Hasil Isolasi Total Genom Hasil Amplifikasi 16 SRNA - For Merge
-
Upload
asa-etudier-la-dien -
Category
Documents
-
view
216 -
download
1
description
Transcript of Hasil Isolasi Total Genom Hasil Amplifikasi 16 SRNA - For Merge
Hasil Isolasi total genom Hasil amplifikasi 16 sRNA
Perhitungan konsentrasi DNA dengan nanodrop (50,89 ng/ul)
Hasil Sequencing 16S rRNA- 63 Forward
NNNNNNNNGNCNNNNTNCNGCGGGCTGGCTCCTAAAAGGTTACCTCACCGACTTCGGGTGTTACAAACTCTCGT
GGTGTGACGGGCGGTGTGTACAAGGCCCGGGAACGTATTCACCGCGGCATGCTGATCCGCGATTACTAGCGATTC
CAGCTTCACGCAGTCGAGTTGCAGACTGCGATCCGAACTGAGAACAGATTTGTGGGATTGGCTTAACCTCGCGGT
TTCGCTGCCCTTTGTTCTGTCCATTGTAGCACGTGTGTAGCCCAGGTCATAAGGGGCATGATGATTTGACGTCATCC
CCACCTTCCTCCGGTTTGTCACCGGCAGTCACCTTAGAGTGCCCAACTGAATGCTGGCAACTAAGATCAAGGGTTG
CGCTCGTTGCGGGACTTAACCCAACATCTCACGACACGAGCTGACGACAACCATGCACCACCTGTCACTCTGCCCC
CGAAGGGGACGTCCTATCTCTAGGATTGTCAGAGGATGTCAAGACCTGGTAAGGTTCTTCGCGTTGCTTCGAATTA
AACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCCTTTGAGTTTCAGTCTTGCGACCGTACTCCCCAGGCG
GAGTGCTTAATGCGTTAGCTGCAGCACTAAGGGGCGGAAACCCCCTAACACTTAGCACTCATCGTTTACGGCGTG
GACTACCAGGGTATCTAATCCTGTTCGCTCCCCACGCTTTCGCTCCTCAGCGTCAGTTACAGACCAGAGAGTCGCCT
TCGCCACTGGTGTTCCTCCACATCTCTACGCATTTCACCGCTACACGTGGAATTCCACTCTCCTCNTCTGCACTCAAG
TTCCCCAGTTTCCAATGACCCTCCCCGGTTGAGCCGGGGGCTTTCACATCAGACTTAAGAAACCGCCTGCGAGCCC
TTTACGCCCATAATTCCGGACNACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTT
TCTGGTTAGNACCGTCAAGGNACCGCCCTATCGAACGGNACTGTCTNCCTACAACGANNTTACGATCCGGAAAAN
NNNTCACTTCNNCGCNTNNTNCGTCGACTTNGTCATGCGANATCNNNNNCTGCNTCCGANGANCNGGNCCNNN
NNNNNNCCANNGNGNCCGANCACCCTNNTCCAG
Hasil Sequencing 16S rRNA - 1387 Reverse
NNNNNNNNNNNGGNNNNNTATAATGCAGTCGAGCGGACAGATGGGAGCTTGCTCCCTGATGTTAGCGGCGGA
CGGGTGAGTAACACGTGNGTAACCTGCCTGTAAGACTGGGATAACTCCGGGAAACCGGGGCTAATACCGGATGG
TTGTTTGAACCGCATGGTTCAAACATAAAAGGTGGCTTCGGCTACCACTTACAGATGGACCCGCGGCGCATTAGCT
AGTTGGTGAGGTAACGGCTCACCAAGGCGACGATGCGTAGCCGACCTGAGAGGGTGATCGGCCACACTGGGACT
GAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGACGAAAGTCTGACGGAGCAA
CGCCGCGTGAGTGATGAAGGTTTTCGGATCGTAAAGCTCTGTTGTTAGGGAAGAACAAGTACCGTTCGAATAGGG
CGGTACCTTGACGGTACCTAACCAGAAAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCA
AGCGTTGTCCGGAATTATTGGGCGTAAAGGGCTCGCAGGCGGTTTCTTAAGTCTGATGTGAAAGCCCCCGGCTCA
ACCGGGGAGGGTCATTGGAAACTGGGGAACTTGAGTGCAGAAGAGGAGAGTGGAATTCCACGTGTAGCGGTGA
AATGCGTAGAGATGTGGAGGAACACCAGTGGCGAAGGCGACTCTCTGGTCTGTAACTGACGCTGAGGAGCGAAA
GCGTGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTGCTAAGTGTTAGGGGGTT
TCCGCCCCTTAGTGCTGCAGCTAACGCATTAAGCACTCCGCCTGGGGAGTACGGTCGCAAGACTGAAACTCAAGG
AATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAGGTCTT
GACATCCNCTGACAATCCTAGAGATAGGACGTCCCCTTTCGGGGCAGANNGACNGGNGTTGCANGNTGTCCGN
Data Konsensus
NNNNNNNNGNCNNNNTNCNGCGGGCTGGCTCCTAAAAGGTTACCTCACCGACTTCGGGTGTTACAAACTCTCGT
GGTGTGACGGGCGGTGTGTACAAGGCCCGGGAACGTATTCACCGCGGCATGCTGATCCGCGATTACTAGCGATTC
CAGCTTCACGCAGTCGAGTTGCAGACTGCGATCCGAACTGAGAACAGATTTGTGGGATTGGCTTAACCTCGCGGT
TTCGCTGCCCTTTGTTCTGTCCATTGTAGCACGTGTGTAGCCCAGGTCATAAGGGGCATGATGATTTGACGTCATCC
CCACCTTCCTCCGGTTTGTCACCGGCAGTCACCTTAGAGTGCCCAACTGAATGCTGGCAACTAAGATCAAGGGTTG
CGCTCGTTGCGGGACTTAACCCAACATCTCACGACACGAGCTGACGRMMACCATGCAMCACCTGTCACTCTGCCC
CSRAAGGGGACGTCCTATCTCTAGGATTGTCAGAGGATGTCAAGACCTGGTAAGGTTCTTCGCGTTGCTTCGAATT
AAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCCTTTGAGTTTCAGTCTTGCGACCGTACTCCCCAGGC
GGAGTGCTTAATGCGTTAGCTGCAGCACTAAGGGGCGGAAACCCCCTAACACTTAGCACTCATCGTTTACGGCGT
GGACTACCAGGGTATCTAATCCTGTTCGCTCCCCACGCTTTCGCTCCTCAGCGTCAGTTACAGACCAGAGAGTCGC
CTTCGCCACTGGTGTTCCTCCACATCTCTACGCATTTCACCGCTACACGTGGAATTCCACTCTCCTCTTCTGCACTCA
AGTTCCCCAGTTTCCAATGACCCTCCCCGGTTGAGCCGGGGGCTTTCACATCAGACTTAAGAAACCGCCTGCGAGC
CCTTTACGCCCAATAATTCCGGACAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGG
CTTTCTGGTTAGGTACCGTCAAGGTACCGCCCTATTCGAACGGTACTTGTTCTTCCCTAACAACAGAGCTTTACGAT
CCGRAAAMCTTCATCACTYMCGCGGCGTTGCTCCGTCAGACTTTCGTCCATTGCGGAAGATTCCCTACTGCTGCCT
CCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCCGATCACCCTCNTCMRGTCGGCTACGCATCGTCGCC
TTGGTGAGCCGTTACCTCACCAACTAGCTAATGCGCCGCGGGTCCATCTGTAAGTGGTAGCCGAAGCCACCTTTTA
TGTTTGAACCATGCGGTTCAAACAACCATCCGGTATTAGCCCCGGTTTCCCGGAGTTATCCCAGTCTTACAGGCAG
GTTACNCACGTGTTACTCACCCGTCCGCCGCTAACATCAGGGAGCAAGCTCCCATCTGTCCGCTCGACTGCATTATA
NNNNNCCNNNNNNNNNNN
Hasil kromatogram 63F
Hasil kromatogram 1387R
Hasil analisis BLAST-N
Data yang diperoleh menunjukan semua sampel memiliki tingkat kesesuaian/ homologi yang tinggi
yaitu 97% (Query Coverage) dan 99% (Max Ident) dengan bakteri Bacillus subtilis pada GeneBank
Hasil pewarnaan gram (1000x) Hasil pewarnaan spora (1000x)
Penghambatan bakteriosin hasil pengendapan ammonium sulfat terhadap Vibrio Harvey
Ket : 1:1 ( Vibrio harvey 100 ul : bakteriosin 100 ul)
1:2 ( Vibrio harvey 100 ul : bakteriosin 200 ul)
Pengendapan 70 %
Pengenceran Jumlah koloni sel/ml Persen penghambatan (%)
Kontrol
10^4 TBUD
10^5 TBUD
10^6 187
10^7 130 13 X 109
1:1
10^4 340
10^5 260
10^6 123
10^7 97 9,7 x 109 25,38 %
1:2
10^4 TBUD
10^5 143
10^6 97
10^7 66 6,6 x 109 49,23 %
Pengendapan 80 %
Pengenceran Jumlah koloni sel/ml Persen penghambatan (%)
Kontrol
10^4 TBUD
10^5 TBUD
10^6 187
10^7 130 13 X 109
1:1
10^4 TBUD
10^5 TBUD
10^6 176
10^7 102 10,2 x 109 21,54
1:2
10^4 176
10^5 198
10^6 97
10^7 78 7,8 x 109 40,00