). Akhurst et al. (1997) used a16S rRNA gene oligonucleotide probe in PCR experiments,which allowed them to separate Bt serovars. We have com-bined morphological, molecular, and bioassay methods toachieve this objective. Few studies have reported a detailedcharacterization of Bt strain collections in terms of nemati-cidal cry gene content (Osman et al. 1988; Marroquin et al.2000; Mozgovaya et al. 2002). In this study, we consideredall known nematode-effective cry genes, detected them inthe native Bt isolates, and used obtained the information forprediction of their toxicity on nematodes.
Our results showed that 22 native strains contained a min-imum of one nematode-active cry gene (31.5%). Four nema-tode-active cry genes, cry5, cry6, cry14, and cry21, werefound in the isolates, but cry12 and cry13 were not ob-served. The frequency of nematode-active cry genes in Ira-nian strains seems to be higher than that in Bt straincollections previously analyzed (Bravo et al. 1998; Ejioforand Johnson 2002). Bravo et al. (1998) evaluated about 496Bt strains isolated from 503 soil samples collected from fiveregions of Mexico and did not find any nematode-active crygenes in their collection. Also, Ejiofor and Johnson (2002)presented a PCR characterization of 95 Bt strains isolatedfrom soil samples collected from the south-central UnitedStates that showed a different cry gene distribution and didnot find any nematode-active cry genes in the collection.
Four strains gave PCR products of different sizes whenassayed with cry5, cry6, and cry21 primers. These strainsare candidates for harboring novel cry genes. The isolationand sequencing of novel cry genes should be encouragedonce the target insect is identified and more evidence onthe potential of novel toxins as biological control agents isavailable.
The preliminary bioassays on M. incognita showed thatsome strains harboring the same cry gene profiles have dif-ferent activity against nematodes. The results confirm thatthe presence of specific genes is not an accurate indicatorof toxicity because the genes could be inactive, under thecontrol of an inefficient promoter, or expressed in a concen-tration too low to affect toxicity (Masson et al. 1998;Ferrandis et al. 1999). The bioassay results indicated thattwo native strains (YD5 and KON4) remarkably reducedthe populations of M. incognita. Also, these strains remark-ably reduced the percentages of hatchability of eggs of thenematode. These results confirm the earlier reports ofOsman et al. (1988) and Mozgovaya et al. (2002) in whichtomatoes inoculated with M. incognita had fewer galls onroots grown in soil containing Bt than on roots grown insoil without Bt. To a lesser extent, Bt also reduced the per-centage of hatchability of the eggs of M. incognita. Theseresults are in agreement with those of Osman et al. (1988)who reported that Bt reduced the root galling and numberof egg masses produced by M. incognita. They reported thatBt also reduced the percent hatch of the eggs of M. incog-nita.
The results of bioassays on C. tenuis and A. enoplusshowed that the isolates SN1 and KON4 with more than68% mortality had the most toxicity on these nematodes.
Fig. 3. SDS–PAGE of spore crystals of some native Bt strains(KON6, SN1, GN5, YD5, and KH9) containing nematode-activecry genes; M, molecular mass marker.
Fig. 2. Distribution of nematode-active cry genes in 70 field-collected strains of Bt and identified by PCR analysis with specificprimers.
818 Can. J. Microbiol. Vol. 54, 2008
# 2008 NRC Canada
Tab
le3.
Nem
atic
idal
activ
ityof
four
nativ
eB
tst
rain
ste
sted
invi
tro
agai
nst
root
-kno
tne
mat
odes
M.
inco
gnit
a.
Dea
d(%
)N
onha
tche
deg
gs(%
)O
bser
ved
tota
lm
orta
lity
(%)
Cor
rect
edm
orta
lity
(%)
Stra
in1�
108
CFU
/mL
2�
108
CFU
/mL
1�
108
CFU
/mL
2�
108
CFU
/mL
1�
108
CFU
/mL
2�
108
CFU
/mL
1�
108
CFU
/mL
2�
108
CFU
/mL
GN
518
±3
30±
434
±435
±4
52c
65b
35c
52b
KO
N4
35±
541
±5
32±4
45±
467
a86
a55
a81
aY
D5
30±
337
±4
37±6
46±
562
b83
a48
b77
aSN
121
±3
21±
330
±642
±3
51c
63b
33c
49b
Con
trol
6±2
5±2
21±4
23±
327
d28
c0d
0d
Not
e:D
ata
are
mea
nsof
four
repl
icat
es±
SE.
With
inro
ws,
mea
nsfo
llow
edby
the
sam
ele
tter
are
not
sign
ific
antl
ydi
ffer
ent
atth
e0.
01pr
obab
ility
leve
lba
sed
onD
unca
n’s
mul
tiple
rang
ete
sts.
Tab
le4.
Tox
icity
offo
urna
tive
Bt
stra
ins
test
edin
vitr
oag
ains
tth
efr
ee-l
ivin
gne
mat
odes
C.
tenu
isan
dA
.en
oplu
s.
C.
tenu
is%
obse
rved
mor
talit
yC
.te
nuis
%co
rrec
ted
mor
talit
yA
.en
oplu
s%
obse
rved
mor
talit
yA
.en
oplu
s%
corr
ecte
dm
orta
lity
Stra
in1�
108
CFU
/mL
2�
108
CFU
/mL
1�
108
CFU
/mL
2�
108
CFU
/mL
1�
108
CFU
/mL
2�
108
CFU
/mL
1�
108
CFU
/mL
2�
108
CFU
/mL
GN
539
±3c
51±
4c20
±1c
40±
3c43
±4b
56±4
b17
±2b
43±
3bK
ON
452
±5b
74±
5b37
±3b
68±
4b60
±4a
78±5
a50
±3a
72±
4aY
D5
41±
3c52
±4c
23±2
c41
±3c
39±
7c54
±5c
23±
4c40
±3c
SN1
64±
3a81
±3a
40±
2a77
±2a
62±
6a75
±6a
52±
4a68
±5a
Con
trol
24±
2d19
±2d
0d0d
21±
3d23
±3d
0d0d
Not
e:D
ata
are
mea
nsof
four
repl
icat
es±
SE.
With
inro
ws,
mea
nsfo
llow
edby
the
sam
ele
tter
are
not
sign
ific
antl
ydi
ffer
ent
atth
e0.
01pr
obab
ility
leve
lba
sed
onD
unca
n’s
mul
tiple
rang
ete
sts.
Salehi Jouzani et al. 819
# 2008 NRC Canada
SN1 and KON4 contained only cry5 and cry14, respectively.It is important to note that other strains containing two nem-atode-active cry genes showed less toxicity than others con-taining one. This may be because of silencing or lowexpression of these genes.
The mechanisms of the nematicidal activity of Bt are notcompletely understood. It has been reported that spores of Btgerminated in the intestine of the bacteriophagous nematodePanagrellus redivivus. Subsequently, colonization of the en-tire nematode body by Bt occurred within 24 h (Borgonie etal. 1995). It has been suggested that the nematicidal factor iseffectively internalized into the cells of the nematode diges-tive tract (Devidas and Rehberger 1992; Borgonie et al.1995, 1996; Mozgovaya et al. 2002; Wei et al. 2003). Weiet al. (2003) showed that toxicity in nematodes correlateswith damage to the intestine, consistent with the mechanismof crystal toxin action in insects. Intoxication was readilyjudged by a lack of pumping, inhibition of growth (i.e.,small size), pale coloration, and lethargy. Marroquin et al.(2000) observed that nematodes fed Cry5B showed exten-sive changes in gut morphology. These changes includedthe formation of vacuole-like structures in gut cells, ashrinking of the gut away from the body wall of the animal,tight constrictions at various points along the gut, and anoverall pitted appearance. Our microscopic observationsconfirm the previous studies because deformation, discolora-tion, and darkness of the digestive tract were observed inthree studied nematodes after 3–4 days.
Another possibility is contact nematicidal activity of the tox-ins, as observed by Devidas and Rehberger (1992). These work-ers found that a partially purified preparation of b-exotoxinfrom Bt, when applied directly to the nematode body sur-face, caused 100% mortality of the free-living nematodeCaenorhabditis elegans but not of the juveniles of the root-knot nematode M. incognita. We believe that both the infec-tive process and the direct contact should be considered innematicidal studies. Further studies of the mechanisms ofthe nematicidal activity of Bt are needed to estimate its po-tential as a biological control agent and to evaluate possibleside-effects.
Management of plant-parasitic nematodes involves reduc-tion in nematode populations in the soil and roots withoutadversely affecting the plant response (yield). In this study,we examined the utility of this microbe to limit plant nema-tode populations. The concentration at which noticeable re-duction in nematode numbers became apparent was 2 �108 CFU/mL for strains YD5 and KON4. Thus, it could beconcluded that the two native isolates YD5 and KON4 havehigh toxicity on M. incognita. Furthermore, in previouswork, we showed that YD5 has high toxicity on Lepidopterapests and also contains some Diptera-active cry genes in-cluding cry4C or cry4D, cry10, cry11, and cry24 (SalehiJouzani et al. 2008; Seifinejad et al. 2008), so after green-house and field confirmations, it can be used as biocontrolagent with potential and can be an alternative to chemicalpesticides to avoid pollution and hazards to the environment.
The bioassay of these two selected isolates against otherplant-parasitic nematodes, characterization of the observedpotentially novel cry genes, and the search for additionalnovel genes will be continued. Additional areas of researchcould include genetic engineering of crop plants to incorpo-
rate the toxin genes, structural modification of the toxin it-self for improved activity, and possibly the selection of Btstrains with higher levels of nematicidal activity.
ConclusionIt appears from the present study that research on native
Bt isolates from natural environments indicates a high possi-bility of being able to isolate novel strains and cry genesthat detection of nematicidal cry genes using PCR technol-ogy is very useful for prediction of nematicidal effects ofnative Bt strains, and that the use of two selected strainsthat are toxic to both insects and root-knot nematodes couldbe developed into a valuable crop management tool to re-duce the deleterious impact of insects and plant-parasiticnematodes on plant production.
AcknowledgementsThe authors are indebted to Dr. Seyyed Mojtaba Khayam
Nekouie and Dr. Rahim Osfoori for support and criticalreading of the manuscript. This work was supported by agrant from the Agricultural Research and Education Organi-zation of Iran.
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