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Transcript of Characterization of the Pho89 phosphate transporter by functional hyperexpression in Saccharomyces...
R E S E A R C H A R T I C L E
CharacterizationofthePho89phosphate transporter by functionalhyperexpression inSaccharomyces cerevisiaeRenata A. Zvyagilskaya1, Fredrik Lundh2, Dieter Samyn2, Johanna Pattison-Granberg2, Jean-MarieMouillon2, Yulia Popova3,4, Johan M. Thevelein3,4 & Bengt L. Persson2
1A.N. Bach Institute of Biochemistry, Russian Academy of Sciences, Leninsky Prospect, Moscow, Russia; 2School of Pure and Applied Natural Sciences,
Kalmar University, Kalmar, Sweden; 3Laboratory of Molecular Cell Biology, Institute of Botany and Microbiology, Katholieke Universiteit Leuven,
Arenberg, Leuven-Heverlee, Flanders, Belgium; and 4Department of Molecular Biology, VIB, Kasteelpark, Arenberg, Leuven-Heverlee, Flanders, Belgium
Correspondence: Bengt L. Persson, School
of Pure and Applied Natural Sciences, Kalmar
University, S-391 82 Kalmar, Sweden. Tel.:
146 480 446276; fax: 146 480 446262;
e-mail: [email protected]
Present addresses: Johanna Pattison-
Granberg, Sweden Recycling AB,
Jarnvagsgatan 19, S-360 51 Hovmantorp,
Sweden.
Jean-Marie Mouillon, Fluxome Sciences A/S,
Diplomvej 378, D-2800 Kgs. Lyngby,
Denmark.
Received 19 December 2007; revised 5 May
2008; accepted 27 May 2008.
First published online July 2008.
DOI:10.1111/j.1567-1364.2008.00408.x
Editor: Andre Goffeau
Keywords
phosphate uptake system; Pho89; PHO
pathway; Saccharomyces cerevisiae .
Abstract
The Na1-coupled, high-affinity Pho89 plasma membrane phosphate transporter
in Saccharomyces cerevisiae has so far been difficult to study because of its low
activity and special properties. In this study, we have used a pho84D pho87Dpho90D pho91D quadruple deletion strain of S. cerevisiae devoid of all transporter
genes specific for inorganic phosphate, except for PHO89, to functionally
characterize Pho89 under conditions where its expression is hyperstimulated.
Under these conditions, the Pho89 protein is strongly upregulated and is the sole
high-capacity phosphate transporter sustaining cellular acquisition of inorganic
phosphate. Even if Pho89 is synthesized in cells grown at pH 4.5–8.0, the
transporter is functionally active under alkaline conditions only, with a Km value
reflecting high-affinity properties of the transporter and with a transport rate
about 100-fold higher than that of the protein in a wild-type strain. Even under
these hyperexpressive conditions, Pho89 is unable to sense and signal extracellular
phosphate levels. In cells grown at pH 8.0, Pho89-mediated phosphate uptake at
alkaline pH is cation-dependent with a strong activation by Na1 ions and
sensitivity to carbonyl cyanide m-chlorophenylhydrazone. The contribution of
H1- and Na1-coupled phosphate transport systems in wild-type cells grown at
different pH values was quantified. The contribution of the Na1-coupled transport
system to the total cellular phosphate uptake activity increases progressively with
increasing pH.
Introduction
In order to adapt to a fluctuating nutrient environment,
unicellular organisms need to have specialized nutrient
sensing and uptake mechanisms. In the yeast Saccharomyces
cerevisiae, inorganic phosphate (Pi) acquisition is accom-
plished by both low-affinity and high-affinity Pi transport
systems (Persson et al., 2003). Also, the glycerophosphoino-
sitol transporter (Git) has been shown to be able to act as a
low-affinity inorganic phosphate transporter (Wykoff &
O’Shea, 2001; Almaguer et al., 2003; Pinson et al., 2004).
The low-affinity Pi transport system, composed of the
Pho87, Pho90 and Pho91 permeases, has been shown to be
independent of external phosphate concentration at the
transcriptional level (Auesukaree et al., 2003). However, in
a recent study, it was proposed that the low-affinity system is
downregulated by the PHO pathway as a consequence of an
upregulation of a negative regulator of this system, Spl2,
under low-phosphate conditions (Wykoff et al., 2007). In
contrast, the high-affinity phosphate transport system com-
posed of Pho84, a proton-coupled phosphate transporter
(Bun-ya et al., 1991; Lagerstedt et al., 2004), and Pho89, a
cation-coupled phosphate transporter (Martinez & Persson,
1998; Pattison-Granberg & Persson, 2000), is upregulated by
the PHO regulatory pathway in response to low external
phosphate (Oshima, 1997; Persson et al., 2003). When cells
encounter phosphate limitation in the external medium, the
PHO pathway induces expression of the genes coding for the
FEMS Yeast Res 8 (2008) 685–696 c� 2008 Federation of European Microbiological SocietiesPublished by Blackwell Publishing Ltd. All rights reserved
high-affinity transport system (PHO84, PHO89) and for the
secreted acid phosphatases (PHO5, PHO11, PHO12). The
corresponding proteins are synthesized in order to scavenge
phosphate from the surrounding environment (Lenburg &
O’Shea, 1996; Oshima, 1997). High-capacity uptake of free
phosphate from outside the cell under phosphate-limiting
conditions is mainly mediated by the Pho84 transporter
(Bun-ya et al., 1991). In the absence of the high-affinity
transporters, the low-affinity transporters, Pho87, Pho90
and Pho91, are needed for phosphate transport but deletion
of these does not result in any major phosphate uptake
defect (Wykoff & O’Shea, 2001). Of these, the Pho91 protein
was recently proposed to be a vacuolar phosphate transpor-
ter active in the regulation of intracellular phosphate home-
ostasis and polyphosphate levels (Hurlimann et al., 2007).
Of the high-affinity transporters, Pho84 has been well
characterized previously and has been shown to scavenge
phosphate from the surrounding medium in a symport
manner with protons at an acidic pH optimum of 4.5
(Bun-ya et al., 1991). Although much less information is
available about the Pho89 transporter, it has been proposed
to have an alkaline pH optimum of 9.5 and phosphate
uptake coupled with cations, preferably Na1 ions (Martinez
& Persson, 1998). Of several identified sodium-dependent
phosphate transporters from both higher and lower eukar-
yotes (Werner & Kinne, 2001; Virkki et al., 2007), Pho89
belongs to the PiT family (Saier, 2000) also comprising the
extensively characterized mammalian homologs PiT-1 and
PiT-2 (Werner & Kinne, 2001; Collins et al., 2004).
It is believed that the Pho89 transporter plays a minor
role in total phosphate acquisition. In previous studies, we
have shown that under low-phosphate growth conditions,
the Pho89 transporter displays a 100-fold lower phosphate
uptake activity as compared with the Pho84 transporter
(Pattison-Granberg & Persson, 2000). Recently, whole-gen-
ome studies have revealed that the PHO89 gene is not only
upregulated under phosphate limitation but also by Mg21
starvation, cell wall damage, Ca21 stress and alkalinization
(Garcia et al., 2004; Viladevall et al., 2004; Wiesenberger
et al., 2007). When switching to alkaline conditions, PHO89
shows a strong calcineurin pathway-dependent transcrip-
tional induction already after 5–10 min (Serrano et al.,
2002). The derepression is believed to be caused by an
increase in the cytoplasmic Ca21 concentration that occurs
under these stress conditions (Yoshimoto et al., 2002).
Under alkaline extracellular conditions, phosphate entry is
mainly in the form of bivalent phosphate ions, HPO42�,
resulting in cytosolic alkalinization. Further support for the
alkaline response being caused by a Ca21 burst under
alkaline growth conditions was obtained by the demonstra-
tion that expression of b-galactosidase behind the PHO89
promoter was strongly affected by the intracellular Ca21
concentration (Viladevall et al., 2004). Under alkaline con-
ditions, phosphate acquisition via the Pho89 transporter is
favored by the upregulation of the Na1-ATPase Ena1
(Serrano et al., 2002), resulting in a generation of a Na1
motive force across the plasma membrane.
In a recent study, it has been proposed that the presence of
the low-affinity phosphate transporters (PHO87, PHO90 and
PHO91) is needed for normal phosphate repression of the
PHO-regulated genes (Pinson et al., 2004). In contrast to
repression in a wild-type (WT) strain, in a pho87D pho90Dpho91D strain the PHO genes are induced under high-phos-
phate conditions (Auesukaree et al., 2003; Pinson et al., 2004).
This finding is further supported by the observation that under
high-phosphate conditions a quadruple deletion strain expres-
sing only the Pho84 or the Pho89 transporter is still able to take
up phosphate and maintain growth (Wykoff & O’Shea, 2001;
Auesukaree et al., 2003). Interestingly, Wykoff et al. (2007) show
that overexpression of the negative regulator of the low-affinity
transport system, Spl2, induces expression from the PHO84
promoter, resulting in similar protein levels as in a pho87Dpho90D pho91D strain. The pho84D pho87D pho90D pho91Dquadruple deletion strain exhibits a higher rate of phosphate
uptake compared with a pho84D strain under both high- and
low-phosphate growth conditions. This indicates enhanced
activity and/or hyperexpression of the Pho89 transporter, which
is in agreement with the increased PHO89 transcript levels seen
in this strain (Auesukaree et al., 2003). In previous studies,
phosphate transport via hyperexpressed Pho89 was measured at
acidic pH without any addition of sodium, indicating that
Pho89 is apparently able to mediate phosphate uptake without
Na1-coupling at acidic pH. Growth capacity, however, under
these conditions was strongly reduced.
The results in the present study highlight the role and
contribution of Pho89 in the total phosphate acquisition system
under different growth conditions. For the first time, Pho89
expression was followed over a broad pH range and it was
clearly demonstrated that the level was enhanced under alkaline
conditions. We have also made use of the pho84D pho87Dpho90D pho91D quadruple deletion strain (Auesukaree et al.,
2003) to characterize in detail the transport properties of Pho89
without any influences of other Pi transporters. Although the
Pho89 expression level in the pho84D pho87D pho90D pho91Dstrain was constantly high during growth at pH values between
4.5 and 8.0, the transport activity was strongly diminished
under acidic conditions, implying some type of mechanistic
restraint. We have investigated in detail the ion-coupling
requirement of Pho89-mediated phosphate uptake in a strain
where the activity was not influenced by other phosphate
transporters and demonstrated that Na1 was the preferred
cotransported cation. Furthermore, for the first time, we have
also precisely determined the kinetic parameters, Km and Vmax,
under conditions optimal for Pho89 transport activity and also
presented evidence that the Pho89 transporter, in contrast to
Pho84 and Pho87 (Giots et al., 2003), is not able to sense
FEMS Yeast Res 8 (2008) 685–696c� 2008 Federation of European Microbiological SocietiesPublished by Blackwell Publishing Ltd. All rights reserved
686 R.A. Zvyagilskaya et al.
external phosphate for activation of the protein kinase A (PKA)
pathway.
Materials and methods
Growth media, growth conditions and yeaststrains
Yeast cells were routinely grown at 30 1C in either high-
phosphate (HPi) or low-phosphate (LPi) liquid media as
described elsewhere (Mouillon & Persson, 2005) or on
complex buffered agar-solidified LPi medium containing
0.54% Bacto peptone, 2% glucose, 2% agar, 0.05% MgSO4,
0.02% MgCl2, 0.04% (NH4)2SO4, 0.1% NaCl, standard
concentrations of vitamins and microelements and c.
250 mM Pi as traces from the reagents. To starve cells for
phosphate, they were precultured at 30 1C into the mid-
exponential phase to an A600 nm of 1.0–1.5 in YP medium
(1% yeast extract, 2% bacto peptone) with 2% glucose. The
mid-exponential-phase cells were then harvested and trans-
ferred to phosphate starvation medium (5.7 g L�1 of yeast
nitrogen base without phosphate), pH 8.0, with 4% glucose
and appropriate amino acids. Cells were starved for 3 days at
30 1C under continuous shaking and the starvation medium
was refreshed daily.
Culture media were autoclaved, adjusted to the desired
pH values with H2SO4 or KOH and supplemented with
50 mM Tris-HCl buffer. Cultures confluent in the same
50 mM Tris-HCl buffers were aseptically collected by cen-
trifugation and suspended to 10 A600 nm U mL�1. Aliquots
(150mL) of the suspension were spread onto plates
(1.5 A600 nm U per plate) and allowed to grow for 18–23 h.
The validity of this method was demonstrated previously
(Zvyagilskaya et al., 2001; Zvyagilskaya & Persson, 2003); an
empirically optimized growth period on the solidified
buffered media was used to attain maximal activity of both
high-affinity H1- and Na1-coupled phosphate transport
systems. Cell growth was monitored turbidometrically at
A600 nm. Saccharomyces cerevisiae strains used in this study
are listed in Table 1.
Phosphate transport measurements
Phosphate uptake was assayed in intact S. cerevisiae cells
grown under LPi conditions. Cells were washed with 25 mM
Tris-succinate buffer adjusted to the pH of the assay buffer
to be used subsequently and resuspended in the same buffer
supplemented with 3% glucose, alkali ions and an uncou-
pler as indicated. The uptake was initiated by addition
to a 30mL cell suspension (0.546 mg dry weight) of 1 mL
of [32P]orthophosphate (carrier-free, 0.18 Cimmol�1,
1 mCi = 37 MBq; GE Healthcare, UK). Phosphate uptake
was terminated by addition of 3 mL ice-cold Tris-succinate
dilution buffer. The cell suspensions were immediately
filtered, the Whatman GF/F filters (Whatman, UK) were
washed once with the same cold dilution buffers and the
radioactivity retained on the filters was determined by liquid
scintillation spectrometry. Lineweaver–Burke analysis of
phosphate uptake as a function of external phosphate
concentration in WT (SH8246) and pho84D pho87D pho90Dpho91D (SH6302) strains was carried out with cells grown
on solid LPi media at pH 4.5 and 8.0, respectively. Initial
velocities at phosphate concentrations ranging from 1.71 to
11 mM were determined over the first 60 s in Tris-succinate
buffer (pH 4.5) supplemented with 3% glucose for SH8246
and Tris-succinate buffer (pH 8) supplemented with 3%
glucose and 10 mM NaCl for SH6302. For phosphate uptake
into intact phosphate-starved WT (SH8246) and pho84Dpho87D pho90D pho91D (SH6302) strains, cells were har-
vested by centrifugation and the pellet was washed twice
with 25 mM MES buffer adjusted to the appropriate pH.
Then, 120 mL of freshly washed cells was resuspended in
1.5 mL of phosphate-starvation medium at pH 4.5 and 8.0.
Aliquots of 80 mL were incubated for 15 min at 30 1C under
continuous shaking, after which 20mL of the [32P]ortho-
phosphate stock solution with a final concentration of 1 mM
KH2PO4 was added. Transport was terminated after 5 min
by adding 5 mL of ice-cold water. Cells were rapidly filtered,
rinsed twice with ice-cold water and filters were subjected to
liquid scintillation spectrometry as described above.
Sampling, extraction and determination oftrehalase activity
Phosphate-starved glucose-repressed cells were rapidly
cooled on ice and harvested by centrifugation. The pellet
was washed twice with ice-cold 25 mM 2-(N-morpholino)
ethanesulfonic acid (MES) buffer adjusted to the appropri-
ate pH and resuspended in phosphate-starvation medium,
Table 1. Saccharomyces cerevisiae strains used in this study
Strain Genotype Sources or references
SH8246 MATa ade2 leu2-3, 112 ura3-1, 2 trp1-289 his3-532 can1 pho3-1 Ogawa & Oshima (1990)
SH8333 MATa ade2 leu2-3, 112 ura3-1, 2 trp1-289 his3-532 can1 pho3-1 pho84<HIS3 Auesukaree et al. (2003)
SH6302 MATa ade2 leu2-3, 112 ura3-1, 2 trp1-289 his3-532 can1 pho3-1 pho84<HIS3 pho87<
URA3 pho90<CgTRP1 pho91<CgLEU2
Auesukaree et al. (2003)
FEMS Yeast Res 8 (2008) 685–696 c� 2008 Federation of European Microbiological SocietiesPublished by Blackwell Publishing Ltd. All rights reserved
687Characterization of the Pho89 phosphate transporter
pH 8.0, in the presence of 4% glucose, and incubated at
30 1C with shaking. After 30 min of incubation, KH2PO4
was added to the culture. Samples (75 mg cells mL�1) were
withdrawn at indicated time points. Cells were rapidly
cooled by addition of ice-cold water, centrifuged and
resuspended in 500 mL of ice-cold 25 mM MES buffer, pH
7.0. Crude cell extracts were prepared as described pre-
viously (Pernambuco et al., 1996) and dialyzed (BRL micro-
dialysis system) against 25 mM MES buffer, pH 7, 50 mM
CaCl2 at 4 1C. Trehalase activity in dialyzed cell extracts was
determined using a coupled enzymatic reaction of glucose
oxidase and peroxidase with glucose as described previously
(Pernambuco et al., 1996).
RNA isolation and relative quantitative reversetranscriptase (RT)-PCR
Total RNA from yeast cells grown at pH 4.5 at 30 1C to an
A600 nm of 1.0 in either HPi (30 mM) or LPi (250mM) liquid
media (Kaneko et al., 1982) was isolated using RNAqueousTM
(Ambion). RNA samples were treated with RQ1 RNAse-free
DNAse (Promega) before the RT-PCR reaction using the
SuperScriptTM One-step RT-PCR system (Invitrogen, the
Netherlands). Primers (50-AATGCTTTACTGCTGCTTGG
and 50-AGGTCCACTTCCTGGATGTC) and (50-TGAGGT
TGCTGCTTTGGTA and 50-TTCTGGGGCTCTGAATCTTT)
were used for amplification of a 430-bp fragment of the
PHO89 gene and a 769-bp fragment of the actin (ACT1) gene,
respectively. One hundred nanograms of total RNA was used
for each reaction. The linear range of the PCR amplification in
terms of cycle numbers and substrates has been preliminarily
checked for both PHO89 and ACT1 transcripts. Amplified
DNA products were separated on a 1% agarose gel and
transcript levels were quantified based on the signal intensity
detected in the presence of ethidium bromide using the MULTI-
ANALYST software (BioRad).
Electrophoresis and Western blot analysis
Cells were collected from liquid and plate cultures. Proteins
were extracted and precipitated as described previously
(Horak & Wolf, 2001). Equivalent concentrations of the
resolubilized protein (30 mg) were mixed with sample buffer
before separation on a 10% sodium dodecyl sulfate-poly-
acrylamide gel (Laemmli et al., 1970). Immunoblotting onto
poly(vinylidene difluoride) membranes (Immobilon-P,
Millipore) was carried out according to the manufacturer’s
protocol. The Pho89 antibody was produced in rabbit
against a peptide corresponding to the consensus sequence
of 12 residues (YYEGRRNLGTTV) located in the large
cytosolic loop connecting TM7 and TM8, and purified
using affinity chromatography (Innovagen, Sweden). Horse-
radish peroxidase-conjugated anti-rabbit-IgG-antibody (GE
Healthcare) was used for immunological detection of the
Pho84 and Pho89 proteins. After a short incubation with the
chemiluminescent substrate, the blot was exposed to an
X-ray film for 1–2 min. The molecular masses of separated
proteins were determined by comparison with the relative
mobility of prestained marker proteins (Fermentas, Germany).
Phosphate determinations
Phosphate in the growth media was assayed spectrophoto-
metrically at 850 nm essentially as described (Nyren et al.,
1986).
Results
Pho89 protein expression level and activity arehighly elevated in a pho84D pho87D pho90Dpho91D strain in agreement with the elevatedtranscript level
The goal of these studies was to establish PHO89 hyper-
expressive growth conditions, allowing us to analyze in a
comprehensive manner the functional properties and reg-
ulation of the Pho89 transporter. To start, we performed an
RT-PCR to validate PHO89 expression levels in three
different strains, i.e. WT (SH8246), pho84D (SH8333) and
pho84D pho87D pho90D pho91D (SH6302), grown under
HPi and LPi conditions. As shown in Fig. 1, PHO89
transcripts were only barely detected in WT cells grown on
HPi or LPi media. In contrast, in the pho84D strain the
transcript level was significantly increased, especially under
LPi conditions where the level was approximately twofold as
compared with the HPi-grown cells. In the pho84D pho87Dpho90D pho91D strain, the transcript level further increased
strongly both in Lpi- and in HPi-grown cells. The loss of
phosphate dependence in transcriptional induction of
Fig. 1. Relative quantification of PHO89 transcripts by RT-PCR. Strains,
WT (SH8246), pho84D (SH8333) and pho84D pho87D pho90D pho91D(SH6302) grown in both HPi and LPi media were subjected to RT-PCR
performed on total RNA collected from cells using synthesized homo-
logous primers directed towards the PHO89 gene and the actin gene
(ACT1) as an internal standard.
FEMS Yeast Res 8 (2008) 685–696c� 2008 Federation of European Microbiological SocietiesPublished by Blackwell Publishing Ltd. All rights reserved
688 R.A. Zvyagilskaya et al.
PHO89 in the strain carrying the quadruple deletion is in
agreement with a previous report (Auesukaree et al., 2003).
We next investigated whether the upregulated PHO89
transcript level in the quadruple deletion mutant strain also
conferred high protein expression and high-capacity phos-
phate transport in cells grown on solid buffered LPi medium
at pH 7.0. As shown in Fig. 2, phosphate-uptake activity
assayed at pH 8.5 in the presence of 5 mM NaCl increased
progressively and reached its maximum (c. 7 mmol min�1 g�1
cells) at an A600 nm of 22 of the culture, coinciding with
maximal protein expression of the Pho89 transporter.
Further cell growth resulted in a decrease of both protein
expression and activity of the Pho89 transporter. The
dramatic upregulation of functionally active Pho89 shown
in this study resulted in a c. 100-fold higher transport
activity than reported previously (Pattison-Granberg &
Persson, 2000).
Pho89 protein expression and activity is stronglypH dependent
Next, we have analyzed in detail the pH-dependence of
Pho89 activity and protein expression in the quadruple
deletion mutant (Fig. 3). Although cells of this strain grown
on solid LPi media at pH 4.5, 6.0 and 8.0 revealed efficient
synthesis and only a slightly increased expression of the
Pho89 protein in the pH range of 4.5–8.0, the phosphate
uptake activity of cells grown at pH 4.5, 6.0 and 8.0 was
Fig. 2. Time course of the evolution of [32P]orthophosphate uptake
activity by pho84D pho87D pho90D pho91D (SH6302) cells during their
growth on agar solidified buffered LPi medium, pH 7.0. Cells grown
overnight on solidified buffered LPi medium, pH 7.0, were aseptically
collected, washed twice with sterile 25-mM Tris-succinate buffer, pH 7.0,
resuspended in the same buffer and spread on solidified LPi medium, pH.
7.0 (’). At specified time points, cells were harvested by centrifugation
at 5500 g for 15 min and washed three times with phosphate- and
substrate-free medium adjusted to pH 8.5. Phosphate uptake (�) was
measured in 25-mM Tris-succinate buffer in the presence of 3% glucose
and 10-mM NaCl at pH 8.5. Average and SE values of triplicate assays
using the same cell preparation are plotted. Lower panel: immuno-
detection of the Pho89 protein levels in samples collected at the
indicated time points.
Fig. 3. Activity and protein levels of phosphate uptake as a function of
pH. pH dependence of phosphate uptake by pho84D pho87D pho90Dpho91D (SH6302) cells grown on agar solidified buffered LPi media. Cells
grown at pH 4.5, 6.0 and 8.0 for 18.5 h were collected from the plates,
washed and resuspended in cold Tris-succinate buffer at appropriate pH
values. Phosphate uptake into cells grown at pH 4.5 (’), 6.0 (.) and 8.0
(m) was measured at different pH values (pH 3.5–10) in 25-mM Tris-
succinate buffer in the presence of 3% glucose and 10-mM NaCl.
Average and SE values of triplicate assays using the same cell preparation
are plotted. Lower panel: immunodetection of Pho89 protein expressed
in cells grown at pH 4.5, 6.0 and 8.0 for 18.5 h.
FEMS Yeast Res 8 (2008) 685–696 c� 2008 Federation of European Microbiological SocietiesPublished by Blackwell Publishing Ltd. All rights reserved
689Characterization of the Pho89 phosphate transporter
highly pH-dependent, with a much lower phosphate trans-
port efficiency in cells grown at pH 4.5 as compared with
cells grown at pH 6.0 or 8.0. The results suggest that even if
the protein is synthesized and routed to the membrane over
this broad pH range, its functionality is strictly pH depen-
dent. Independent of whether cells were grown at pH 4.5, 6.0
or 8.0, the optimum pH of transport was 7.5 or higher,
consistent with the reported alkaline pH optimum of
Pho89-mediated phosphate transport in WT cells (Martinez
& Persson, 1998).
The Pho89 permease is a Na1-coupledphosphate transporter highly induced underalkaline conditions
Because Pho89 is the sole Pi uptake system in the quadruple
deletion mutant, we analyzed its dependence on alkali ions,
glucose and proton coupling at pH 8.5. For this purpose, we
used cells in which phosphate uptake was maximal, i.e. cells
grown at pH 8.0 on solid LPi medium to an A600 nm of 28
(Fig. 4a). In agreement with earlier observations on the
alkali-dependent Pi uptake in WT cells (Martinez & Persson,
1998), Na1 was found to be the preferred coupling ion with
a twofold advantage over K1 and Li1. The Na1-coupled
phosphate uptake activity of Pho89 in the quadruple dele-
tion mutant showed saturable uptake kinetics with Km and
Vmax values for Na1 coupling of 0.71� 0.01 mM and
2.2� 0.11mmol min�1 g�1 cells, respectively (calculated
from the double reciprocal plot, Fig. 5 and inset). Omission
of alkali ions or glucose (in the presence of Na1) reduced
Na1-coupled Pho89 activity six- and twofold, respectively
(Fig. 4a). Because the phosphate uptake activity, monitored
in the presence of Na1, was approximately threefold re-
duced in the presence of carbonyl cyanide m-chlorophenyl-
hydrazone (CCCP) (Fig. 4a), it appears that dissipation of
the proton gradient exerts a limitation on Na1 coupling of
the Pho89 transporter. In contrast, in WT cells grown at pH
6.0, phosphate uptake activity measured at pH 4.5 was
glucose dependent with no Na1 stimulation (Fig. 4b).
Phosphate uptake at pH 4.5 was reduced fivefold in the
presence of CCCP, stressing the tight proton coupling of the
phosphate uptake system under these conditions.
Determination of kinetic parameters (Km and Vmax) of
phosphate uptake by Pho84 and Pho89 in WT (Fig. 6a) and
quadruple mutant (Fig. 6b) cells grown on solid LPi media
at pH 4.5 and 8.0, respectively, was accomplished by
phosphate uptake measurement in the presence of glucose
at pH 4.5 (WT) and at pH 8.0 in the presence of the Na1
(quadruple deletion) strain. The calculated Km and Vmax
values for Pho84 at pH 4.5 and Pho89 at pH 8.0 were
24.64� 0.02mM and 5.56� 0.09 mmol min�1 g�1 cells and
37.68� 0.01mM and 7.32� 0.14 mmol min�1 g�1 cells,
respectively.
The distinct characteristics of phosphate transport in WT
cells grown at pH 4.5 and 8.0, i.e. at two extremes of the pH
growth range, prompted us to quantify the contribution of
the H1- and Na1-coupled phosphate uptake systems to
Fig. 4. (a) Effect of alkali ions, glucose and CCCP on phosphate uptake
by pho84D pho87D pho90D pho91D (SH6302) cells grown on agar
solidified buffered LPi media, pH 8.0. pho84D pho87D pho90D pho91D(SH6302) cells grown on LPi YPD plates at pH 8.0 for 16 h were collected
from the plates, washed and resuspended in cold Tris-succinate buffer at
pH 8.5. Phosphate uptake was measured in Tris-succinate buffer (pH 8.5)
supplemented with 3% glucose in the absence (� ) and presence of
5-mM NaCl (’), 5-mM KCl ( ), 5-mM LiCl (^), 5-mM NaCl and 60-mM
CCCP (�), and 5-mM NaCl without glucose ( ). Average and SE values of
triplicate assays using the same cell preparation are plotted. (b) Effect of
alkali ions, glucose and CCCP on phosphate uptake by WT (SH8246) cells
grown at pH 6.0 in LPi YPD medium. WT cells grown in LPi YPD medium
at pH 6.0 for 4.5 h were harvested, washed and resuspended in Tris-
succinate buffer, pH 4.5. Pi uptake was measured in 25-mM Tris-
succinate buffer at pH 4.5 in the absence of glucose (,), in the presence
of 3% glucose (m), in the presence of 3% glucose and 10-mM NaCl ( )
and in the presence of 3% glucose and 60-mM CCCP (�). Average and SE
values of triplicate assays using the same cell preparation are plotted.
FEMS Yeast Res 8 (2008) 685–696c� 2008 Federation of European Microbiological SocietiesPublished by Blackwell Publishing Ltd. All rights reserved
690 R.A. Zvyagilskaya et al.
phosphate uptake in cells grown on buffered solid LPi media
at different pH values. Phosphate uptake was assayed at pH
4.5 (optimal for the Pho84 system) and 8.0 (optimal for the
Pho89 system) in the presence and absence of 5 mM NaCl.
Activity at pH 4.5 without Na1 was taken as a measure of
the Pho84 system, while the activity in the pH 8.0 buffer
supplemented with 5 mM NaCl was taken as a measure of
the Pho89 system. As shown in Fig. 7, the H1-coupled
transport provides most of the phosphate uptake over the
pH range of growth. The contribution of the Na1-coupled
transport system to the total cellular phosphate uptake
increases progressively with increasing pH, reaching its
maximum in cells grown at pH 8.0. However, H1-coupled
transport is also maintained at pH 8.0, presumably as a
consequence of the broad pH range of Pho84-mediated
Fig. 5. Stimulatory effect of NaCl on phosphate uptake by pho84Dpho87D pho90D pho91D (SH6302) cells grown on LPi YPD plates at pH
8.2. pho84D pho87D pho90D pho91D (SH6302) cells grown on LPi YPD
plates at pH 8.2 for 19 h were collected from the plates, washed and
resuspended in cold Tris-succinate buffer at pH 8.0. Phosphate uptake
was measured in 25-mM Tris-succinate buffer, pH 8.0, supplemented
with 3% glucose and various concentrations of NaCl (0–20 mM) (’).
Average and SE values of triplicate assays using the same cell preparation
are plotted. The inset shows a double-reciprocal plot of the same data
points.
Fig. 6. Lineweaver–Burk plots describing Pi uptake by Pho84 and Pho89
in WT (a) and pho84D pho87D pho90D pho91D (b) cells as a function of
external Pi concentrations. (a) WT cells grown on solid LPi YPD plates at
pH 4.5 were collected, washed and resuspended in cold Tris-succinate
buffer at pH 4.5. Phosphate uptake was measured in 25-mM Tris-
succinate buffer, pH 4.5, supplemented with 3% glucose and various
concentrations of Pi. (b) pho84D pho87D pho90D pho91D cells grown
on solid LPi YPD plates at pH 8.0 were collected, washed and resus-
pended in cold Tris-succinate buffer at pH 8.0. Phosphate uptake was
measured in 25 mM Tris-succinate buffer, pH 8.0, supplemented with
3% glucose, 5-mM NaCl and various concentrations of Pi. Initial
velocities at Pi concentrations varying from 1.71 to 11 mM were deter-
mined over the first 60 s. Each point represents the mean of three
determinations using the same cell preparation.
FEMS Yeast Res 8 (2008) 685–696 c� 2008 Federation of European Microbiological SocietiesPublished by Blackwell Publishing Ltd. All rights reserved
691Characterization of the Pho89 phosphate transporter
uptake. A comparison of the pH dependence on the expres-
sion of the Pho89 transporter in WT cells grown at a
rigorously maintained pH of 4.5, 6.0, 7.0 or 8.0 under LPi
conditions also revealed a clear pH dependence with a
preferred pH of 7.0 and higher (Fig. 7, lower panel).
Notably, in contrast to the situation in the quadruple
deletion mutant, expression of Pho89 in the WT cells was
clearly suppressed at pH 4.5.
Phosphate activation of the PKA pathway
Because Pho89 is able to take over the role of the main
phosphate supplier in the quadruple deletion strain, we next
wished to examine whether Pho89 could also act as a
phosphate sensor in this mutant strain. It has recently been
shown that both Pho84 and Pho87 can act as phosphate
sensors for activation of the PKA pathway when phosphate
is added to cells starved previously for phosphate (Giots
et al., 2003). Pho84-mediated phosphate sensing and signal-
ing for activation of the PKA pathway seems to trigger the
removal of Pho84 from the plasma membrane in response to
elevated external phosphate concentrations (Mouillon &
Persson, 2005). Activation of the PKA pathway was mea-
sured by assaying trehalase activity as one of its principal
targets as described previously (Giots et al., 2003). Following
phosphate starvation, a high concentration of phosphate
(10 mM) was added to WT or the quadruple deletion
mutant cells. As can be seen in Fig. 8, no activation of
trehalase was detected in cells carrying the quadruple dele-
tion. This implies that even under conditions of hyperex-
pression where Pho89 has taken over the role of Pho84 as a
high-capacity uptake system, Pho89 can apparently not act
as a sensor for the activation of the PKA signaling pathway
unlike the Pho84 protein (Giots et al., 2003; Mouillon &
Persson, 2005),
Discussion
In S. cerevisiae, the ability to take up Pi from a phosphate-
limited environment is largely dependent on activities of the
high-affinity phosphate transporters, Pho84 and Pho89,
with Pho84 serving as the main high-capacity uptake system
in the normal habitat of this yeast. Although this transporter
has an acidic pH optimum, it is also highly active in the
neutral and alkaline pH ranges, partially overlapping with
the activity of the Pho89 transporter. Typically, in a WT
strain of S. cerevisiae, the maximal activity of the Pho89
transporter is about 100-fold lower than that of the Pho84
transporter (Pattison-Granberg & Persson, 2000). The
contribution of Pho89 to the total phosphate uptake is
rather limited even at alkaline pH values. For this reason,
the precise role of this transporter has remained obscure
and also its regulation and kinetics have been less well
characterized.
While PHO89 transcript levels are very low in a WT strain
under normal growth conditions, both a single deletion
strain (pho84D) and a quadruple deletion strain (pho84Dpho87D pho90D pho91D) exhibit an elevated PHO89 tran-
script level under both high- and low-Pi conditions (Fig. 1)
in agreement with other studies (Auesukaree et al., 2003).
Based on this, the quadruple deletion (pho84D pho87Dpho90D pho91D) strain was considered as a suitable model
strain for investigating the properties of the Pho89 trans-
porter in greater detail. First we showed that the higher
PHO89 transcript levels are associated with higher protein
and activity levels of Pho89. This allowed, for the first time,
a detailed characterization of the Pho89 transporter and its
effect on phosphate-regulated pathways. It is noteworthy
Fig. 7. Contribution of H1- and Na1-coupled phosphate transport
systems to the total phosphate uptake by WT cells (SH8246) grown on
LPi YPD plates at pH values ranging from 4.5 to 8.0. A600 nm of WT cells
was determined by suspending cells grown on two plates in 10 mL of the
appropriate buffer. Cells grown to an A600 nm of c. 36 on solid LPi media
at pH 4.5, 6.0, 7.0 and 8.0, respectively, were collected from the plates,
washed and resuspended in cold Tris-succinate buffer at pH 8.0.
Phosphate uptake was measured in 25-mM Tris-succinate buffer supple-
mented with 3% glucose, pH 4.5 (open bars), and in 25-mM Tris-
succinate buffer, pH 8.0, supplemented with 3% glucose and 15-mM
NaCl (filled bars), respectively. Average and SE values of triplicate assays
using the same cell preparation are plotted. Lower panel: immuno-
detection of Pho89 protein expressed in cells grown for 18.5 h on solid
LPi media at pH 4.5, 6.0, 7.0 and 8.5.
FEMS Yeast Res 8 (2008) 685–696c� 2008 Federation of European Microbiological SocietiesPublished by Blackwell Publishing Ltd. All rights reserved
692 R.A. Zvyagilskaya et al.
that the deletion of the low-affinity transporters, in line with
previous observations (Pinson et al., 2004), releases the
expression of PHO89 from the PHO pathway control,
resulting in elevated PHO89 transcription also under nor-
mally repressive HPi conditions. In agreement with the
transcription data of Fig. 1, the Pho89 protein levels were
transiently highly induced in a growth-dependent manner
(Fig. 2, lower panel). Under optimal conditions, maximal
protein expression was accompanied by a maximal phos-
phate uptake rate in the range of 7 mmol min�1 g�1 cells, the
highest value reported so far for S. cerevisiae. This can be
explained by the high level of Pho89 expressed in this strain
and also possibly, in part, by a trapped content of inorganic
phosphate due to an increased activity of the secreted acid
phosphatase Pho5, shown previously to be derepressed in
the quadruple deletion (pho84D pho87D pho90D pho91D)
(Auesukaree et al., 2003; Mouillon & Persson, 2005) and in
the pho84D strain (Pattison-Granberg & Persson, 2000).
Although the Pho89 transporter has been shown pre-
viously to have an alkaline pH optimum and a highly
inducible transcript level during growth at alkaline pH
values, a correlation with high protein levels under these
conditions has not been shown. We have shown (Fig. 3,
lower panel) that although the Pho89 protein is stably
expressed in the quadruple deletion mutant over a wide pH
range, with a slightly higher protein expression level under
alkaline conditions, Pho89-mediated transport activity (Fig.
3, upper panel) does not correlate with the protein expres-
sion levels, being restricted only to the neutral/alkaline pH
range. The effect of pH on phosphate transport can have
several causes. The permease could be selective for bivalent
phosphate ions as shown for sodium-coupled transport in
mammals (Moschen et al., 2001). Another possibility might
be that protons and Na1 bind to the same transmembrane
domain with a possible conformational change as has been
proposed for mammalian type II Na1/Pi transporter (de la
Horra et al., 2000) or an effect on the charge distribution
within the transporter itself. Although Pho89-mediated
phosphate uptake is difficult to estimate in the WT strain,
we have, using an elaborated method allowing cells to grow
at rigorously maintained pH values, clearly demonstrated
that the protein is expressed and highly induced under
neutral and alkaline growth conditions in this strain (Fig.
7). This is in contrast to the situation in the quadruple
deletion strain where a similar expression level of Pho89 is
seen over a broad pH range of 4.5–8.0 (Fig. 2). At increased
pH values, the contribution of the Na1-stimulated Pho89
transport to the total uptake of phosphate is elevated (Fig.
7). This demonstrates the overlap between the H1-coupled
Pho84 and Na1-coupled Pho89 high-affinity uptake sys-
tems, which are both active under phosphate-limiting con-
ditions. Together, these findings suggest that Pho89
transports phosphate using a highly selective symport
mechanism and that Pho89 has the design and functional
properties to make it an important phosphate transporter in
this yeast in spite of the organism’s natural preference for an
acidic/neutral habitat. We investigated the properties and
regulation of the phosphate transport mediated by Pho89 in
detail.
By studying Pi uptake in the quadruple deletion mutant,
we have been able to establish its strong Na1-dependence in
comparison with other cations, e.g., Li1 and K1 (Fig. 4a)
and we have compared this with its behavior observed in the
WTstrain (Fig. 4b). The presence of glucose was required for
the high transport activity both in WT and in quadruple
mutant cells, independent of the preference of the two
transport systems. The strong effect of glucose is not likely
Fig. 8. Phosphate-induced activation of trehalase and Pi uptake in WT
and in pho84D pho87D pho90D pho91D cells. (a) Pi was added to
phosphate-starved cells at pH 4.5 or pH 8.0 and trehalase activity was
measured as a function of time. The specific activity of WTcells at pH 4.5
( ) and pH 8.0 (n) and of pho84D pho87D pho90D pho91D cells at pH
4.5 (m) and pH 8.0 (�) is expressed as nanomoles of glucose released per
minute and milligram of protein. (b) Pi uptake activity measured under
the same conditions in WTcells at pH 4.5 (light gray bar) and pH 8.0 (dark
gray bar) and in pho84D pho87D pho90D pho91D at pH 4.5 (black bar)
and pH 8.0 (white bar).
FEMS Yeast Res 8 (2008) 685–696 c� 2008 Federation of European Microbiological SocietiesPublished by Blackwell Publishing Ltd. All rights reserved
693Characterization of the Pho89 phosphate transporter
to be mediated by transcriptional regulation. It is known
that glucose positively regulates plasma membrane H1-
ATPase by inducing conformational changes (Lecchi et al.,
2005). H1-ATPase creates the proton electrochemical gra-
dient across the plasma membrane that is required for ionic
homeostasis and the uptake of nutrients (Serrano, 1991).
Disturbance of ionic homeostasis by reduced activity of the
H1-ATPase in the absence of glucose can result in reduction
of phosphate uptake. The protonophore CCCP had an effect
in both strains. The reason for the pronounced decrease in
Pi uptake into the quadruple deletion strain at pH 8.5 may
be due to either a direct effect on a possible H1-coupling of
the Pho89 transporter, an indirect effect mediated via other
H1-coupled membrane transporter or a combination here-
of. Besides its role in collapsing the proton electrochemical
gradient, CCCP was recently found to influence the phos-
pholipid distribution between the inner and the outer layers
of the plasma membrane (Stevens & Nichols, 2007).
Although inhibition of the flip–flop of phospholipids might
inhibit Pi uptake mediated by the H1-coupled as well as the
Na1-coupled transport system, it is less likely that this
process is fast enough to influence the uptake under the
conditions used in this study.
The kinetic parameters of the Pho89 transporter under
optimal hyperexpressive conditions were evaluated (Fig. 5).
When assayed for phosphate uptake at pH 8.0 the Km and
Vmax values for Pho89 expressed in the quadruple deletion
were 37.68� 0.01 mM and 7.32� 0.14 mmol min�1 g�1 cells,
values close to those of Pho84 in WT cells (24.64� 0.02 ıM
and 5.56� 0.09 mmol min�1 g�1 cells, respectively) when
phosphate uptake was assayed at for Pho84 optimal condi-
tions (Fig. 6a and b). The Km value for the Na1-coupled
uptake system in WT cells was reported previously to be
0.6–1 mM at pH 7.2 (Roomans et al., 1977; Roomans &
Borst-Pauwels, 1979). The Km and Vmax values for
the Pho89 Na1-coupling were 0.71� 0.01 mM and
2.24� 0.11mmol min�1 g�1 cells, respectively (Fig. 5).
We also investigated the correlation between phosphate
transport and signaling in the phosphate-starved cells ex-
pressing Pho89 at different pH values. Measurement of Pi
transport has shown that at alkaline pH, the quadruple
deletion mutant has a strong phosphate uptake while at
acidic pH it displayed c. 10-fold lower transport activity
(Fig. 8). This result again indicated a strong pH dependence
of Pho89 activity. On the other hand, phosphate-induced
trehalase activation was abolished in the quadruple deletion
mutant under both conditions. This result indicates that
despite improved transport activity at alkaline pH, Pho89
cannot provide efficient signaling of phosphate availability
for activation of the PKA pathway. Moreover, these data
clearly serve as evidence that transport of phosphate is not
enough for mediation of rapid phosphate signaling. It also
demonstrates that phosphate is not sensed intracellularly in
the cells expressing only Pho89. Uptake in WT cells was
almost not affected by differences in the pH, reflecting a
broad adaptation capability of yeast cells in this regard.
Phosphate-induced trehalase activation was also found to be
independent of pH. Most probably, phosphate signaling in
this case was mediated by the Pho84 transporter (Giots
et al., 2003), which is active at a broad pH range. The
absence of signaling with Pho89 further supports the con-
cept that rapid phosphate signaling for activation of the
PKA pathway in yeast is mediated by specific phosphate
transporters–sensors or transceptors, like Pho84 and Pho87
(Giots et al., 2003). This situation is similar to rapid amino
acid signaling for activation of the PKA pathway where
especially the Gap1 amino acid carrier appears to mediate
the process as a transceptor (Donaton et al., 2003).
Acknowledgements
This work was supported by grants from the Swedish
Research Council (621-2003-3558) and the Faculty Fund of
Kalmar University to B.L.P.; by Russian Foundation for
Basic Research (grant 06-04049687) and Russian Academy
of Sciences (cellular and molecular biology) grants to
R.A.Z.; grants from the Fund for Scientific Research –
Flanders and the Research Fund of the Katholieke Universi-
teit Leuven (Concerted Research Actions) to J.M.T.; a travel
fellowship to DS from Petra and Karl-Erik Hedborgs Foun-
dation; and a Marie Curie fellowship to Y.P. from E.C. F.L.
was supported by a PhD program within the Graduate
Research School in Pharmaceutical Sciences at Kalmar
University. We thank Prof. Satoshi Harashima (University
of Osaka, Japan) for providing the yeast strains SH8246,
SH8333 and SH6302 used in this study.
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