A GENOTYPE-INDEPENDENT AGROBACTERIUM MEDIATED TRANSFORMATION OF GERMINATED EMBRYO OF COTTON...
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Transcript of A GENOTYPE-INDEPENDENT AGROBACTERIUM MEDIATED TRANSFORMATION OF GERMINATED EMBRYO OF COTTON...
International Journal of Bio-Technology
and Research (IJBTR)
ISSN 2249-6858
Vol. 3, Issue 1, Mar 2013, 81-90
© TJPRC Pvt. Ltd.
A GENOTYPE-INDEPENDENT AGROBACTERIUM MEDIATED TRANSFORMATION OF
GERMINATED EMBRYO OF COTTON (GOSSYPIUM HIRSUTUM L.)
MANOJ KUMAR1, ANOOP KUMAR SHUKLA
2, HARPAL SINGH
3, PRAVEEN C VERMA
4 & PRADHYUMNA
K SINGH5
Plant Molecular Biology & Genetic Engineering Division
CSIR-National Botanical Research Institute, Rana Pratap Marg, Lucknow, India
ABSTRACT
Explants transformation through Agrobacterium, followed by in vitro regeneration is only method used for
genetic improvement of cotton. The currently used method are based on somatic embryogenesis, therefore time consuming,
genotype-dependent and expensive. We report here a genotype-independent method for genetic transformation of cotton.
Embryonic axes of 48 hours of germinating cotton seeds were incised at the cotyledonary node and co-cultivated with A.
tumefaciens. Transfected embryos were transferred into test tubes and grown for 10 days at 28 + 2oC. Later, the seedlings
were transferred to pots in glass house. T1 seeds obtained from the putative T0 transgenics were screened for the promising
transformation events on the basis of formation of root laterals in Hoagland liquid medium containing hygromycin B. The
transgenic nature of the positive T1 seedlings was confirmed by PCR and PCR-Southern analysis. Histochemical assay
showed the presence of the GUS reporter protein in T0 and T1 transgenics. This method gives 2-3 % transformation
efficiency and provides convenient method for transformation of cotton. The strategy, in principle, should be applicable to
all the cultivars and genotypes of cotton which are susceptible to Agrobacterium tumefaciens infection.
KEYWORDS: Agrobacterium-Mediated Transformation, Embryo Transformation, δ-endostoxin, Transgenic Cotton
ABBREVIATION
CaMV35S: Cauliflower mosaic virus 35S promoter; hptII:Hygromycin Phosphotransferase II; GUS: β-
Glucuronidase
INTRODUCTION
Cotton (white gold) is a major fiber crop of India and accounting for about 16 per cent of India’s export earnings
(Anonymous, 2007). Therefore, there is a dire need to produce maximum and best quality cotton. There are many desired
traits that can be improved through genetic engineering for commercial advantage. Genes conferring tolerance to various
biotic and abiotic stresses, or improving the yield and fiber quality have already been isolated and characterized in our
laboratory. The introduction of these genes into the cotton genome cotton is by no means an easy task. Most elite cotton
varieties remain recalcitrant and not amenable to genetic manipulation to protocols so far developed. Genetic
transformation of cotton by A. tumefaciens requires tissue culture dependent regeneration process, which undergo
prolonged tissue culture, genotype-dependency and expensive regeneration method. Efficient in vitro techniques for
regeneration and somatic embryogenesis from cotton are limited when compared to other major commercial crops. Only a
limited numbers of cultivars can be induced to produce somatic embryos and regenerative plants and the most responsive
lines are coker varieties which are no longer under cultivation (Trolinder and Goodin 1987, 1988 a, b; Davidonis and
Hamilton 1983; Kumaria et al. 2003).
82 Manoj Kumar, Anoop Kumar Shukla, Harpal Singh, Praveen C Verma & Pradhyumna K Singh
In the past decade, extensive research efforts have been focused for genetic improvement and a number of genes
with potential to confer agronomic advantages have been introduced by A. tumefaciens (Perlak et al. 1990, Bayley et al.
1992 and Lyon et al. 1993, Leelavathi et al. 2004) and particle bombardment (Thomas et al. 1995, Finer and McMullen
1990). Improvement of tissue culture methods to induce efficient transformation in a genotype independent manner is
desirable (Trolinder and Goodin 1989). The transformation efficiency is quite different in different cotton genotypes (Zhao
et al 2006, Katageri et al 2007). Although different laboratories have their own favourite genotypes for cotton
biotechnology research, few genotypes such as Coker remained choice for genetic transformation studies (Hu et al., 2011).
Most of the desirable genes are introduced initially into Coker varieties and then back-crossed with the desired genotype.
Several years of backcrossing and selection are required to identify agronomically suitable lines for commercialization
(Satyavathi et al., 2002).
However, most of the plants SE regenerated transformed plants, show abnormalities (Trolinder and Goodin 1988).
The low embryogenic potential, maturation and conversion of putative transgenic embryos into plantlets also remain a
problem. Alternate strategies to obtain transgenic cotton by direct methods which are genotype independent and do not
intervene lengthy tissue culture methods are desirable. Transgenic plants have also been generated by regeneration from
shoot apical tissue (Gould and Magallanes-Cedeno 1998, Gould et al 1991).
Another method for raising cotton transgenic is by pollen tube pathway transformation (Zhou et al 1983, Huang et
al 1999). Earlier report of transformation of embryonal segment of pigeon pea is reported by our group (Surekha et al.
2005). Several other groups also reported embryo transformation of several crops including safflower (Rohini and Rao
2000), sunflower (Schoneberg et al. 1994; Sankara Rao and Rohini 1996), peanut (Sankara Rao 2000) and maize (Wang et
al., 2007).
The generation of transgenic cotton plants is a routine practice in our laboratory for the validation of various
biotic (insect), abiotic stress (drought) and fiber related genes. Genotype limitation, abnormal somatic embryos, callus
induced genetic damage are commonly observed among regenerated plants (unpublished data). We are able to regenerate
limited number of plants from callus cultures by somatic embryogenesis due to phenotypic abnormalities (Aydin et al.,
2010), and cytogenetic changes (Stelly et al 1989).
Even in high embryogenic potential Coker cultivars, maturation and conversion of putative transgenic embryos
into plantlets still possess a problem. Further, insect resistant genes used for transformation have some detrimental effect
on somatic embryo development (Rawat et al., 2011). All these observations led us to develop an efficient transformation
method in a genotype independent manner.
In planta transformation experiments having high transformation efficiency is the prerequisite for large scale
functional analysis of the genes in cotton. Therefore, an efficient method for direct Agrobacterium-mediated
transformation of different cotton varieties using germinated embryos is developed and transformed with gus reporter gene
under CaMV35s promoter.
MATERIALS AND METHODS
Seed Sterilization and Germination
Sterilization of seeds of Khandwa-2, Anjali and Coker 310 was carried out as described earlier (Kumar and Tuli
2004). Seeds were grown aseptically in 250 ml flask containing 50 ml autoclaved distilled water. After 24 hours of
germination, seeds were de-coated to expose the embryos. Embryos were incised with scalpel in such a way that shoot
apical meristem became exposed (Fig. 1).
A Genotype-Independent Agrobacterium Mediated Transformation of 83 Germinated Embryo of Cotton (Gossypium hirsutum L.)
Construction of Binary Vector
Plasmid construction was carried out in plant transformation vector as described by Sambrook et al. 1989.
Construct in binary vector containing CaMV35S promoter for expression in plant of GUS protein was utilized for
Agrobacterium-mediated transformation (Fig 2).
Agrobacterium tumefaciens Infection and Co-Cultivation
Agrobacterium tumefaciens (LBA4404) harbouring binary vector was streaked on YEB medium plate, a single
isolated colony was inoculated in 5 ml YEP medium containing rifampcin 50 mgL-1
, streptomycin 200 mgL-1
and
kanamycin 50 mgL-1
and grown at 28oC and 200 rpm as primary culture. 50 µl of primary culture was inoculated in 50 ml
of YEP medium and grown in similar condition as secondary culture till OD600 reached to 1.4.
Cells were harvested by centrifugation (6,000Xg, 4oC, 5 min). Pellet was resuspended in 100 ml Induction
Medium (IM) (containing 1gL-1
NH4Cl2, 0.3 gL-1
MgSO4.7H2O, 0.15 gL-1
KCl, 0.01 gL-1
CaCl2, 0.0025 gL-1
FeSO4.7H2O,
0.272 gL-1
KH2PO4, 0.390 gL-1
MES, 100 µM acetosyringone and 5.0 gL-1
glucose) at pH 6.0 and incubated for 4 hours
at 175 rpm and 26 o
C in incubator shaker. Cells were again harvested, resuspended in 100 ml MSO medium (MS salts, B5
vitamins, MES 1.95 mgL-1
, 100 µM acetosyringone and glucose 20 gL
-1 at pH 5.65) and incubated for 2 hours at 150 rpm
and 250C.
To inoculate A. tumefaciens on to the embryonic apical meristem in the incised embryos, they were dipped in to
bacterial suspension (MSO medium) and cultivated for 1 h at 125 rpm, 250C in incubator shaker in dark. Then embryos
were collected, blot dried on sterile Whatman filter paper (Cat. Log no. 3030917) and transferred to co-cultivation medium
(MS salts, B5 vitamins, myoinositol 100 mgL-1, glucose 30 gL-1 and agar 0.8%) for 3 days at 280C in diffused light. Co-
cultivated embryos were washed with cefotaxime (250 mgL-1
) for 5 min followed by autoclaved distilled water. These
embryos were then transferred aseptically to test-tubes containing Hoagland medium on paper bridges.
After 10 days seedlings were transferred to pots containing potting mix (sandy loam soil, sand, vermiculite and
peat moss in 2:1:1:1 ratio). The plants were covered with polythene bags to maintain high humidity and irrigated with
sterile water for 14-18 days of hardening. During this period, the plants were incubated at 28±2 oC, 60 µmol m-2s-1 light
intensity and 16 hour of photoperiod in glass house. The polythene bags were removed and plants were then transferred to
net-house after 4-6 weeks.
ANALYSIS OF TRANSGENIC PLANTS
PCR Analysis
To establish transformed nature of the putative transgenic plants hpt II gene was used as targets for PCR analyses.
Genomic DNA was isolated from one month old plant leaves by CTAB method (Murray and Thompson, 1980) and used
for PCR amplification of hpt II gene.
The primers used were forward primer HPF 5’-TCCACTATCGGCGAGTACTTCTA-3’ and reverse primer
HPR-5’ACGCGGATTTGCGCTCCAACAAT-3’ with 500- bp amplicon size.
The vir C gene was used as control to detect the presence of contaminating Agrobacterium in the plant tissue. The
730-bp fragment of Agrobacterium-borne vir C gene was detected by using 5’-ATCATTTGTAGCGACT-3’ (forward) and
5’-AGCTCAAACCTGCTTC-3’ (reverse) primers. The amplicons were visualized after electrophoresis in 0.8% agarose
gels.
84 Manoj Kumar, Anoop Kumar Shukla, Harpal Singh, Praveen C Verma & Pradhyumna K Singh
Southern Analysis of PCR Product
The identity of hptII gene fragment in the PCR product was confirmed by Southern hybridization technique. The
PCR product for hptII gene from putative transgenic plants after gel separation were blotted onto nylon membranes
(Hybond N+; Amersham-Pharmacia The Probe was synthesized from 5’ site hpt II gene and was radioactively labeled with
α-[32 P]dCTP using the Random primer Kit from BRIT (India) according to the manufacturer’s instructions, and used for
the hybridization. The blotting and subsequent hybridization were carried out as described (Samboork et al., 1989).
RNA Isolation and RT PCR
RNA was isolated by total RNA isolation kit (Sigma, USA). cDNA was synthesized from 2 µg of RNA using first
strand cDNA synthesis kit (invitrogen, USA). cDNA was used for PCR amplification using gene specific primers of hpt II
(HPF and HPR).
Hygromycin Selection of Transgenic Plants
Putative transgenic cotton seeds (T1 and T2) were screened by growing them on hygromycin B (35 mgL-1 (Sigma,
USA) for the presence of transgene. Seeds obtained from T0 and subsequent generation of transgenic cotton plants were
evaluated on the basis of presence of root-laterals in selection medium (Hoagland with hygromycin B). After 7 days, plants
with root-laterals were considered positive while without root-laterals were considered as negative.
RESULTS
Agrobacterium mediated transformation of germinated shoot apical meristem is rapid and an efficient method of
transformation as after co-cultivation embryos were directly transferred to Hoagland medium for further growth. Genetic
transformation of total of 304 cotton seeds of three different cultivars yielded 91 transformed T0 plants. Almost similar
transformation frequency (27%-31 %) was observed on A. tumefaciens-mediated transformation of incised apical meristem
of germinated embryos of three different cultivars. DNA was isolated from all plants and PCR amplification results
showed presence of insert in nearly 29% of plantlets. The results are shown in Table1 and PCR amplification of some
plants is shown in Fig 3a. virC specific primers did not show any amplification from the genomic DNA of transgenic
plants, indicated the absence of residual bacteria (Fig 3b). RT-PCR confirmed the presence of Hpt II gene in transgenic T1
generation (Fig 4). It was observed that all plants were chimeric as GUS staining of T0 plant leaves showed mosaic pattern
(Fig 5A).
A total of 91 PCR positive T0 putative transgenic plants were transplanted in to net house after 4-6 weeks of
screening and hardening. Most of the plants grow normally without showing any phenotypic variation. Transformed T0
plants were allowed to pollinate naturally. Seeds obtained from T0 plants were grown on selection medium (Hoagland
medium containing 35 mgL-1 Hygromycin B). T1 Seedlings showing presence of root-lateral on 7th day were considered
positive and were transferred to pots in glass house.
A total of 5045 seeds were harvested at maturity and treated for Hygromicin selection and lateral root formation.
Individually, 85 hygromycin resistant plants out of 2827 in case of Khandwa -II, 22 out of 965 in case of Coker-310 and
Anjali var. yields 42 out of 1253 seeds on the basis of root lateral formation on hygromycin selection (Table 1). PCR
amplification and GUS assay of T1 transgenics confirmed the presence of the gus gene and GUS protein. Further, T1 plants
were not chimeric in nature as GUS staining was uniform from different leaves of the same plant (Fig 5B).
A Genotype-Independent Agrobacterium Mediated Transformation of 85 Germinated Embryo of Cotton (Gossypium hirsutum L.)
The confirmed positive T1 plants were assayed again using PCR-Southern blot hybridization. Genomic DNA
isolated from T1 generation transgenic cotton plants confirmed integration of the uid A gene in the transgenic cotton lines.
Genomic DNA isolated from non-transgenic plants did not hybridize with the Hpt II probe (Fig 6). Plants (T1) were
selected and seeds from these plants were analyzed for segregation ratio analysis. The Mendelian inheritance could not be
deduced due to small number of seeds obtained. Homozygous T2 plants were obtained by growing seeds from a single boll
on selection medium. Boll giving all seeds positive indicates that its mother plant (T1) was homozygous. The method
presented here showed not only the integration of both marker gene as well as antibiotic resistant gene, but also confirmed
the transmission of the introduced genes.
DISCUSSIONS
Development of a transformation method, which is independent of cultivars or tissue culture barriers, would
represent a major achievement in the area of transgenic development. Shoot apex transformation is carried out in different
cultivars of cotton, in which bisected shoot apex have been used for transformation cotton (Satyavathi et al. 2002; Gould et
al. 1998). A practical approach of embryo transformation is a short-term process of transformation of any genotype of
cotton. The advantage of using the embryo as an explant is that it allows genotype independent transformation and the
relatively rapid recovery of transgenic progeny (Christou, 1996; John 1997). This method of transformation avoids
somaclonal variations induced by long-term exposure of tissue/cells to culture media before they mature to give
regenerants with varying degree of somaclonal variation.
The feasibility of this transformation strategy was initially evaluated on the basis of number of seedlings
germinated after wounding and infection with A.tumefaciens. In embryo transformation, we utilized incised embryonal axis
for transformation. After co-cultivation embryos were directly transferred to Hoagland medium, almost all the embryos
transferred to test tubes, survived and were healthy. After 7-10 days, seedlings were transferred to pots in glass house for
further development.
Transformation efficiency measured as percentage of confirmed transgenic plants out of total number of plants
raised. The T0 generation transformation percentage is based on PCR analysis using hpt II gene primers, which was about
29% and is in accordance with earlier reports of embryo transformation in Safflower (Rohini and Rao, 2000) and higher
than in case of Cajanus cajan, which was found to be 15% in T1 generation, where embryonal segment was used for the
transformation (Surekha et al., 2005). The percentage of confirmed transgenic plants appeared to be lower (approximately
4-10% less) when compared to the previous reports of wheat (Supartana et al., 2006), kennaf (Kojima et al., 2004) and
maiz (Chumakov et al., 2006; Wang et al., 2007), where in planta transformation was carried on either on pistil filaments,
or meristem.
The difference in the transformation efficiency of three different cultivars may be attributed to the appropriate
incision of the embryos to expose apical meristem. An extra slicing of meristem was resulted into death of seedling and
similarly less incision lowered the chance of expose to Agrobacterium.
In this transformation method, as the Agrobacterium tumefaciens transfers the gene in to the meristmatic cells that
are still to be differentiated. Therefore, the T0 plants are chimeric in nature i.e. the parts of the T0 plants, originating from
inoculated meristems, could be transformed, while the other remained untransformed. Due to this, no step involved for
Agrobacterium killing in the T0 stage plants and has been inferred that A. tumefaciens could be eliminated by the self
defense action of plants. Indeed, we have verified the absence of A. tumefaciens in the transformants by two ways. Firstly
86 Manoj Kumar, Anoop Kumar Shukla, Harpal Singh, Praveen C Verma & Pradhyumna K Singh
by inoculation of leaf homogenate on LB plates (data not presented), no colonies appeared on inoculated plates and
secondly by confirming the absence of Vir C gene in genomic DNA.
In cases of T1 generation plants, however, the entire plant tissue should be of transformed nature and for
confirmation and screening of positive plants, we give 7-days antibiotic selection to T1 seeds to check the presence of root-
laterals. Assumption that T-DNA integration at heterochromatin regions will not be eliminated in T0 generation, as we are
not giving selection of hygromycin to eliminate them which we do in tissue culture by selecting them in medium
containing antibiotic for four to five cycle, doesn’t hold good.
Another assumption that T-DNA may preferentially target euchromatic regions of the genome and avoid
heterochromatin came from transgene expression studies by Koncz et al. 1989. He positioned a promoterless nptII gene
into T-DNA near a T-DNA border, transformed tobacco and Arabidopsis plants (selecting for kanamycin resistance
encoded by nptII gene within the T-DNA), and recorded the frequency of NPTII-positive plants. NPTII activity could
result only from T-DNA integration into transcriptionally active regions of the genome, allowing the promoterless nptII
gene to be transcribed by an active promoter. The results of these experiments indicated that in both Arabidopsis and
tobacco, approximately 30% of the T-DNA insertions resulted in transgenic plants expressing NPTII activity. Because the
genome size of Nicotiana is more than 10 times that of Arabidopsis, in part resulting from increased levels of repetitive
and heterochromatic DNA, thus author suggests that T-DNA specifically targeted transcriptionally active regions of the
genome. In our study also, integrations of the gene in transcriptional active region may resulted in high level of expression.
Embryo transformation of cotton was easy and inexpensive as it did not require lengthy tissue culture procedure
i.e. regeneration of transformant via somatic embryogenesis. Another advantage of having genotype independency of this
method, as it can be used to transform those cotton varieties that are recalcitrant to regeneration. It is highly efficient
technique for cotton as number of genes can be stably introduced in the genome in a short span of time.
The possibility of some of the progeny resulting in fully transformed plants for the introduced gene has been
demonstrated in this study. The procedure was applied to different species of cotton also for the validation of different
genes. Transformants were obtained with other crops also (Tomato, Tagetes and Pyrethrum) with different transformation
efficiencies (Lab data). The Agrobacterium susceptibility of different crops may be one of the reasons for this difference
In conclusion, the embryo transformation method of cotton transformation described in present study provides
highly efficient and frequent method of transgenic cotton production via Agrobacterium transformation. Using this method
approximately 27%-30% of gus positive plants were obtained which gives up to 3.3% of transformation efficiency in T1
generation.
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APPENDICES
Table 1: Showing Transformation Efficiency of Agrobacterium-Mediated Transformation in T0 and T1 Generations
Genotypes
Number of Embryos for
Transformation
Number of PCR
Positive Embryos
Transformed (T0)
Number of Positive T1
Plants. Root Lateral
Presence
% Efficiency
Khandwa-2 104 33 85/2827 3
Coker-310 98 27 22/965 2.2
Anjali 102 31 42/1253 3.3
Figure Captions
Figure 1: Figure Showing Different Steps in Embryo Transformation Protocol for Cotton. (a) 24 H Germinated
Seeds, (b and c) Dissection of Embryo, (d and e) Co- Cultivation of Embryo, (f and g) Growing Seedlings in Test-
Tubes, (h) Transgenic Plant in Pot
A Genotype-Independent Agrobacterium Mediated Transformation of 89 Germinated Embryo of Cotton (Gossypium hirsutum L.)
Figure 2: Schematic Diagram of the T-DNA of PCAMBIA Binary Vector. LB, Left Border; CaMV35s, Cauliflower
Mosaic Virus 35S Promoter, RB, Right Border; HPTII, Hygromycin Phosphotransferase; uidA, GUS Reporter
Gene and Tnos, NOS Terminator
Figure 3: (a) PCR Amplification of hpt II Gene in T1 Positive (on the Basis of Presence of Root-Lateral) was
Showing Amplification of 500 bp. (b) Positive Plants Showing no Amplification of vir C Gene
Figure 4: Reverse Transcription PCR of T1 Transgenic for Presence of hpt II Transcript in Total RNA. Lane M
Shows Marker, Lane 1, 2, 3, 4 Shows 500 bp Band from Transgenic T1 cDNA, Lane 5 RT- and Lane 6 Amplification
from Positive Plasmid
Figure 5: Histochemical GUS Staining. Panel A: Sharing Chimeric GUS Staining in T0 Transgenic Cotton. Panel B:
Uniform GUS Staining in T1 Transgenic Cotton