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Antiproliferative Effects by Let-7 Repression of High-Mobility Group A2 in Uterine Leiomyoma
Transcript of Antiproliferative Effects by Let-7 Repression of High-Mobility Group A2 in Uterine Leiomyoma
Antiproliferative Effects by Let-7 Repression ofHigh-Mobility Group A2 in Uterine Leiomyoma
Yi Peng, Jordan Laser, Guizhi Shi, Khush Mittal, Jonathan Melamed,Peng Lee, and Jian-Jun Wei
Department of Pathology, New York University School of Medicine, New York, New York
AbstractHigh-mobility group A2 (HMGA2) is commonly
overexpressed in large leiomyomas. HMGA2 is an
important regulator of cell growth, differentiation,
apoptosis, and transformation. As a predicted target of
Let-7 microRNAs (Let-7s), HMGA2 can be repressed by
Let-7s in vitro . MicroRNA profiling analysis revealed
that Let-7s were significantly dysregulated in uterine
leiomyomas: high in small leiomyomas and lower in
large leiomyomas. To evaluate whether Let-7 repression
of HMGA2 plays a major role in leiomyomas, we analyzed
the molecular relationship of HMGA2 and Let-7s,
both in vitro and in vivo. We first characterized that
exogenous Let-7 microRNAs could directly repress
the dominant transcript of HMGA2, HMGA2a . This
repression was also identified for two cryptic HMGA2
transcripts in primary leiomyoma cultures. Second, we
found that the endogenous Let-7s were biologically
active and played a major role in the regulation of
HMGA2. Then, we illustrated that Let-7 repression
of HMGA2 inhibited cellular proliferation. Finally,
we examined the expression levels of Let-7c and HMGA2
in a large cohort of leiomyomas (n = 120), and we
found high levels of Let-7 and low levels of HMGA2 in
small leiomyomas, and low levels of Let-7 and high
levels of HMGA2 in large leiomyomas. Our findings
suggest that the Let-7 –mediated repression of HMGA2
mechanism can be an important molecular event in
leiomyoma growth. (Mol Cancer Res 2008;6(4):663–73)
IntroductionUterine leiomyomas are a major public health problem,
represented by a high incidence (1), a high rate of hysterec-
tomies for symptomatic disease (2), and a high medical cost
(3, 4). About 20% of patients with leiomyomas experience
clinical symptoms and seek medical treatment. The severity of
symptoms is often associated with large leiomyomas.
Overexpression of high-mobility group A2 (HMGA2) is
very common in uterine leiomyomas and it is induced by
chromosomal changes involving 12q13-15 (5, 6). Most of
the 12q15 breakpoints in leiomyomas are located 5¶ to the
HMGA2 locus (7, 8), giving rise to a nontruncated HMGA2
overexpression, and are strongly associated with large leio-
myomas (9, 10). Leiomyomas with and without HMGA2
expression have distinctly different gene expression profiles
(11, 12), indicative of the unique molecular role of HMGA2 in
the tumorigenesis of uterine leiomyomas.
HMGA2, a high-mobility-group AT-hook (HMGA) protein,
is a non-histone DNA binding factor. It has three AT-hook
DNA binding domains through which HMGA2 binds to AT-
rich sequences in the minor groove of the DNA helix. HMGA2
is expressed in embryonic tissue but not in most normal adult
tissues (13, 14). As an important regulator of cell growth,
differentiation, apoptosis, and transformation (15), HMGA2
interacts with many different transcription factors and influen-
ces numerous gene expression patterns (15).
Overexpression of HMGA2 in human uterine leiomyomas
is mainly contributed by its dominant transcript HMGA2a by
Northern blot analysis (14). In addition to the major transcript
HMGA2a , several ‘‘cryptic’’ HMGA2 (HMGA2b-HMGA2g)
isoforms can be transcribed by alternative splicing from the large
intron 3 (16, 17). These cryptic transcripts can only be detected
in very low levels in fetal cells and some cultured cells (16).
Let-7 microRNAs (Let-7s) are one of the first microRNAs
identified in Caenorhabditis elegans and is highly conserved in
C. elegans, Drosophila , zebrafish, and humans (18-20). Let-7s
regulate target genes through either posttranscriptional repres-
sion (mRNA; refs. 21-23) or translational repression (protein;
refs. 22, 23). In normal embryonic development, temporal
up-regulation of Let-7s is required for terminal differentiation.
In humans, various Let-7 genes have been reported to map to
regions deleted in many human cancers (24), such as lung
cancer (25), in which the loss of Let-7 expression results in the
up-regulation of RAS oncogenes (26). There are several
predicted Let-7 complementary sites (LCS) at the 3¶ untrans-lation region (3¶-UTR) of human HMGA2 . Recently, several
studies have illustrated that Let-7s can regulate HMGA2
expression in squamous cell carcinoma (27) and in vitro
systems (28, 29).
In our microRNA profiling study, we found that several
Let-7 members were significantly dysregulated in uterine
leiomyomas: high levels in small leiomyomas and low in large
ones (30). To evaluate the biological role of Let-7s in the
regulation of leiomyoma growth, we analyzed the relationship
Received 8/7/07; revised 11/27/07; accepted 11/30/07.The costs of publication of this article were defrayed in part by the payment ofpage charges. This article must therefore be hereby marked advertisement inaccordance with 18 U.S.C. Section 1734 solely to indicate this fact.Note: This work was presented in part at the 96th Annual Meeting of United Statesand Canadian Academy of Pathology, March 24–30, 2007, San Diego, CA.Y. Peng and J. Laser contributed equally to this work.Requests for reprints: Jian-Jun Wei, Department of Pathology, New YorkUniversity School of Medicine, 462 First Avenue, NB4W1, New York, NY10016. Phone: 212-562-7893; Fax: 212-263-7573. E-mail: [email protected],or Peng Lee, Department of Pathology, New York University School of Medicine.E-mail: [email protected] D 2008 American Association for Cancer Research.doi:10.1158/1541-7786.MCR-07-0370
Mol Cancer Res 2008;6(4). April 2008 663
between Let-7s and HMGA2 and their roles in cellular
proliferation, both in vitro and in vivo . Our data showed that
Let-7s could be a key negative regulator for HMGA2
expression and cellular proliferation. Our findings provide
additional support that repression of HMGA2a by Let-7s is a
specific molecular mechanism responsible for leiomyoma
growth.
ResultsLet-7 microRNAs Regulate the Dominant TranscriptHMGA2a and Two Additional Cryptic Transcripts inLeiomyomas
Several recent studies (27, 29), including ours (30), illustrate
that Let-7 microRNAs can directly repress HMGA2 expression
at the translational level. Lee and Dutta (28) further
characterized that the repression of HMGA2 was mostly
through destabilization of HMGA2 mRNA in HeLa cells. We
previously found that transfection of exogenous Let-7c in
primary leiomyoma culture cells can repress HMGA2 transla-
tion (30) with minimal effect on HMGA2 mRNA levels
(Fig. 1A). Provided that the presence of Let-7 LCS at the
3¶-UTR of HMGA2 is required for Let-7 activity, several
potential mechanisms can explain the overexpression of
HMGA2 in uterine leiomyomas: (a) loss or reduction of Let-
7 expression; (b) the truncated transcripts of HMGA2 with a
partial or complete loss of Let-7 LCS, secondary to
chromosomal 12q13-15 changes (7, 31); and (c) expression
of cryptic HMGA2 isoforms (HMGA2b-HMGA2g ; refs. 17, 32)
that may lack Let-7 LCS.
To exclude leiomyomas with truncated HMGA2 transcripts,
which may have partial or complete loss of the HMGA2
3¶-UTR, we carried out reverse transcription-PCR (RT-PCR)
with primers from exon 3 and exon 5 (see Table 1). These primer
pairs were chosen because they cover almost the entire HMGA2a
3¶-UTR. We found no loss of the Let-7 LCS in our study.
Little is known about the expression of HMGA2 isoforms in
uterine leiomyomas. Studies showed that HMGA2 isoforms
might be induced in tissue culture conditions (16, 17). To test
whether HMGA2 isoforms were differentially expressed in
native leiomyomas versus culture conditions, we examined six
HMGA2 mRNA transcripts (primers for each isoforms were
listed in Table 1). We found that noncultured leiomyomas
contained a high abundance of HMGA2a mRNA and a low
abundance of HMGA2b and HMGA2c isoforms. Minimal or no
expression of transcripts HMGA2d, HMGA2e , and HMGA2f
was identified (Fig. 1B). In examination of an additional 10
HMGA2-positive leiomyomas, similar HMGA2 expression
patterns were observed (data not shown).
We then examined the expression of HMGA2 isoforms in
three leiomyomas under culture conditions. We found that all
HMGA2 mRNA isoforms except for transcript HMGA2e were
detectable by RT-PCR with 32 amplification cycles (Fig. 1B).
The full-length HMGA2 mRNAs have only been published
FIGURE 1. Transcriptional regulation ofHMGA2 and its alternatively spliced transcriptsby Let-7 in culture and nonculture leiomyomacells. A. Photonegative images illustrate minimalchange in HMGA2 mRNA levels (common domainfrom exon 1 and exon 3; see Table 1) in primaryculture leiomyoma cells in the absence (lanes 1-3)or presence (lanes 4 and 5) of exogenous Let-7ctreatment. Mature Let-7c and HMGA2 in each cellsample were examined by RT-PCR and therelative abundance of each cDNA product wasscored under each band. B. Differential expres-sion of HMGA2a and cryptic transcripts (alterna-tively spliced transcripts of HMGA2 ; see Table 1)in native and cultured leiomyoma cells (ULM ).C. Photonegative images illustrated posttranscrip-tional regulation of the endogenous HMGA2a andcryptic transcripts by transient transfection ofmature let-7c mimic in primary culture leiomyomacells. D. Posttranscriptional regulation of theendogenous HMGA2a mRNA by transient trans-fection of control RNA, mature let-7c mimic, andlet-7 inhibitor in two additional cultured tumor cells.Actin and U6 were examined as RNA loadingcontrols for mRNA and microRNA.
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for isoforms HMGA2a and HMGA2b (NM_003483 and
NM_003484). Sequence analysis shows that HMGA2a , but
not HMGA2b , contains the Let-7 LCS. To determine which of
the HMGA2 transcripts can be destabilized by Let-7s, we
examined the levels of the HMGA2 isoforms by RT-PCR in
cultured leiomyoma cells following transient transfection of
Let-7c . Under these culture conditions, a reduction of HMGA2
transcripts HMGA2a, HMGA2c , and HMGA2f was observed,
and the reduction of HMGA2c and HMGA2f seemed to be dose
dependent. No change of transcripts HMGA2b and HMGA2d
was seen (Fig. 1C). These findings showed that not all of the
HMGA2 isoform mRNAs can be destabilized by exogenous
Let-7s.
In another two independent experiments, let-7c repression of
HMGA2a mRNA was reproducible (Fig. 1D). However, the
levels of HMGA2a mRNA reduction by exogenous Let-7c were
not as efficient as we saw in HMGA2a stable cell lines (see
below).
Let-7 microRNAs Are Major Players in the Regulation ofHMGA2 Expression in Leiomyomas
By computer searches (TargetScan and miRanda; refs. 33,
34), it has been shown that, in addition to Let-7s, HMGA2 can
be potentially regulated by more than 30 other microRNAs.
Among these 30 microRNAs, only three of them were found
to be significantly overexpressed in leiomyomas (miR-30a,
miR-34, and miR-24; ref. 30). These microRNAs (miR-30a,
miR-34, and miR-24) were shown to have a much lower
binding score to HMGA2 than Let-7s.
To evaluate the role of endogenous Let-7 microRNAs in the
regulation of HMGA2a expression, we prepared the pGL3
constructs with the luciferase (LCF) reporter gene under control
of the HMGA2a 3¶-UTR (Fig. 2A). For this assay, we used
HeLa cells because (a) HeLa cells have a moderate level of
endogenous Let-7 expression (35), and (b) HeLa cells have
minimal HMGA2 expression by RT-PCR and Western blot
analysis (data not shown). We found that in cells transfected
with LCF + HMGA2a 3¶-UTR, there was 5.2-fold reduction of
luciferase expression in comparison with baseline control (LCF
only; Fig. 2B). To test whether repression of luciferase
expression with HMGA2a 3¶-UTR was mainly contributed by
Let-7 , cotransfection of Let-7 inhibitor at various concentrations
was done and the luciferase expression was measured. As
illustrated in Fig. 2B, the luciferase expression was rescued by
anti–Let-7 treatment, and the level of luciferase expression was
dose dependent. Of note is the fact that the level of luciferase
activity did not return to baseline (Fig. 2B). This suggests that
additional minor regulatory mechanisms for HMGA2 may exist
in HeLa cells, such as long 3¶-UTR reducing translation
efficiency and other microRNA or non-microRNA regulators.
To determine the relationship of Let-7c and HMGA2 in vivo ,
we selected five HMGA2 (mRNA) positive leiomyomas of
varying tumor sizes (1-10 cm; T1.0, T2.0, T5.0, T7.0, and
T10.0 cm). The endogenous Let-7c and HMGA2 proteins were
semiquantitatively evaluated in each tumor and the expected
inverse relationship was identified (Fig. 2C). Namely, large
leiomyomas contained low levels of endogenous Let-7c and
high levels of HMGA2, and small leiomyomas contained high
levels of Let-7c and low levels of HMGA2 (Fig. 2C).
After establishing primary cultures from these five leiomyo-
mas, transient transfections of control (LCF only), test 1 (LCF +
HMGA2a 3¶-UTR), and test 2 (LCF + HMGA2a 3¶-UTR and
Let-7c inhibitor) were done in each tumor in triplicate. The
luciferase expression was measured after 48 hours of
transfection. The reduction in luciferase expression was
significantly greater in small leiomyomas (high Let-7c levels)
than in larger tumors (low Let-7c levels; 3.3- and 2.6-fold
reduction in 1.0- and 2.0-cm tumors versus 1.2- to 1.5-fold in
the 5-, 7-, and 10-cm tumors; r = 0.86; Fig. 2D). Similar to
previous cell line experiments, cotransfection with Let-7
inhibitor (40 pmol) rescued the luciferase activity up to 80%
of the original levels (Fig. 2D).
The findings indicate that (a) the level of HMGA2a
repression is correlated with the level of endogenous Let-7
microRNA; (b) repression of HMGA2a in leiomyomas was
largely contributed by Let-7 microRNAs; and (c) there was an
inverse association of endogenous Let-7c and HMGA2a protein
in native leiomyomas.
Table 1. RT-PCR Primers for HMGA2
Primers Exon (nt) Primer Direction Sequence (5¶-3¶) PCR Products (bp)
HMGA2f Exon 1 (630) F TCCGGTGTTGATGGTGGCAGHMGA2r Exon 3 (1,042) R CTTGGCCGTTTTTCTCCAGTG 411HMGA2a3f Exon 1 (811) F ATGAGCGCACGCGGTGAGGGCHMGA2a4f Exon 5 (1,250) F GAGGAAACTGAAGAGACATCCHMGA2a5r Exon 5 (4,089) R GTTAGAAGACACTCAAAGGAACAGHMGA2a1 Exon 4 (1,061) F TGGTTGCTAATGAAGAGCCCGHMGA2a2 Exon 5 (1,400) R CCAGATGAAAGTGGAAAGACC 340HMGA2b1 Exon 3 (1,021) F CACTGGAGAAAAACGGCCAAGHMGA2b2 Exon 3.6 (1,322) R ACTACATCTTGGGATGCAGACT 302HMGA2c1* Exon 1 (839) F CAGCCGTCCACTTCAGCCCAGGGAHMGA2c2* Exon 3.1 R CAAATTTCAATTGGCAGGACTGGCT 404HMGA2d1* Exon 1 (713) F CCGGCGTCCCCAGCCCTATCACCTHMGA2d2* Exon 3.2 R CAGTTCCGGGATCAGCAGGCTTCC 409HMGA2e1* Exon 1 (839) F CAGCCGTCCACTTCAGCCCAGGGAHMGA2e2* Exon 3.3 R CATGGTGAAACCCCGTCTCTACTA 509HMGA2f1* Exon 1 (839) F CAGCCGTCCACTTCAGCCCAGGGAHMGA2f2* Exon 3.4 R GATGTTTTCTTCTTGGAGCTGGTTC 509
Abbreviations: F, forward primer; R, reverse primer.*Hauke et al. (17).
Repression of HMGA2 by Let-7 in Leiomyomas
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665
Let-7 Inhibits Tumor Growth through Repression ofHMGA2a
Studies showed that overexpression of HMGA2 is strongly
associated with large leiomyomas (9, 10). It is important to
determine whether the regulatory mechanism of Let-7 repres-
sion of HMGA2 affects tumor growth. There were a couple of
limitations in the analysis of the Let-7 ::HMGA2 regulation in
primary leiomyoma cell cultures: First, primary cultures
showed a slow growth rate, and second, the culture induced
cryptic HMGA2 transcripts that may not respond to Let-7 due
to lack of Let-7 LCS in some transcripts (Fig. 1C). We therefore
chose PC3 and LNCaP cell lines for our proliferation assays.
The rationale for using these two cell lines is that, first, these
prostate cell lines have minimal or no endogenous HMGA2
and let-7 expressions (36); particularly, there are no culture-
induced HMGA2a and other cryptic transcripts commonly
seen in leiomyoma primary cultures. Second, the constructions
of HMGA2 with and without 3¶-UTR in these cell lines using
retroviral pBabe vectors (Fig. 3A) will allow us to further
characterize the specificity for let-7 repression of HMGA2a in
the presence and absence of let-7 LCS. Stable overexpression of
HMGA2a in these cell lines was shown by both RT-PCR and
Western blot (Fig. 3B).
Confirmation that the Let-7c ::HMGA2 regulatory mecha-
nism is preserved in these transduced cells was provided by
transfection of exogenous Let-7c and Let-7c inhibitor. Of note
was that HMGA2a expression could be completely repressed in
both cell lines (Fig. 3C and D).
To evaluate the role of the Let-7c ::HMGA2 regulatory
mechanism in cellular proliferation, we determined the
proliferation rate of PC3 and LNCaP cell lines by controlling
HMGA2a expression. In PC3 and LNCaP cells with pBabe
only (control cell lines), transfection of exogenous Let-7c
resulted in up to 12% reduction in the proliferation rate after
24 to 48 hours (Fig. 3E and F, left). In PC3 and LNCaP cell
lines with stable overexpression of HMGA2a without 3¶-UTR(lack of Let-7 LCS), transfection of exogenous Let-7c had
similar reductions of proliferation rate as pBabe control
(Fig. 3E and F, middle), whereas in the cell lines with stable
overexpression of HMGA2a with 3¶-UTR (presence of Let-7
LCS), transfection of exogenous Let-7c (Fig. 3C and D)
resulted in up to a 35% reduction in the proliferation rate
(Fig. 3E and F, right). There were minimal differences of tumor
cell growth rates between control and anti–Let-7 groups. This
could be explained by very low levels or no endogenous Let-7
expression in these cell lines.
To test whether Let-7 microRNAs affect the proliferation
in leiomyomas, we compared the correlation between
endogenous Let-7 microRNAs and the cell proliferation
index in leiomyomas. We selected 36 leiomyomas, in which
the relative abundance of Let-7 microRNAs was scored
based on a microRNA gene microarray analysis (30). By
FIGURE 2. Repression of luciferase expression under HMGA2a 3¶-UTR control by endogenous Let-7 microRNAs in HeLa cells and five leiomyomas.A. Sketch diagram illustrates the luciferase (LCF) reporter gene constructs with and without HMGA2a 3¶-UTR in pGL3.B. Luciferase expression (y axis ) wasmeasured in LCF vehicle alone (empty box ) and LCF + HMGA2a 3¶-UTR (shadowed boxes ) by administration of five different doses of Let-7 inhibitor(0-60 pmol). Fold changes were indicated on top of the bars. ***, P < 0.001. C. Expression analysis of endogenous mature Let-7c (RT-PCR) and HMGA2protein (Western blot) in five HMGA2 mRNA positive leiomyomas corresponding to tumor sizes of 1 cm (T1), 2 cm (T2), 5 cm (T5), 7 cm (T7), and 10 cm (T10).U6 and extracellular signal – regulated kinase (ERK) were loading controls for microRNA and total protein in each sample. D. Luciferase expression (y axis )analysis in these five tumors (T1.0-T10.0) and normal myometrium (MM) in triplicate following transfection with LCF vehicle only (luc+ ), LCF + HMGA2a 3¶-UTR (luc+/3-UTR ), and LCF + HMGA2a 3¶-UTR with Let-7 inhibitor (anti –Let-7 ). Bars, SE. Control LCF expression (vehicle alone) was set at 100 in y axis .
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Mol Cancer Res 2008;6(4). April 2008
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determining the proliferation rate using immunostains for
Ki-67 (a proliferation marker), we found that there was a
weakly negative correlation between Let-7 microRNAs (Let-
7a-1, Let-7b, Let-7c, Let-7d, Let-7e, Let-7f-1 , and Let-7f-2)
and Ki-67 (r = �0.15 to �0.33; data not shown). By
comparing the Ki-67 index (by immunohistochemistry) and
Let-7c expression (by in situ hybridization) in a large
cohort of leiomyomas, an inverse association was observed
(Table 2). These findings suggest that the Let-7c ::HMGA2
regulatory mechanism may play a role in governing
proliferation in leiomyomas.
Correlation of HMGA2 and Let-7 Expression in a LargeLeiomyoma Cohort
Protein levels of HMGA2 were determined via immunohis-
tochemistry. Overall, 45% of leiomyomas had recognizable
nuclear immunoreactivities for HMGA2 (Fig. 4A). Among
them, 37.8% (68 of 180) of leiomyomas had an immunointen-
sity score of 1+ and above. These findings are consistent with
previously published data (37).
The 180 leiomyomas were arbitrarily divided into four
groups, depending on the size of the tumor: 1-3 cm (n = 47),
4-6 cm (n = 53), 7-9 cm (n = 50), and z10 cm (n = 30). The
FIGURE 3. Antiprolifer-ation analysis of Let-7c inPC3 and LNCaP cell lines withstable overexpression ofHMGA2a . A. Sketch diagramillustrates HMGA2a con-structs with and without Let-7LCS in retrovirus pBabe. B.Established PC3 (left ) andLNCaP (right ) cell lines withstable overexpression ofHMGA2a . C and D. Repres-sion of HMGA2a by exoge-nous Let-7c in HMGA2 + PC3(C) and HMGA2 + LNCaP (D)cells with Let-7 LCS. Sampleswere loaded from left to rightas nontreated, Block-iT, Let-7c (40 pmol), Let-7c (40 pmol)+ Let-7c inhibitor (40 pmol),and Let-7c inhibitor (40 pmol)only. The levels of Let-7c andHMGA2 protein were deter-m ined by RT-PCR andWestern blot analysis. U6and actin were used as RNAloading controls. E and F.Cell growth curves in PC3(E) and LNCaP (F) cellswith pBabe (PC3+pBabe ;left ), stable overexpression ofHMGA2a without 3 ¶-UTR(PC3+HMGA2-3¶-UTR ; mid-dle ), and stable overexpres-sion of HMGA2a with 3¶-UTR(PC3+HMGA2+3¶-UTR ; right).Cells were treated by controlRNA (dotted lines ), Let-7c(solid lines ), and Let-7 inhibi-tor (dashed lines ) in triplicate.Cell counts (y axis ) werequantitatively measured bycolorimetric WST-1 stain (seeMaterials and Methods) andtime points (x axis ) were at24, 48, 72, and 96 h. Celltypes were listed below thediagrams.
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Mol Cancer Res 2008;6(4). April 2008
667
mean immunointensity and positive rate of HMGA2 in each
group were calculated (Fig. 4B), with the highest immunor-
eactivities for HMGA2 present in the 7-9 cm group (2.45 F0.47) and the lowest in the V3 cm group (1.16 F 0.39;
P < 0.05). The percentage of HMGA2-positive cases was
25.9% (7 of 27) in tumors of V3 cm and 61.1% (11 of 18) in
tumors of z10 cm.
HMGA2 mRNA levels, with respect to tumor size, were
determined by RT-PCR with primers from exons 4 and 5
(Table 1). A total of 60 leiomyomas [30 large (z10 cm) and
30 small (V3 cm)] with matched myometrium were analyzed.
HMGA2a mRNAwas detected in 38% (23 of 60) of tumors with
a similar proportion in both the large and small groups. Minimal
expression of HMGA2a mRNA in myometrial controls was
identified (Fig. 4C). The expression of HMGA2a mRNA varied
greatly and the difference between the large and small groups
was insignificant (P = 0.89; Fig. 4C). These results suggest that
Let-7c regulated HMGA2 expression mostly via inhibition of
translation.
Our previous studies identified that 7 of the 11 Let-7
microRNA family members were significantly overexpressed in
leiomyomas via microRNA microarray analysis (30). Of these
seven, five (Let-7c, Let-7d, Let-7e, Let-7f-1 , and Let-7f-2 ;
Ambion) were statistically significant with respect to tumor
size, where smaller tumors had higher levels (Fig. 5A). To
further evaluate the differential expression of Let-7 microRNAs
in different tumor sizes, we examined the mature Let-7a,
Let-7c , and Let-7f-2 by semiquantitative RT-PCR (mirVana
microRNA PCR, Ambion). With an appropriate U6 control,
small (<3 cm) tumors had higher Let-7 expression than the
large (>10 cm) tumors (Fig. 5B).
Let-7c was the most abundant microRNA in Let-7 family
in leiomyomas (Fig. 5B). To further characterize differential
expression of Let-7c in leiomyomas, we examined Let-7c by
microRNA in situ hybridization (Exiqon) in a total of 120
tumors (Fig. 5C and D). The intensity of Let-7c microRNA
was scored in a semiquantitative method in triplicate tissue
cores from each case. The matched myometrium was used as
an internal control and the net gain or loss of Let-7c was
calculated. Overexpression of Let-7c was observed in this
large cohort. When the levels of Let-7c microRNA were
analyzed with respect to leiomyoma size (V3, 4-6, 7-9, andz10 cm), a reduction of Let-7c was substantial in larger
leiomyomas in comparison with small tumors (Fig. 5D). There
was a 2.6-fold difference of Let-7c net loss between the
smallest and the largest leiomyomas (P < 0.05). These
findings are consistent with our previous global microRNA
profiling analysis.
Table 2. Expression of HMGA2 and Ki-67 (Immunohistochemistry) and Let-7c (Tissue In situ Hybridization) in 180Leiomyomas
Tumor Size (cm) P
1-3 4-6 7-9 z10
Cases (n ) 47 53 50 30HMGA2 1.16 F 0.39 2.11 F 0.43 2.45 F 0.47 2.41 F 0.58 <0.05Ki-67 2.03 F 0.91 2.01 F 0.88 4.53 F 0.85 3.52 F 1.08 <0.05Cases (n ) 22 29 45 24Let-7c 0.56 F 0.11 0.46 F 0.13 0.27 F 0.11 0.23 F 0.13 <0.05
FIGURE 4. Differential expression of HMGA2 with respect to leiomyoma size. A. Photomicrographs illustrated examples of immunoreactivity for HMGA2in leiomyomas (positive) and matched myometrium (negative). B. Columns, mean immunoreactivities for HMGA2 gene products (y axis ) in four groups ofdifferent leiomyoma sizes; bars, SE. Significance of immunoscores (P < 0.05) between tumor sizes of 1-3 and 7-9 cm was shown above the columns. C. Dotplot analysis of HMGA2a mRNA expression in small leiomyomas (V3 cm; middle ), large leiomyomas (z10 cm; right ), and matched myometrium (left ). Eachdot represents the relative amount of cDNA scaled by semiquantitative RT-PCR products (y axis ) by density photometry in each tissue sample. Shorthorizontal bars, mean values in each group.
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DiscussionHMGA2 is normally expressed in embryonic tissue but
not in normal adult tissue. Proper regulation of HMGA2 is
imperative for its biological function in the development of
specific cell types. Previous studies have shown that HMGA2 is
abnormally overexpressed in many benign and malignant
neoplasms, particularly in uterine leiomyomas. Although its
role in tumorigenesis is not fully understood, overexpression of
HMGA2 is found to be associated with large tumor size in
leiomyomas (16, 37), suggesting its role in promoting tumor
growth.
MicroRNAs are important small molecules known to
participate in the fine-tuning of functional gene activity. Because
HMGA2 is one of the major targets of Let-7 microRNAs
(27-30), and large leiomyomas have high levels of HMGA2
(16, 37) and a high Ki-67 index (38), we speculate that dys-
regulation of the Let-7::HMGA2 regulatory mechanism may be
one of key genetic events promoting leiomyoma growth.
Characterization of Let-7 repression of HMGA2 in leiomyomas
can provide a better understanding of HMGA2 function.
The HMGA2 gene consists of five exons and spans >200 kb
with a large intronic sequence (>100 kb) between exons 3
FIGURE 5. Differentialexpressions ofLet-7 microRNAswith respect to leiomyomasize.A. Unsupervised dendro-gram cluster analysis of sevenLet-7 family members (row )in a total of 48 leiomyomas(column ) of small (1-3 cm),intermediate (4-9 cm), andlarge (z10 cm) leiomyomas(the tumor sizes were indicatedin colored bars underneath).The net changes of Let-7microRNAs are marked in red(overexpression), black (nochange), and green (underex-pression). B. Photonegativeimages of Let-7a, Let-7c , andLet-7f-2 by RT-PCR in ran-domly selected eight small(S1-S8) and eight large (L1-L8) leiomyomas. U6 was usedas an RNA loading control. C.Photomicrographs illustratingexamples of Let-7c expressionin myometrium (left) and small(middle ) and large (right ) leio-myomas (ULM ) by microRNAin situ hybridization (details inMaterials and Methods). Inten-sity of the purple color repre-sents the relative amount ofLet-7c expression. D. Semi-quantitative analysis of Let-7cexpression based on the inten-sity of microRNA in situ hybrid-ization signals (seeC). The netchanges of Let-7 expression inleiomyomas were normalizedagainst the matched myome-trium (y axis ). The means ofLet-7c in each of four tumorsize groups are given (x axis ).The fold changes betweenthe smallest leiomyomas andother sizes of leiomyomaswere listed above. *, P < 0.05.
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Mol Cancer Res 2008;6(4). April 2008
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and 4. The major transcript is HMGA2a , a 4.1-kb mRNA from
five exons that translates to a 108-amino-acid HMGA2 protein.
The first exon encodes the first 37 amino acid residues for the
first AT-hook domain. The second and third AT-hook domains
are encoded by the second and third exons, respectively. Exon 4
encodes 12 amino acids to separate the AT-hooks from the
COOH-terminal amino acid domain, encoded by exon 5 (39).
Many cryptic transcripts seem to have unique 3¶ exons along thelarge intron 3. Although the full-length mRNA sequences from
most cryptic transcripts remain undetermined, we illustrate that,
in addition to the dominant transcript,HMGA2a , two other minor
transcripts,HMGA2c andHMGA2f , can be destabilized by Let-7
microRNAs in leiomyomas. Apparently, regulation of HMGA2
transcripts can be complicated by its genetic and transcriptional
mechanisms, depending on whether Let-7 LCS exists.
Several attempts to characterize the molecular regulation of
Let-7 ::HMGA2 pairing in leiomyomas have been conducted in
this study. We characterized that HMGA2 , in natural leiomyo-
mas and stable HMGA2a expression cell lines, can be repressed
by exogenous Let-7 microRNAs. Endogenous Let-7 micro-
RNAs in leiomyoma tumor cells can repress luciferase activity
when HMGA2 3¶-UTR is present. In HMGA2a-positive
leiomyomas, the levels of endogenous Let-7 microRNAs
determine the levels of HMGA2a gene products. Because
HMGA2 overexpression and a loss of Let-7 microRNA
expression are more common in large leiomyomas (Fig. 5),
we proposed that disrupting the pairing between Let-7 and
HMGA2 is an important molecular mechanism in promoting
leiomyoma growth. A supporting factor arises from the inverse
association between Let-7 expression and the Ki-67 index in
leiomyomas (Table 2). Although we do not have a good in vitro
model to show that HMGA2 promotes leiomyoma growth
(due to a slow growth rate of leiomyoma primary culture), the
mitogenic role of HMGA2 was examined in the HMGA2-
positive PC3 and LNCaP cell lines (Fig. 3) and in the NIH 3T3
cell line in xenografts of nude mice (29). The findings from this
study and other recent publications (27-29) strongly suggest
that Let-7 microRNAs are important molecules that regulate
HMGA2 expression and tumor cell growth.
Let-7 microRNAs may regulate 500 to 600 genes (PicTar
and TargetScan). Of the 1,780 significantly dysregulated genes
in leiomyomas (40, 41), 33 are predicted targets of Let-7
microRNAs. Of these, only a few are significantly dysregulated
in leiomyomas and are therefore likely biological targets. In
addition to HMGA2, Let-7 regulation of leiomyoma growth
may also be mediated through other predicted targets. Although
RAS genes have been characterized as Let-7 targets (42), no
evidence of abnormal expression of RAS genes in leiomyomas
has been documented.
Regulation of Let-7 microRNAs is not a well established
phenomenon. In humans, various Let-7 genes have been
reported to map to regions deleted in many human cancers
(24, 25). Therefore, direct genomic alterations could result in a
loss of Let-7 expression. Recently, Kulshreshtha et al. (43)
conducted a global analysis of microRNA expression and
identified a group of microRNAs that can be regulated by
hypoxia (hypoxia-regulated microRNAs) in colon and breast
cancer cells. Of interest, Let-7 microRNAs can be regulated by
hypoxia, and Let-7 hypoxia-regulated microRNAs seem to be
tissue specific. For example, in squamous cell carcinoma,
hypoxia induces Let-7s overexpression (27); in comparison, in
nasopharyngeal carcinoma, down-regulation of Let-7s by
hypoxia is evident (44). The loss of Let-7 in large leiomyomas
requires further study.
Materials and MethodsPatient and Tissue Samples
Leiomyoma tissue samples were collected from hysterecto-
my specimens removed for symptomatic disease. Of the 30
cases selected, fresh frozen tissues from one large (z10 cm)
and one small (V3 cm) leiomyoma and matched myometrium
were collected. All tissue samples were collected within 1 to
4 h of surgery. Tissues were stored at �80jC before being used
to examine mRNA, microRNA, and protein by RT-PCR,
Northern blot, and Western blot analyses, respectively. Eight
HMGA2-positive leiomyomas were selected for additional
transfection and luciferase assays.
Two large tissue microarrays (TMA1 and TMA2), prepared
from paraffin-embedded tumors and matched myometrium,
were used to examine HMGA2 and Let-7c microRNA
expression. TMA1 contained 60 cases (45) and TMA2
contained 120 cases (46). Details about mean age and tumor
sizes are summarized in Table 3. The study was approved by
the NYU Medical Center Institutional Review Board.
Let-7 MicroRNA and let-7 InhibitorsMature double-stranded microRNAs of Let-7 and Let-7
inhibitors were purchased from Dharmacon, Inc. All experi-
ments were controlled using a nonfunctional double-stranded
random 22-nucleotide RNA (Block-it, Invitrogen).
HMGA2 cDNA ConstructsThe PCR products of full-length HMGA2a (forward primer,
5¶-ATGAGCGCACGCGGTGAGGGC-3¶; reverse primer, 5¶-GTTAGAAGACACTCAAAGGAACAG-3¶) and HMGA2a
3¶-UTR (forward, 5¶-GAGGAAACTGAAGAGACATCCTC-3¶; reverse, 5¶-GTTAGAAGACACTCAAAGGAACAG-3¶,
Table 3. Summary of Patients and Tissue Samples
Tissue Source No. Cases (No. Tumors) Mean Age (Range), y Tumor Sizes (Range), cm References
TMA1 60 (60) 49.2 (37-82) 5.77 (1.5-19.0) Wei et al. (45)TMA2 120 (120) 46.8 (35-59) 6.83 (1.0-22.0) Wei et al. (46)Fresh-frozen tissue 30 (60) 45.8 (35-52) V3/z10 This studyPrimary cell culture 5 (8) 42.5 (41-45) 1-10 This study
Peng et al.
Mol Cancer Res 2008;6(4). April 2008
670
containing 5 Let-7 LCS; Table 1) were cloned into the
pDNA3.1 construct (Invitrogen). The HMGA2a 3¶-UTRcDNAs were prepared with the XbaI linker and further
subcloned into the Luciferase Reporter Vector pGL3 (Prom-
ega). Retroviral pBabe-puro vectors were treated with NdeI and
BamHI, releasing the full-length HMGA2a cDNA insert from
pcDNA3.1 and subsequently subcloning it into the pBabe-puro
vector. The orientation and fidelity of the cDNA sequence were
verified by sequence analysis.
PC3 and LNCaP Cell Lines with Stable Overexpression ofHMGA2a
To produce viral vectors, pBabe retroviral constructs
containing HMGA2a , with and without the 3¶-UTR, were
transfected onto the Phoenix amphotropic packaging cell line
(American Type Culture Collection) per manufacturer’s proto-
col for Lipofectamine-mediated transfection. Subsequently,
LNCaP and PC3 cells were infected with a mixture of viral
supernatant and fresh medium at a ratio of 1:4 in the presence of
4 Ag/mL polybrene for 24 to 48 h. Single colonies with proven
expression of HMGA2 by Western blot were isolated and
further cultured for use in proliferation assays.
Let-7c MicroRNA In situ HybridizationThe hybridization system and probes, miRCURY LNA,
Let-7c , and U6 , were purchased from Exiqon. The detailed
procedure for in situ hybridization was done per manufacturer’s
protocol (47). In brief, 4-Am TMA2 slides were prepared.
Following deparaffinization and deproteinization, the slides
were prehybridized with 1� hybridization buffer without
probe. The hybridization was carried out overnight in a
1� hybridization buffer (30-70 AL) with predenatured miR-
CURY LNA, Let-7c , or U6 probes. After washing, the slides
were blocked and incubated with alkaline phosphatase–
conjugated anti-DIG Fab fragments (1:1500; Roche) and
visualized for color detection.
Quantitative RT-PCRFor the detection of mature microRNAs, mirVana quantita-
tive RT-PCR primers and the mirVana Quantitative RT-PCR
Detection Kits (Ambion) were used and optimized according
to the abundance of microRNAs in the samples. In brief, 50 to
100 ng of total RNA were reverse transcribed with specific
microRNA primers. A total of 15 to 30 cycles were done for
quantitation. Primers for the common domain of HMGA2 , the
dominant transcript (HMGA2a), and the cryptic HMGA2
transcripts were designed (Table 1). The abundances of cDNA
products were detected by quantitative RT-PCR and were
normalized by the internal control products of U6 and a-actin.
ImmunohistochemistryThe TMA blocks from formalin-fixed and paraffin-embedded
tissues were sectioned at 4 Am. After deparaffinization and anti-
gen retrieval, all immunohistochemical staining was done on a
Ventana Nexus automated system.
Western Blot AnalysisFresh frozen tissue or culture cell samples were homogenized
at 4jC in a protein lysis buffer (0.5 g tissue in 1-2 mL). Identical
amounts of total proteins from each sample were separated
through a 12% SDS-PAGE gel and then transferred onto a
polyvinylidene difluoride membrane (Perkin-Elmer Life Scien-
tific, Inc.). Development of the immunoblot with antisera
against HMGA2 and negative control HMGA2 blocking peptide
(from Dr. Alfredo, Universita degli Studi di Napoli, Napoli, Italy,
and Santa Cruz Biotechnology, Inc.) was tested and a single
specific HMGA2 band at 25 kDa was detected, as previously
described.
Primary Cell CultureSelected leiomyomas were chopped into small fragments
(1 mm) and placed in DMEM (Invitrogen) containing 10%
fetal bovine serum (Gemini) and 250 units/mL collagenase V
(Sigma-Aldrich) for 2 to 4 h in a 37jC incubator. Cells were
washed and maintained in 37jC incubators with 5% CO2 until
the cells reached 30% to 40% confluence. For long-term
storage, cells were trypsinized, resuspended in freezing
medium, and stored in liquid nitrogen.
MicroRNA TransfectionBefore transfection, cells were placed in standard medium
without antibiotics for 24 h. Per manufacturers’ protocol,
transfection was done using the Lipofectamine system with
microRNA concentrations of 20 to 60 pmol/well in either
6-well or 24-well plates. To estimate transfection efficiency,
cotransfection with the Block-iT Fluorescent double-stranded
random 22-mer RNA (Invitrogen) was done. The FITC
fluorescence was visualized by lex = 494 nm and lem = 519
nm to assess the percentage of cells that were successfully
transfected. Cells receiving only the tagged random sequence
double-strand 22-mer were used as nonspecific references at all
data points. Following transfection, cells were harvested and
analyzed at the indicated times.
Luciferase Transfection AssaysHeLa cells and primary leiomyoma cell cultures were split at
a cellular density of 1 � 104 per well into 24-well plates f24 h
before transfection. After washing with PBS, cells in each well
were transfected with 200 ng of either the luciferase reporter
pGL3 control (Promega) or the pGL3HMGA2 3¶-UTR construct,
as well as with 1 ng of the pRLuc internal control plasmid
(Biosignal). To block the endogenous effect of Let-7, cotrans-
fection of Let-7 inhibitors at various doses (0, 20, 30, 40, and
60 pmol; Dharmacon) was also done. Cells were maintained in
transfection conditions for 48 h and harvested for the dual
luciferase assay (Promega). Briefly, cells were washed and lysed
in 100 AL of 1� lysis buffer. The lysis mixture was transferred
into an Eppendorf tube containing 100 AL of solution A. The
luciferase expression was determined as recommended by
Promega or by a Western blot analysis of HMGA2.
Cellular Proliferation AssayPC3 and LNCaP cell lines of control (with pBabe) and of
tests (stable overexpression of HMGA2a with and without
Let-7 LCS) were passed in 24-well plates in triplicate at
densities of 5 � 103 per well for LNCaP and 1 � 104 per well
for PC3 cells. Cells were subsequently transfected with control
Repression of HMGA2 by Let-7 in Leiomyomas
Mol Cancer Res 2008;6(4). April 2008
671
RNA (nonfunction; Invitrogen), Let-7c , and/or Let-7 inhibitors
(Dharmacon) at a dose of 40 pmol/well. Cellular proliferation
was counted at 24, 48, 72, and 96 h using the colorimetric
WST-1 assay (Cell Proliferation Reagent, Roche). Briefly,
the cells were rinsed with PBS and then incubated with 10%
WST-1 reagent in a serum-free medium for 2 h. Aliquots were
then transferred to 96-well plates and the samples were read in
a spectrophotometric plate reader at 450 nm (FLUOstar
OPTIMA, BMG Lab Technologies).
Statistical AnalysisMean and SEs were calculated for the quantitative values.
Statistical significance was analyzed by a paired t test and
P < 0.05 was considered significant.
AcknowledgmentsWe thank Dr. Eva Hernando for the scientific discussions, and Drs. PatriciaSoteropoulos, Virginie Aris, Tongsheng Wang, Luis Chiriboga, Peng Lan, andHuihui Ye for providing technical assistance in our early microRNA profilinganalysis, TMA preparation, microRNA in situ hybridization, and immunostains.
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