Biotransformation and bioaccumulation of arsenic by Brevibacillus brevis isolated from arsenic...

10
IOSR Journal Of Environmental Science, Toxicology And Food Technology (IOSR-JESTFT) e-ISSN: 2319-2402,p- ISSN: 2319-2399. Volume 3, Issue 1 (Jan. - Feb. 2013), PP 01-10 www.Iosrjournals.Org www.iosrjournals.org 1 | Page Biotransformation and bioaccumulation of arsenic by Brevibacillus brevis isolated from arsenic contaminated region of West Bengal. Satabdi Banerjee 1 , Jayjit Majumdar 1 , Alok Chandra Samal 1 , Piyal Bhattachariya 2 Subhas Chandra Santra 1 1 Department of Environmental Science, University of Kalyani, West Bengal, India 2 Department of Environmental Science, Kanchrapara College, Kanchrapara, West Bengal India Abstract: Microorganisms influence the fate of metals in environment. Increasing anthropogenic and geogenic activity had increase the risk of arsenic pollution and this has forced the future research area to involve microbes-metal toxicity to achieve bioremediation. The present study deals with the role of arsenite transforming bacteria and incorporates them into remediation design. Sample was collected from Haringhata in Nadia district which is a known arsenic contaminated zone. Out of six isolated bacteria one bacterium revealed as arsenic tolerant bacteria which shows molecular similarity with Brevibacillus brevis from 16s rRNA studies. It can tolerate upto 1000 mg/L of arsenite and 500 mg/L of arsenate. Both the arsenic species has toxic effects on its protein concentration. The strains can tolerate upto a certain limit after that their growth ceased. This strain can accumulate and also transform arsenite to arsenate. The transformation capacity of strain was assessed qualitatively and quantitatively. The strain can transform 90% of arsenite to arsenate. But the transformation capacity only reveals as detoxification mechanism and has no relation with their respiration. Morphological biochemical and molecular identification was done. As arsenate is absorbed into iron oxyhydroxides and get immobilize thus a remediation mechanism can be designed with this strain. Keywords: Arsenic, Bioaccumulation, Biotransformation, Bioremediation, Arsenic oxidising bacteria. I. Introduction: Arsenic contaminated in ground water has turned into the gravest catastrophe of nineteenth century specially encompassing Bangladesh, India (West Bengal), China, Taiwan, Vietnam, USA, Argentina, Chilli, Mexico etc [1]. Increasing dreadful concentration of arsenic in ground water of Bengal basin has been described as the greatest mass poisoning in human history. More than a million populations is badly affected [2]. Unfortunately such a dangerously contaminated ground water is the principal source of drinking water as well as irrigation water of this vast flood plain. Thus the entire array of human population and domestic animal living here is therefore compelled to this intake of poison day after day. Thus it is imperative to explore all possible means to combat such menace. The mobilization of arsenic from soil to ground water depends on microbial activity [3].The exposure of microorganisms to toxic metals on early earth had helped to evolve several metal resistant mechanisms in them.Microorganisms plays an important role in arsenic mobilization by changing its oxidation state. Several microorganisms (bacteria, fungi, algae) had been reported which actively participates in arsenic biogeochemical cycle [4]. Some of the microorganisms are facultative where some are obligatory, as some metabolize arsenic for energy generation where some for detoxification [5]. The ecology of arsenic in environment depends on three mechanisms as methylation, oxidation and reduction [6]. Microbes conduct these three processes. The environmental impact of dissimilatory arsenate reducing prokaryotes (DARPS) has only recently been realized [7]. The reduction of arsenate is energetically favourable when coupled with oxidation of organic matter like lactate, malate, fumarate because the As(V)/As(III) oxidation/reduction potential is +135 mV [8]. In a recent study in Taiwan two arsenate reducing bacteria, Pseudomonas stutzeri and Bacillus cereus were isolated and they can transform As(V) to As(III) from lower arsenate concentration (100μg/L) to higher arsenate concentration (750 μg/L) [9]. The process of dissimilatory As(V) reduction occurring in near surface hyporheic zones greatly affects the transport and speciation of arsenic in fresh water streams. But the detoxification of arsenic only relates with arsenite oxidation where arsenite transfers into arsenate which is less toxic. Interest in this subject has resulted in the recent isolation of several novel species of heterotrophic and autotrophic aerobic As (III) oxidizers from arsenic rich environment [10]. Girhing and Banfield [11] isolated a thermophilic species of Thermus( strain HR 13) from an As rich hot spring The physiological role of arsenite oxidizers had been reported in well known organism Alcaligenes faecalis [12]. Physiologically diverse arsenite oxidizers involve both heterotrophic and chemolithoautotrophic group. Heterotrophic oxidation of As (III) is viewed primarily as a detoxification

Transcript of Biotransformation and bioaccumulation of arsenic by Brevibacillus brevis isolated from arsenic...

IOSR Journal Of Environmental Science, Toxicology And Food Technology (IOSR-JESTFT)

e-ISSN: 2319-2402,p- ISSN: 2319-2399. Volume 3, Issue 1 (Jan. - Feb. 2013), PP 01-10 www.Iosrjournals.Org

www.iosrjournals.org 1 | Page

Biotransformation and bioaccumulation of arsenic by

Brevibacillus brevis isolated from arsenic contaminated region of

West Bengal.

Satabdi Banerjee1, Jayjit Majumdar

1, Alok Chandra Samal

1, Piyal

Bhattachariya2 Subhas Chandra Santra

1

1 Department of Environmental Science, University of Kalyani, West Bengal, India

2 Department of Environmental Science, Kanchrapara College, Kanchrapara, West Bengal India

Abstract: Microorganisms influence the fate of metals in environment. Increasing anthropogenic and geogenic

activity had increase the risk of arsenic pollution and this has forced the future research area to involve

microbes-metal toxicity to achieve bioremediation. The present study deals with the role of arsenite

transforming bacteria and incorporates them into remediation design. Sample was collected from Haringhata in

Nadia district which is a known arsenic contaminated zone. Out of six isolated bacteria one bacterium revealed

as arsenic tolerant bacteria which shows molecular similarity with Brevibacillus brevis from 16s rRNA studies.

It can tolerate upto 1000 mg/L of arsenite and 500 mg/L of arsenate. Both the arsenic species has toxic effects

on its protein concentration. The strains can tolerate upto a certain limit after that their growth ceased. This strain can accumulate and also transform arsenite to arsenate. The transformation capacity of strain was

assessed qualitatively and quantitatively. The strain can transform 90% of arsenite to arsenate. But the

transformation capacity only reveals as detoxification mechanism and has no relation with their respiration.

Morphological biochemical and molecular identification was done. As arsenate is absorbed into iron

oxyhydroxides and get immobilize thus a remediation mechanism can be designed with this strain.

Keywords: Arsenic, Bioaccumulation, Biotransformation, Bioremediation, Arsenic oxidising bacteria.

I. Introduction: Arsenic contaminated in ground water has turned into the gravest catastrophe of nineteenth century

specially encompassing Bangladesh, India (West Bengal), China, Taiwan, Vietnam, USA, Argentina, Chilli,

Mexico etc [1]. Increasing dreadful concentration of arsenic in ground water of Bengal basin has been described

as the greatest mass poisoning in human history. More than a million populations is badly affected [2].

Unfortunately such a dangerously contaminated ground water is the principal source of drinking water as well as

irrigation water of this vast flood plain. Thus the entire array of human population and domestic animal living

here is therefore compelled to this intake of poison day after day. Thus it is imperative to explore all possible

means to combat such menace.

The mobilization of arsenic from soil to ground water depends on microbial activity [3].The exposure

of microorganisms to toxic metals on early earth had helped to evolve several metal resistant mechanisms in

them.Microorganisms plays an important role in arsenic mobilization by changing its oxidation state. Several microorganisms (bacteria, fungi, algae) had been reported which actively participates in arsenic biogeochemical

cycle [4]. Some of the microorganisms are facultative where some are obligatory, as some metabolize arsenic

for energy generation where some for detoxification [5]. The ecology of arsenic in environment depends on

three mechanisms as methylation, oxidation and reduction [6]. Microbes conduct these three processes. The

environmental impact of dissimilatory arsenate reducing prokaryotes (DARPS) has only recently been realized [7]. The reduction of arsenate is energetically favourable when coupled with oxidation of organic matter like

lactate, malate, fumarate because the As(V)/As(III) oxidation/reduction potential is +135 mV [8]. In a recent

study in Taiwan two arsenate reducing bacteria, Pseudomonas stutzeri and Bacillus cereus were isolated and

they can transform As(V) to As(III) from lower arsenate concentration (100µg/L) to higher arsenate

concentration (750 µg/L) [9].

The process of dissimilatory As(V) reduction occurring in near surface hyporheic zones greatly affects the transport and speciation of arsenic in fresh water streams. But the detoxification of arsenic only relates with

arsenite oxidation where arsenite transfers into arsenate which is less toxic. Interest in this subject has resulted

in the recent isolation of several novel species of heterotrophic and autotrophic aerobic As (III) oxidizers from

arsenic rich environment [10]. Girhing and Banfield [11] isolated a thermophilic species of Thermus( strain HR

13) from an As – rich hot spring The physiological role of arsenite oxidizers had been reported in well known

organism Alcaligenes faecalis [12]. Physiologically diverse arsenite oxidizers involve both heterotrophic and

chemolithoautotrophic group. Heterotrophic oxidation of As (III) is viewed primarily as a detoxification

Biotransformation and bioaccumulation of arsenic by Brevibacillus brevis isolated from arsenic

www.iosrjournals.org 2 | Page

reaction that converts As(III) encountered in the cells outer membrane into less toxic form As(V) [7].

Chemolithoautotroph arsenite oxidizers couple the oxidation of arsenite to the reduction of either oxygen or

nitrate and use the energy derives to fix CO2 into the organic cellular matter and achieve growth [8]. Several species like Thermus (strain HR 13) and Ectothiorodospira clade of Eubacteria had been identified as arsenite

oxidizers. Recently As (III) oxidation has been identified in some more bacteria including Pseudomonas [13],

Alcaligenes [14], Thiomonas, Herminiimonas, Agrobacterium, Thermus thiomonas [13].

West Bengal is one of the most contaminated sites in India. Arsenic sedimentation in Bengal delta

basin is from Pleistocene and Holocene era [15] and this contamination spreads by both anthropogenic and

geogenic reasons .Total 88,750 km2 in West Bengal has been identified as arsenic contaminated zone among

which, 861 km2 areas has been identified as Highly affected zones this include Nadia, North and South 24

Paraganas, Murshidabad and Kolkata districts [16].In West Bengal most crop fields are contaminated with

arsenic rich irrigated water [17]. Arsenic makes its way from crop fields to food chain. Arsenic is inflowing in

50 million people by contaminated water only [18]. Thus a critical measure is needed to stop this menace.

Use of micro organisms in arsenic ecology is being carried out all over the world. Several arsenic resistant bacteria were found from Taiwan [19], Bulgaria [20], USA [8], and China and from other places.

Suresh et al (2004) isolated another arsenic resistant bacteria Deinococcus indicus from Chakdah in West

Bengal [21]. Shivaji et al (2005) isolated a novel strain Bacillus arsenicus which can resist arsenic upto 20 mM

arsenate and 0.5mM arsenite [22]. The potential detoxification mechanism of arsenic detoxification of bacteria

is related with ars genotype [23, 24]. The ars genotype is greatly diversed. It is reported that arsenite oxidizing

bacteria Pseudomonas putida OS-3 (AY952322), which has arsB genes, and Agrobacterium tumefaciens, which

has a signal transduction system composed of aoxS-aoxR-aoxA-aoxB-cytc2, have been isolated from arsenic-

contaminated water and soil [25].

Thus this study will be helpful to characterize the arsenite oxidizing bacteria from arsenic contaminated

soil .As arsenate gets precipitate in iron compounds thus it will immobilize the arsenic species and reduce the

arsenic contamination. This present study can help to form a management mechanism can be adopted in arsenic

affected areas to minimize the arsenic mobilization and contamination in soil.

II. Materials Methodology:

2.1Study area and Sampling: Surface soil samples (0-15 cm) were collected in three random replicates from crop fields of

Saontalpara village in Haringhata of Nadia district (Fig 1). In previous studies this location is reported as

arsenic prone zone, as it appears that the groundwater of entire seventeen blocks of Nadia district contains arsenic above WHO guideline value of arsenic in drinking water (10 µg/L) and Indian Standard value (50 µg/)

[26].

Figure 1. Map of study site Haringhata block, Nadia district.

West Bengal

INDIA

Haringhata

Chu

rni R

iver

Ganga R

iverJalangi R

iver

Nadia

Murshidabad

Bangladesh

Bangladesh

Hooghly

Burdwan

Biotransformation and bioaccumulation of arsenic by Brevibacillus brevis isolated from arsenic

www.iosrjournals.org 3 | Page

2.2 Soil Analysis:

pH of soil sample was measured by Electrometric method with the help of a pH meter using

combination Glass electrode. Organic Carbon was done by Walkley and Black method [27]. Chloride, Nitrate, Phosphate, Sodium and Potassium content were estimated by methods prescribed by APHA [28]. The total

nitrogen content was estimated by Kjeldahl method (APHA 1992). The samples were digested following heating

block digestion procedure for Arsenic measurement [26]. The amount of arsenic was estimated by Atomic

absorption Spectrophotometer (Perkin Elmer, Analyst 400) accompanied with hydride generation system [29].

2.3 Isolation of arsenite resistant Bacteria:

The bacterial strain was isolated in iron bacteria isolating media containing Diammonium sulphate

(0.5gm), glucose(0.15gm), Calcium Carbonate (0.1 gm), Dipotassium hydrogen phosphate (0.05gm),

Magnesium sulphate, 2H20 (0.05gm) , Potassium chloride (0.05 gm), Calcium nitrate (0.01gm), thiamine (0.4

mg/5ml) ,Cyanocobalamin ( 0.01mg/5ml), Agar (15.0 gm) in 1000 ml of distilled water, pH 7.0. The plates were

allowed to incubate at 37˚ c for 24 hours. Pure culture was obtained by subculture and pure culturing technique from the isolated colonies [20].

2.4 Determination of Minimum Inhibitory Concentration of Arsenic:

Cup assay method was used to determine the maximum tolerable concentration of the strains for both

arsenate and arsenite [20].Apart from arsenic minimum inhibitory concentration was also determined for

mercury and cadmium.

2.5 Determination of Growth response for Arsenite and Arsenate:

The bacteria were grown in both arsenate and arsenite containing iron bacteria isolating broth media.

The media contained 20 mg/L, 50 mg/L, 100 mg/L, 500 mg/L and 1000 mg/L concentrations of arsenate and

arsenite within their tolerable limit .It was incubated at 37˚ c for 24 hours. Optical density was measured at 420

nm at alternate days for at least 7 days [20].

2.6 Determination of Bioaccumulation of Arsenic:

Arsenic can be stored intercellular, called bioadsorption. Bacterial strain was grown on arsenic

containing media and 1 ml of media containing biomass was separated in alternate days .The media was

centrifuged at 10,000 rpm for 5 min to separate the media and biomass. The supernatant and residue was

isolated. Nitric acid was added to the samples for sample digestion. The samples were heated till they become

colorless. The samples were then diluted with distilled water into 10 ml. The arsenic content was then measured

by Atomic Absorption Spectrophotometry [30].

2.7 Identification of the Bacterial Strains:

2.7.1 Morphometric Identification Gram staining and cell morphology was investigated under microscope (1000x) [20]. Biochemical

properties of the isolates were tested by following, Catalase test, Citrate utilization test, Methyl Red test,

hydrogen sulfide test, Starch hydrolysis test, Carbohydrate Fermentation test, and Vogues Proskauer test [31] for

identification.

2.7.2 Isolation of Genomic DNA

DNA extraction from the bacterial strain was performed using, Genei DNA isolation kit (KT 159L)

according to OHBA (2005) [32]. Each bacterium was transferred to liquid growth medium and incubated for 48

hours. Pellets were collected from 1.5 ml of bacterial cultures. Briefly the pellet was suspended in 100 µL of

Bacterial lysis buffer and incubates for 30 min at 37ºc.After that 20 µL of Proteinase K and 180 µL of lysis

buffer I was added and incubate for 3 hours at 55ºc. Centrifuged were done and 4 µL of RNase A and 200 µL of

lysis buffer II was added to the supernatant. Then absolute alcohol was added. After adding the wash buffers the complete removal of ethanol was done at 70ºc in a dry bath. Finally the DNA was dried and dissolved in pre

warmed elution buffer. The suspension was used as DNA template for subsequent PCR amplification.

2.7.3 PCR amplification of 16s ribosomal rRNA

The metagenomic DNA was used for PCR amplification of the 16S rRNA gene, by using specific 8UF

primers (5’- AGA GTT TGA TCM TGG CTC AG - 3’) and 519B - R (5’-GTA TTA CCG CGG CGG CKG

CTG -3’). PCR reaction contained PCR 6µL10X buffer (20mM Tris-HCl (pH 8.4), 50mM KCl),3 µL MgCl2, 5

µL initiator dNTP, 1 µL Taq DNA polymerase (InvitrogenTM, São Paulo, Brazil) and 4 µL template DNA, in a

final volume of 40 μL. Samples were then placed in a thermal cycler for amplification of the gene [32]. The

Biotransformation and bioaccumulation of arsenic by Brevibacillus brevis isolated from arsenic

www.iosrjournals.org 4 | Page

1.5Kb amplicons were analyzed through electrophoresis and removed from the gel (1% agarose gel) through gel

purification kit (Genei, Pl.No.KT02) [32].

2.7.4 Analysis of Sequence Data

The NCBI BLAST program was used to analyze the sequence data of the isolate. Distance analysis and

phylogenetic tree construction were performed using the neighbor joining method (NJ) of MEGA vers5.

2.8 Determination of the effect of arsenic on protein concentration of the isolated bacteria:

The culture was incubated at 30◦C for 24 h and cells were harvested by centrifugation at 14000 rpm for

10 min, washed twice in 50 mM phosphate buffer (pH7) and re suspended in 5ml of 50 mM phosphate buffer

(pH7).Cells were disrupted by sonication for 15 sec and centrifuged at 14000 rpm for 1 h at 4◦C.The pellet re-

suspended in 50 mM phosphate buffer (pH 7) represents the membrane fraction while the supernatant represents

the soluble fraction. The protein concentration was estimated by the Lowry method after hydrolysis of the cells

in 0.4 N NaOH at 100 ◦c for 10 min. Bovine serum albumin was used as standard [20]

2.9 Determination of Transforming Ability of the isolated Bacteria:

The verification of the transforming ability of the isolated bacteria was carried out by the usage of

AgNO3 method. Agar plates were flooded with a solution of 0.1M AgNO3. A brownish precipitate revealed the

presence of arsenate in the medium (arsenite oxidizing bacteria), while the presence of arsenite was detected by

a bright yellow precipitate (arsenate reducing bacteria) [20]. The abilities of the bacterial isolates to oxidize As

(III) or reduce As (V) were further quantitatively determined. Bacterial isolate was treated with 50 mg/L of

arsenite solution and after 48 h of incubation, the bacterial culture was centrifuged and arsenic species were

measured by Atomic Absorption Spectrophotometer followed by Mercury Hydride Generation System.

Speciation was done by using 0.2 M Citric acid as carrier solution and 0.4% sodium borohydrate as reductant. In

this process only arsenite was detected. The total arsenic was measured with 10% Hydrochloric acid as carrier

solution and 0.4% sodium borohydrate as reductant [33]. The amount of arsenate was calculated from the two values and the transforming capacity was presented in percentage. The quantitative transformation test was

further analysed with different incubation time. As the strains were inoculated with 50 mg/L of arsenic dose and

incubated. The first batches were incubated for 24 hours, second batch for 48 hours and third batch for 72 hours.

The test was done in replicates and arsenic species were measured by Atomic Absorption Spectrophotometer

with the help of above method.

2.10 Statistical analysis:

All experiments were done in triplicates and results are presented in mean value with standard deviation.

III. Results:

3.1 Physicochemical characteristics of Soil: Some selected physicochemical characteristics of soil sample were ascertained. The pH content was

alkaline. Organic Carbon was 1.2(±0.15) %. Chloride content was 7.1(±0.12) mg/kg. Nitrate and phosphate content were low as 0.57(±0.02) mg/kg and 0.35 (±0.03) mg/kg respectively. The Sodium and potassium

amount were 9.4 mg/kg and 4.6 mg/kg respectively. Arsenic content is high as 7.3(± 0.02) mg/kg and Nitrogen

content is low 0.57 (± 0.02) mg/kg.

3.2 Isolation of Metal resistant Bacteria: Six aerobic bacterial isolates were obtained in iron bacteria isolating media. Out of which one strain (S1)

revealed as arsenic resistant bacteria when grown in different arsenite and arsenate containing media. The cup

assay test was done and it was found that the strain S1 can tolerate arsenite 1000 mg/L and 500 mg/L for

arsenate.

3.3 Multiple Metal resistances: For mercury and Cadmium the strain can grow upto 300 mg/L. Thus among these three metals

bacterial strain showed highest tolerant characteristics for arsenic.

3.4 Arsenic Tolerance test: The strain can tolerate higher concentration of arsenate (500 mg/L) and arsenite (1000 mg/L). S1 strain

showed highest growth rate in case of 100 mg/L of both arsenite and arsenate containing media.S1 strain can

grow in arsenate containing media upto 7th day but after 5th day their growth decreases (Fig 2). The strain exhibit

increased growth rate in arsenite up to 7th day. After 5th day the growth rate decreases of all concentrations. So

the growth rate of the strain does not differ with incubation time for both the arsenite and arsenate containing

Biotransformation and bioaccumulation of arsenic by Brevibacillus brevis isolated from arsenic

www.iosrjournals.org 5 | Page

media. It varies with the arsenic species as growth rate in arsenite containing media is much higher than in

arsenate containing media (Fig 2& 3). The growth rate also varies with different concentrations as growth rate

increases with increasing concentration but after100 mg/L the growth rate decreased in both factors. This result suggested that the strain has developed metal resistant systems in an attempt to protect sensitive cellular

components. In general, microbial ability to grow at high metal concentration is found coupled with a variety of

specific mechanisms of resistance and environmental factors. Mechanisms, of resistance by microorganism

include microbial surface sorption, enzymatic transformation, and precipitation by oxidation/reduction reaction

and biosynthesis of metal binding proteins or extracellular polymers; whereas environmental factors may

include the surrounding pH and redox potential, metal speciation, soil particulates and soluble organic matters.

Figure 2. Growth response of S1 strain for As (V)

Figure 3.Growth Response of S1 strain for As (III)

3.5 Effect of arsenic on Protein Concentration: Arsenite has effect on the protein concentration of the strain. From the Fig 4, it is exhibited that with

increased dose of arsenite the protein concentration of the strain decreased. The protein concentration also

decreased with increased incubation time. Arsenate has more effect than arsenite (Fig 5) as the protein

concentration is less in case of arsenate treated samples. The results of this study support the growth response of

the strain against arsenite and arsenate containing media. Thus from these two analysis it is revealed that the arsenate has more toxic effect on this strain than arsenite. The defence mechanism can resist upto a certain

incubation time. Also after 500 mg/L of concentration the strain failed to respond. The strain thrives

successfully in controlled condition.

0

0.01

0.02

0.03

0.04

0.05

0.06

0 hr 1st day 3rd day 5th day 7th day

Ab

sorb

ance

Time

control

20 mg/L

50 mg/L

100 mg/L

500 mg/L

0

0.1

0.2

0.3

0.4

0.5

0.6

0 hr 1st day 3rd day 5th day 7th day

Ab

sorb

ance

Time

control

50 mg/L

100 mg/L

500 mg/L

1000 mg/L

Biotransformation and bioaccumulation of arsenic by Brevibacillus brevis isolated from arsenic

www.iosrjournals.org 6 | Page

Figure 4. Effect of arsenite on protein concentration

Figure 5. Effect of arsenate on protein concentration.

3.6 Arsenic Bioaccumulation Test: From 50 mg/L of arsenic concentration the strain accumulate 24.8mg/L of arsenic after 24 hours. The

accumulation amount decreased after 48 hours to 18.9 mg/L (Fig 6). Again the accumulation increases after 72

hours at 27.1 mg/L. Thus the strain can accumulate 50% of total arsenic from arsenic containing media.

Figure 6. bioaccumulation of arsenic with different incubation time

00.10.20.30.40.50.60.70.8

MF SF MF SF MF SF

control 100 mg/L 500 mg/L

Pro

tein

co

nce

ntr

ati

on

in

mg/

gm

strain with different concentration of arsenite(AsIII)

24 hours

48 hours

72 hours

00.10.20.30.40.50.60.7

MF SF MF SF MF SF

Control 100 mg/L 500 mg/L

Pro

tein

co

nce

ntr

ati

on

mg/

gm

strains with different concentration of Arsenate(AsV)

24 hours

48 hours

72 hours

0

5

10

15

20

25

30

24 hours 48 hours 72 hours

arse

nic

co

nce

ntr

ati

on

in m

g/L

Incubation time

Biotransformation and bioaccumulation of arsenic by Brevibacillus brevis isolated from arsenic

www.iosrjournals.org 7 | Page

3.7 Arsenic Transformation Test: In the present work, the isolates were tested with AgNO3 test. The silver nitrate test is based on the

quality reaction between AgNO3 and arsenite or arsenate ions. The interaction of AgNO3 with As[III] generates

bright yellow precipitate and As[V] generates brownish precipitate. In this study the resulting precipitates

containing Arsenic were coloured light brown red of Ag3AsO4 (silver orthoarsenate) due to presence of Arsenate As(V) (Fig 7).Thus the isolate (S1) revealed as arsenite oxidizing bacteria. The strain was revealed as

arsenite oxidizing bacteria.

Figure 7. Brown precipitate indicates presence of arsenate

Further the arsenic transforming capacity was tested quantitatively with the help of Atomic Absorption

Spectrophotometer.

Figure 8. Transforming capacity of Strain S1

It was found that the total arsenic concentration was 24.88 mg/L and arsenite concentration was 1.304 mg/L.

This results exhibit that the arsenate value is 23.57 mg/L i.e. the transformation capacity of the strain is 94.73%

(Fig 8).Further the transformation capacity of the strain was assessed with different incubation time (Fig 9). The

transformation capacity first decreased at 48 hours then increased after 72 hours. After 24 hours the

transformation capacity was 94% after that it decreased to 88% and then again after 72 hours it again increased to 90%.

Figure 9. Transforming capacity of strain S1 with different incubation time

0 5 10 15 20 25

Total arsenic concentration

Arsenite concentration

Arsenate concentration

Arsenic concentration in mg/L

848586878889909192939495

24 hours 48 hours 72 hours

arse

nic

Tra

nfo

rmat

ion

cap

acit

y (%

)

Time

Biotransformation and bioaccumulation of arsenic by Brevibacillus brevis isolated from arsenic

www.iosrjournals.org 8 | Page

3.7 Identification of the strain Morphological, and biochemical characteristics of the bacterium was evaluated. S1 strain is Gram

positive, rod in nature. The strain shows positive result for Catalase test and starch hydrolysis test. Whereas it

shows negative result for citrate utilization test, MR-VP test, Hydrogen sulphide test. Confirmation of the

taxonomical status was confirmed by molecular method. To confirm the species, the partially amplified

fragment (600 bp) of 16s rRNA gene was uploaded to NCBI website (National Centre for biotechnology

Information). From the blast results it is revealed that this gene is 98% homologous to Brevibacillus brevis

NBRC 100599. The other closely related species are Bacillus coagulans, Geobacillus thermoglucosidasius

C56_YS93. The phylogenetic tree for the isolated arsenic transforming bacterium and their close relatives is

shown in Fig 10.

Figure .10 phylogenetic tree of the strain S1

IV. Discussion Arsenic pollution in the Nadia district is hardly affected. Utmost places of this districts have arsenic

concentration in ground water and soil above WHO permissible value [16] .Quite a few studies were carried out

with arsenic flow in food chain but there is a lack of studies in microbial role in arsenic ecology in this area [29].

As a consequence we investigated the role of arsenic resistant bacteria in soil. The mobility of arsenic depends on certain factors those are soil solution chemistry, (pH and redox

condition), solid composition, arsenic bearing phases, adsorption and desorption, biological transformation,

volatilizations and cycling of arsenic [34]. In recent era use of microbial metabolism for bioremediation is a

useful tool. A microbial metabolism includes the biochemical reactions or pathways to uptake and circulates the

metal [8]. A number of microbes can uptake and transform arsenic in environment. Arsenate reduction and

subsequent arsenite efflux are common in Archea, bacteria and fungi [35]. But the roles of arsenite oxidizing

bacteria are important because they take part in detoxification mechanism.

In this study the soil of Haringhata contains 7.3mg/kg of arsenic. This reveals that the soil contain high

amount of arsenic. The strain can tolerate 1000 mg/L of arsenite solution and 500 mg/L of arsenate solution.

Under reducing condition arsenite can be the predominant arsenic species and generally less retained by the soil

colloids [36]. As the flooded soil like rice field has the same condition so it can be assume that the strains isolated from the study field can tolerate more arsenite than arsenate. It can also tolerate other toxic metals like

mercury (300 mg/L) and lead (300 mg/L). These results indicate that the strain has developed some mechanism

against the toxic effect of the metal. The strain not only binds the metal in the outer membrane but also it intake

the metal and transforms its state. Although the uptake of metals impede to a certain concentration. S1 strain can

tolerate 1000 mg/L of arsenite solution but after 500 mg/L its growth ceases drastically and toxic effects are

prominent. As the protein concentration of the strain decreased at 500 mg/L. As arsenite binds with the

sulfhydryl groups of protein and disrupts its function. Thus in this study the strain can tolerate up to 500mg/L of

arsenite. The strain can also accumulate 50% of total arsenic from arsenic containing media. The accumulation

capacity decreased first then again increased after 72 hours of incubation. This result supports the results of

transformation capacity with incubation time. In that case also first the transformation capacity decreased after

48 hours then again increased after 72 hours.

S1 strain can oxidize arsenite to arsenate. As the strain can also showed high growth rate without arsenic and with carbon source this indicates that the strain is not chemolithoautotroph. Here the arsenic

transformation only relates with detoxification mechanism. The detoxification mechanism occurs under aerobic

condition. When quantitatively assessed the strain can transform 90% of arsenite to arsenate. As in the same

process Alcaligenes faecalis, reported arsenite oxidizer, was assessed which can transforms 80% of arsenite to

arsenate. When the transformation capacity was assessed against time it showed that at 24 hours of incubation

the transformation rate is highest which decreased at 48 hours and again increased at 72 hours. This result

indicates that the transformation rate is not same and it depends on some other condition. Oxidation of arsenite

is done by a periplasmic enzyme arsenite reductase [19]. Thus the uptake of arsenite followed by production of

arsenite oxidase and release of arsenate from the cell is not same at all incubation time. But it is clear from this

Bacillus licheniformis ATCC 14580 complete genome

Geobacillus sp. WCH70 complete genome

Thermoanaerobacter brockii subsp. finnii Ako-1 complete genome

Brevibacillus brevis NBRC 100599 DNA complete genome

Carnobacterium maltaromaticum LMA28 complete genome

Bacillus coagulans 36D1 complete genome

S1

gi|226092535|dbj|AP008955.1|:5791035-5791076 Brevibacillus brevis NBRC 100599 DNA complete genome

Oceanobacillus iheyensis HTE831 DNA complete genome

0.1235

0.0687

0.0836

0.0741

0.4604

0.0893

0.0436

0.1480

0.0001

0.0000

0.2670

0.4164

0.4809

0.2417

0.0000

0.0649

Biotransformation and bioaccumulation of arsenic by Brevibacillus brevis isolated from arsenic

www.iosrjournals.org 9 | Page

study that the transform of arsenite through this enzyme creates a potential detoxification process which allows

the strain to tolerate higher level of arsenite .Thus it can’t resist higher level of arsenate.

Till now several arsenite oxidizing bacteria has been reported. Physiologically diverse some are heterotrophic arsenite oxidizers and some are chemolithoautotrophic arsenite oxidizers. The mechanism behind

the detoxification system was identified using the chromosome and plasmid encoded ars operon [23]. The two

most common types of these operons contain either five (arsRDABC) or three (arsRBC) genes [25,13].All these

reported strains can tolerate high amount of arsenite and can transform it to arsenite. Thus the results of this

study were supported by other previous reported reports.

The strain in this study was revealed as from Bacillus genus. Previously many arsenic resistant bacteria

were reported from Bacillus genus. Bacillus and Pseudomonas are two widely known groups for arsenic

resistant bacteria [25]. Various studies were carried out to isolate arsenic resistant bacteria from estuary [37],

groundwater [19],coastal sea water [25],waste water [38].Till now all the studies indicates that arsenic resistance

and also transforming bacteria are widely distributed and phylogenetically diverse [19]. But in this study the

closely relatives species of this strains are not reported. In this study the strain is concerned with only the detoxification mechanism. This is the basis of

bioremediation system as arsenite is more toxic and arsenate can immobilized into strong adsorbents. With the

help of this strain we can build a remediation strategy. But further study is required for the genomic structure

behind the detoxification mechanism. As this bacterium is an indigenous one and isolated from the most

contaminated soil of one of the most contaminated area (Nadia) of West Bengal. Thus this strain can light up the

microbial ecology of arsenic in this area. Like S1 strain can oxidize the arsenite into arsenate and immobilized it

in any strong adsorbents but anoxic environment again activates the dissimilatory arsenate reducing prokaryotes

thus again arsenate can be reduced to arsenite and solubilise into water. Thus any remediation strategy with

arsenite oxidizing bacteria needs strong aerobic environment as microbe arsenic interaction depends on a

number of soil physical characteristics.

V. Conclusion: Many theories have been postulated regarding release of arsenic in ground water .But arsenic pollution

still threatening the Bengal delta plain. The role of microbes in arsenic ecology is also being studied since these

decades. In context with this our attempt was to isolate some arsenic resistant bacteria from crop field as crop

field are the most contaminated sites in Bengal. The isolated strain was found from Bacillus genus. It is well

adapted to arsenite and arsenate environment. The strain can also transform arsenite to less toxic

arsenate .Further information will be needed to characterize its genotypic character and presence of arsenic resistant gene. This information is useful to prepare remediation strategies with indigenous microbial

communities from contaminated sites.

Acknowledgements:

This investigation is funded by the grants from Purse Programme of DST, Govt. of India. Authors are

grateful to Department of Environmental Science, University of Kalyani for providing laboratory and other

facilities.

References: [1] H Brammer., Threat of Arsenic to Agriculture in India, Bangladesh and Nepal, Economic and Political Week l. 43(47),2008, 79-84.

[2] P. Ravenscroft, W.G. Burgess, KM Ahmed, M Burren, J.Perrin. Arsenic in groundwater of the Bengal Basin, Bangladesh:

distribution, field relations and hydrogeological setting. Hydrogeology J, 13, 2009, 727–51.

[3] W. P.Inskeep, T. R. McDermott and S. Fendorf, Arsenic(V)/(III) cycling in soils and natural waters: chemical and microbiological

processes, Environmental chemistry of arsenic. Marcel Dekker, Inc., New York, N.Y. 2002, 183-215

[4] A. Smith, P. Lopipero, M. Bates, C. Steinmaus, Arsenic epidemiology and drinking water standards. Science. 296, 2002, 2145–2146

[5] A.H. Ahmann, L.R. Krumholz, H.F. Hemond, D.R Lovley, and F.M.M Morel, Microbial mobilization of arsenic from sediments of

the Aberjona watershed. Environ Sci Technol 31, 1997, 2923-2930

[6] J. F Stolz, and P. Basu, Evolution of nitrate reductase: Molecular and structural variations on a common function, Chem Bio Chem,

3, 2002, 198 - 206.

[7] R. S Oremland, J. F Stolz, D. J. Ellis, Microbial transformation of element:arsenic, Int. J.Syst. Bacteriol. 49,2002, 305-308.

[8] J.P Maity., S. Kar, J.H. Liu, J. S. Jean, C.Y. Chen, J. Bundschuh, S. C. Santra and C. C. Liu, The potential for reductive

mobilization of arsenic [As(V) to As(III)] by OSBH2(Pseudomonas stutzeri) and OSBH5 (Bacillus cereus) in an oil contaminated

site. Journal of Environmental Science and Health part a, 46:11, 2011, 1239-1246.

[10] T. M Salmassi, K Venkateswaren, M, Satmomi, KH. Nealson, D.K Newman, J.G Hering, Oxidation of arsenite by Agrobacterium

albertimagni, AOL15, sp. Nov., isolated from Hot Creek, California. Geomicrobiology Journal 19, 2002, 53 - 66.

[11] T. M Gihring, G. K Druschel, R. B McCleskey, R. J Hamers. & J. F Banfield, Rapid arsenite oxidation by Thermus aquaticus and

Thermus thermophilus: field and laboratory investigations. Environ Sci Technol 35, 2001, 3857–3862.

[12] J.R Lloyd, D.A. Klessa., D.L Parry, P Buck., N.L Brown, Stimulation of microbial sulphate reduction in a constructed wetland:

microbiological and geochemical analysis. Water Res. 38, 2004, 1822–1830

[13] C. Lin, G. Liu, C. Rensing and G. Wang, Molecular Investigation of Arsenic Transforming Bacteria. BMC Microbiology,

10.1186,2009, 1471-2180

Biotransformation and bioaccumulation of arsenic by Brevibacillus brevis isolated from arsenic

www.iosrjournals.org 10 | Page

[14] K. Duquesne, A. Lieutaud, J. Ratouchniak, D. Muller, M-C Lett, V Bonnefoy. Arsenic oxidation by a chemoautotrophic moderately

acidophilic Thiomonas sp.: from the strain isolation to the gene study. Environ. Microbiol. 10(1), 2008, 228-237.

[15] S.K Acharya, S. Lahiri, B.C. Kaymahashay, A. Bhowmic .Arsenic toxicity in ground water in parts of Bengal Basin in India and

Bangladesh: role of quaternary stratigraphy and Holocene sea level fluctuation. Environ Geol 39(10), 2000, 1127–1137

[16] D Chakraborti, B. Das, M. M Rahman, U. K Chowdhury, B. Biswas, A. B Goswami, B. Nyak, A Pal., M. K Sengupta, S. Ahmed, A

Hossain, G Basu, T. Roychowdhury, D.Das. Status of Groundwater arsenic contamination in the state of West Bengal, India: A 20-

year study report. Molecular Nutrition and Food Research, 53(5), 2009, 542-551.

[17] M. J Abedin., S. Malcolm., A. Andy, J. Cotter-Howells, Arsenic Accumulation and Metabolism in Rice (Oryza sativa), Environ. Sci.

Technol., 36, 2002, 962 -968.

[18] P.L Smedley,. and D.G Kinniburgh , A review of the source, behaviour and distribution of arsenic in natural waters.Appl Geochem

17 ,2002,517-568.

[19] L. Vivian Hsiu-Chuan, C. Yu-Ju, S. Yu-Chen, H. Sung-Yun, W. Chia-Cheng, L. Chen-Wuing, L. Chung-Min, S. Wei-Chiang,

C.Fi-John. Arsenite-oxidizing and arsenate-reducing bacteria associated with arsenic-rich groundwater in Taiwan, Journal of

hazardous material 2011doi:10.1016/j.jhazmat.2011.09.099,

[20] K. Krumova., M. Nikolosova., V. Groudeva, Isolation and identification of arsenic-Transformating Bacteria from arsenic

contaminated sites in Bulgaria, Biotechnol & Biotechnol, 2001, 721-728.

[21] K. Suresh, S. R Prabagaran, S. Sengupta, & S. Shivaji, Bacillus indicus sp. nov., an arsenic-resistant bacterium isolated from an

aquifer in West Bengal, India. Int J Syst Evol Microbiol 54, 2004, 1369–1375.

[22] S Shivaji, N. S Rao, L. Saisree, G. S. N Reddy., G. Seshu Kumar, &, P. M Bhargava.. Isolates of Arthrobacter from the soils of

Schirmacher Oasis, Antarctica. Polar Biol 10, 1989, 225–229.

[23] S Silver. And L.T Phung A bacterial view of the periodic table:genes and proteins for toxic inorganic ions.J Ind Microbiol

Biotechnol 32,2005, 587-605.

[24] R. Chowdhury, A. K. Sen, P. Karak, R. Chatterjee, A. K. Giri, K. Chaudury, Isolation and characterization of an arsenic-resistant

bacterium from a bore-well in West Bengal, India Annals of Microbiology, 59 (2) ,2009 , 253-258.

[25] J.S Chang, Y.H Kim, K.W Kim., The ars genotype characterization of arsenic-resistant bacteria from arsenic-contaminated gold–

silver mines in the Republic of Korea. Appl. Microbiol. Biotechnol. 80, 2008, 155–165.

[26] S. Humayun. ,B. Bano , Depth distribution of microbial diversity in Mono Lake, A meromictic soda lake in California N. Appl.

Environ. Microbiol 69,2008, 1030-1042.

[27] A. Walkley and I. A Black, An examination of the degtiareff method for determining soil organic matter and a proposed

modification of the chromic acid titration method, Soil Science, 37,1934, 29-38.

[28] APHA (American Public Health Association), Standard methods for examination of water and waste water, 18th edition, 1992,

American Public Health Association, Washington DC.

[29] P. Bhattacharya, A.C. Samal, J. Majumdar, & S.C. Santra, Accumulation of arsenic and its distribution in rice plant (oryza sativa L.)

in gangetic west Bengal, India, .Paddy and Water Environment, 8(1), 2010, 63-70.

[30] M. M Hossain, M. A Sattar, M. A. Hashem and M. R Islam, Arsenic status at different depths in some soil of Bangladesh, J.

Biological Sci., 1, 2003, 1116-1119

[31] R.N Krieg, Bergey’s Manual of Systematic Bacteriology. Williams & Wilkins, Baltimore, 1984, 837-942.

[32] H. Ohba and N. Owa, Isolation and Identification of Sulfur- oxidizing Bacteria from the Buried Layer Containing Reduced Sulfur

Compounds of a Paddy Field on Sado Island in Niigata Prefecture, Bull. Facul. Agric. Niigata Univ, 58(1), 2005, 55-61.

[33]. M. M. Rahman, M. K. Sengupta, S. Ahamed, U. K. Chowdhury, D. Lodh, A. Hossain, B. Das, N. Roy,. K. C. Saha, S.K. Palit, & D.

Chakraborti, Arsenic contamination of groundwater and its health impact on residents in a village in West Bengal, India, Bulletin of

the World Health Organization, 2005, 83 (1).

[34] M.Sadiq, Arsenic chemistry in soils: an overview of thermodynamic predictions and field observations. Water, Air and Soil

Pollution 93, 1997,117–136.

[35] R. Turpeinen, .Interactions between metals, microbes & plants-bioremediation of arsenic & lead contaminated soil. Academic

dissertation in Env Ecology.2003.

[36] S.P.Bachate, L Cavalca, V Andreoni ,Arsenic-resistant bacteria isolated from agricultural soils of Bangladesh and characterization

of arsenate-reducing strains. Journal of Applied Microbiology 107, 2009, 145-156.

[37] C.R. Jackson, K.G. Harrison and S.L. Dugas,. Enumeration and characterization of culturable arsenate resistant bacteria in a large

estuary, Systematic Applied Microbiol., 28,2005, 727-734.

[38] Abdul Rehman, S. Awais Butt and Shahida Hasnain, Isolation and characterization of arsenite oxidizing Pseudomonas lubricans

and its potential use in bioremediation of wastewater, African Journal of Biotechnology Vol. 9(10), 2010 , pp. 1493-1498.